Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/data/fkordon/mcc2025-input.r119-tall-174876430100201.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2025-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5832
Executing tool itstools
Input is HypertorusGrid-PT-d5k3p2b10, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r119-tall-174876430100201
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 14M
-rw-r--r-- 1 mcc users 9.1K May 29 14:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 75K May 29 14:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.5K May 29 14:47 CTLFireability.txt
-rw-r--r-- 1 mcc users 60K May 29 14:47 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 29 14:32 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.5K May 29 14:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 29 14:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.7K May 29 14:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 21K May 29 14:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 14K May 29 14:47 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 104K May 29 14:47 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 19K May 29 14:47 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 116K May 29 14:47 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K May 29 14:47 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.4K May 29 14:47 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 29 14:32 equiv_col
-rw-r--r-- 1 mcc users 10 May 29 14:32 instance
-rw-r--r-- 1 mcc users 6 May 29 14:32 iscolored
-rwxr-xr-x 1 mcc users 14M May 29 14:32 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1748765819801

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=HypertorusGrid-PT-d5k3p2b10
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
ReachabilityDeadlock PT
Running Version 202505121319
[2025-06-01 08:17:00] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2025-06-01 08:17:00] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2025-06-01 08:17:01] [INFO ] Load time of PNML (sax parser for PT used): 560 ms
[2025-06-01 08:17:01] [INFO ] Transformed 7533 places.
[2025-06-01 08:17:01] [INFO ] Transformed 24300 transitions.
[2025-06-01 08:17:01] [INFO ] Parsed PT model containing 7533 places and 24300 transitions and 97200 arcs in 778 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 3 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 27 ms.62659KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 7533/7533 places, 24300/24300 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 1543 ms. Remains 7533 /7533 variables (removed 0) and now considering 24300/24300 (removed 0) transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 1560 ms. Remains : 7533/7533 places, 24300/24300 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 7533/7533 places, 24300/24300 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 1507 ms. Remains 7533 /7533 variables (removed 0) and now considering 24300/24300 (removed 0) transitions.
// Phase 1: matrix 24300 rows 7533 cols
[2025-06-01 08:17:05] [INFO ] Computed 2674 invariants in 917 ms
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-06-01 08:17:16] [INFO ] Implicit Places using invariants in 11138 ms returned []
Implicit Place search using SMT only with invariants took 11233 ms to find 0 implicit places.
Running 21870 sub problems to find dead transitions.
[2025-06-01 08:17:16] [INFO ] Invariant cache hit.
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 2673/31833 variables, and 0 constraints, problems are : Problem set: 0 solved, 21870 unsolved in 30294 ms.
Refiners :[Positive P Invariants (semi-flows): 0/2673 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/7533 constraints, PredecessorRefiner: 21870/21870 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 21870 unsolved
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 2673/31833 variables, and 0 constraints, problems are : Problem set: 0 solved, 21870 unsolved in 30222 ms.
Refiners :[Positive P Invariants (semi-flows): 0/2673 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/7533 constraints, PredecessorRefiner: 0/21870 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 118464ms problems are : Problem set: 0 solved, 21870 unsolved
Search for dead transitions found 0 dead transitions in 118566ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 131384 ms. Remains : 7533/7533 places, 24300/24300 transitions.
Interrupted Random walk after 42624 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:19:44] [INFO ] Invariant cache hit.
Starting Z3 with timeout 300.0 s and query timeout 30000.0 ms
[2025-06-01 08:21:03] [INFO ] [Real]Absence check using 2673 positive place invariants in 75012 ms returned unknown
Interrupted Random directed walk after 63613 steps, including 0 resets, run timeout after 30305 ms. (steps per millisecond=2 )
Interrupted Random walk after 42138 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 63587 steps, including 0 resets, run timeout after 30125 ms. (steps per millisecond=2 )
Interrupted Random walk after 42518 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Starting structural reductions in DEADLOCK mode, iteration 0 : 7533/7533 places, 24300/24300 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 1380 ms. Remains 7533 /7533 variables (removed 0) and now considering 24300/24300 (removed 0) transitions.
[2025-06-01 08:23:04] [INFO ] Invariant cache hit.
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-06-01 08:23:14] [INFO ] Implicit Places using invariants in 9880 ms returned []
Implicit Place search using SMT only with invariants took 9885 ms to find 0 implicit places.
Running 21870 sub problems to find dead transitions.
[2025-06-01 08:23:14] [INFO ] Invariant cache hit.
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 2673/31833 variables, and 0 constraints, problems are : Problem set: 0 solved, 21870 unsolved in 30237 ms.
Refiners :[Positive P Invariants (semi-flows): 0/2673 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/7533 constraints, PredecessorRefiner: 21870/21870 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 21870 unsolved
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
Error getting values : (error "ParserException while parsing response: ((s2430 1)
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(s5154 timeout
1 org.smtlib.IParser$ParserException: Unbalanced parentheses at end of input")
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 2673/31833 variables, and 0 constraints, problems are : Problem set: 0 solved, 21870 unsolved in 30233 ms.
Refiners :[Positive P Invariants (semi-flows): 0/2673 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/7533 constraints, PredecessorRefiner: 0/21870 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 117588ms problems are : Problem set: 0 solved, 21870 unsolved
Search for dead transitions found 0 dead transitions in 117633ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 128943 ms. Remains : 7533/7533 places, 24300/24300 transitions.
Interrupted Random walk after 42805 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:25:42] [INFO ] Invariant cache hit.
Starting Z3 with timeout 300.0 s and query timeout 30000.0 ms
[2025-06-01 08:26:59] [INFO ] [Real]Absence check using 2673 positive place invariants in 74450 ms returned unknown
Interrupted Random directed walk after 63612 steps, including 0 resets, run timeout after 30069 ms. (steps per millisecond=2 )
Interrupted Random walk after 42376 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 64366 steps, including 0 resets, run timeout after 30634 ms. (steps per millisecond=2 )
Interrupted Random walk after 42493 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:29:02] [INFO ] Flatten gal took : 1072 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin8068193232860418015
[2025-06-01 08:29:02] [INFO ] Too many transitions (24300) to apply POR reductions. Disabling POR matrices.
[2025-06-01 08:29:03] [INFO ] Built C files in 367ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin8068193232860418015
Running compilation step : cd /tmp/ltsmin8068193232860418015;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202505121319/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202505121319/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
[2025-06-01 08:29:03] [INFO ] Applying decomposition
[2025-06-01 08:29:03] [INFO ] Flatten gal took : 777 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/convert-linux64' '-i' '/tmp/graph2454335286216608508