Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/sdalzilio/mcc2026-input.r002-oct2-177944366100262.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/sdalzilio/mcc2026-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5973
Executing tool itstools
Input is Angiogenesis-PT-25, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r002-oct2-177944366100262
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 572K
-rw-r--r-- 1 mcc users 8.2K Mar 4 18:32 CTLCardinality.txt
-rw-r--r-- 1 mcc users 78K Mar 4 18:32 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.4K Mar 4 18:32 CTLFireability.txt
-rw-r--r-- 1 mcc users 37K Mar 4 18:32 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Mar 3 18:30 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Mar 3 18:30 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.1K Mar 15 07:05 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Mar 15 07:05 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Mar 15 07:06 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Mar 15 07:06 LTLFireability.xml
-rw-r--r-- 1 mcc users 22K Mar 4 18:32 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 212K Mar 4 18:32 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 6.8K Mar 4 18:32 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 55K Mar 4 18:32 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Mar 15 07:06 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 15 07:06 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 3 18:30 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 3 18:30 instance
-rw-r--r-- 1 mcc users 6 Mar 3 18:30 iscolored
-rw-r--r-- 1 mcc users 33K Mar 3 18:30 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

echo here is the order used to build the result vector(from xml file)
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-00
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-01
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-02
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-03
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-04
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-05
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-06
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-07
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-08
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-09
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-10
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-11
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-12
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-13
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-14
FORMULA_NAME Angiogenesis-PT-25-ReachabilityCardinality-2024-15

=== Now, execution of the tool begins

BK_START 1779468506348

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-25
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202604301425
[2026-05-22 16:48:27] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2026-05-22 16:48:27] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2026-05-22 16:48:27] [INFO ] Load time of PNML (sax parser for PT used): 42 ms
[2026-05-22 16:48:28] [INFO ] Transformed 39 places.
[2026-05-22 16:48:28] [INFO ] Transformed 64 transitions.
[2026-05-22 16:48:28] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 139 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 22 ms.
Working with output stream class java.io.PrintStream
RANDOM walk for 40048 steps (8 resets) in 337 ms. (118 steps per ms) remains 6/16 properties
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-11 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-07 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-06 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-05 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-04 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-02 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-00 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
[2026-05-22 16:48:28] [INFO ] Flatten gal took : 35 ms
[2026-05-22 16:48:28] [INFO ] Flatten gal took : 8 ms
BEST_FIRST walk for 40003 steps (8 resets) in 737 ms. (54 steps per ms) remains 6/6 properties
[2026-05-22 16:48:28] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3628986722362394963.gal : 21 ms
[2026-05-22 16:48:28] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality10219466317316658082.prop : 5 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202604301425/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality3628986722362394963.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality10219466317316658082.prop' '--nowitness' '--gen-order' 'FOLLOW'

BEST_FIRST walk for 40004 steps (8 resets) in 518 ms. (77 steps per ms) remains 6/6 properties
its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202604301425/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality10219466317316658082.prop.
SDD proceeding with computation,6 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,6 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,6 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,6 properties remain. new max is 32
SDD size :19 after 52
SDD proceeding with computation,6 properties remain. new max is 64
SDD size :52 after 1103
BEST_FIRST walk for 40004 steps (8 resets) in 213 ms. (186 steps per ms) remains 6/6 properties
BEST_FIRST walk for 40002 steps (8 resets) in 164 ms. (242 steps per ms) remains 6/6 properties
BEST_FIRST walk for 40004 steps (8 resets) in 98 ms. (404 steps per ms) remains 5/6 properties
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-08 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
SDD proceeding with computation,6 properties remain. new max is 128
SDD size :1103 after 3128
BEST_FIRST walk for 40004 steps (8 resets) in 184 ms. (216 steps per ms) remains 5/5 properties
Running PetriSpot : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.petrispot.binaries_1.0.0.202604301425/bin/petri64' '--loadKERS=/tmp/petrispot-input-1684919724050711332.kers' '--Pflows' '--basisKERS=/tmp/petrispot-output-9084681964969467702.kers'
[2026-05-22 16:48:28] [INFO ] Running PetriSpot with arguments : [--loadKERS=/tmp/petrispot-input-1684919724050711332.kers, --Pflows, --basisKERS=/tmp/petrispot-output-9084681964969467702.kers]
Culling duplicate invariants (modulo rational): removing 1 columns.
Culled 1 columns in 0 ms.
// Phase 1: matrix 64 rows 38 cols 182 entries
Finished phase 1 with 31 SingleSign rule and 0 generalized
[2026-05-22 16:48:28] [INFO ] Computed 8 invariants in 0 ms
Computed 8 P flows in 1 ms.
Exported basis to /tmp/petrispot-output-9084681964969467702.kers
Total runtime 1 ms.
Excessive predecessor constraint size, skipping predecessor.
Problem Angiogenesis-PT-25-ReachabilityCardinality-2024-01 is UNSAT
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-01 FALSE TECHNIQUES SMT_REFINEMENT
Problem Angiogenesis-PT-25-ReachabilityCardinality-2024-13 is UNSAT
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-13 FALSE TECHNIQUES SMT_REFINEMENT
All remaining problems are real, not stopping.
At refinement iteration 0 (INCLUDED_ONLY) 0/38 variables, 5/5 constraints. Problems are: Problem set: 2 solved, 3 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/38 variables, 0/5 constraints. Problems are: Problem set: 2 solved, 3 unsolved
Problem Angiogenesis-PT-25-ReachabilityCardinality-2024-09 is UNSAT
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-09 TRUE TECHNIQUES SMT_REFINEMENT
Problem Angiogenesis-PT-25-ReachabilityCardinality-2024-10 is UNSAT
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-10 TRUE TECHNIQUES SMT_REFINEMENT
At refinement iteration 2 (OVERLAPS) 1/39 variables, 3/8 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/39 variables, 0/8 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 4 (OVERLAPS) 64/103 variables, 39/47 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/103 variables, 0/47 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 6 (OVERLAPS) 0/103 variables, 0/47 constraints. Problems are: Problem set: 4 solved, 1 unsolved
No progress, stopping.
After SMT solving in domain Real declared 103/103 variables, and 47 constraints, problems are : Problem set: 4 solved, 1 unsolved in 201 ms.
Refiners :[Positive P Invariants (semi-flows): 8/8 constraints, State Equation: 39/39 constraints, PredecessorRefiner: 4/4 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 4 solved, 1 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/26 variables, 1/1 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/26 variables, 0/1 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 2 (OVERLAPS) 12/38 variables, 6/7 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/38 variables, 0/7 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 4 (OVERLAPS) 1/39 variables, 1/8 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/39 variables, 0/8 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 6 (OVERLAPS) 64/103 variables, 39/47 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 7 (INCLUDED_ONLY) 0/103 variables, 1/48 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 8 (INCLUDED_ONLY) 0/103 variables, 0/48 constraints. Problems are: Problem set: 4 solved, 1 unsolved
At refinement iteration 9 (OVERLAPS) 0/103 variables, 0/48 constraints. Problems are: Problem set: 4 solved, 1 unsolved
No progress, stopping.
After SMT solving in domain Int declared 103/103 variables, and 48 constraints, problems are : Problem set: 4 solved, 1 unsolved in 147 ms.
Refiners :[Positive P Invariants (semi-flows): 8/8 constraints, State Equation: 39/39 constraints, PredecessorRefiner: 1/4 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 432ms problems are : Problem set: 4 solved, 1 unsolved
Finished Parikh walk after 190 steps, including 0 resets, run visited all 1 properties in 2 ms. (steps per millisecond=95 )
FORMULA Angiogenesis-PT-25-ReachabilityCardinality-2024-14 FALSE TECHNIQUES PARIKH_WALK
Parikh walk visited 1 properties in 6 ms.
ITS runner timed out or was interrupted.
ITS tools runner thread asked to quit. Dying gracefully.
All properties solved without resorting to model-checking.
Total runtime 1503 ms.

BK_STOP 1779468509401

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202604301425.jar
+ VERSION=202604301425
+ echo 'Running Version 202604301425'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5973"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-25, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r002-oct2-177944366100262"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;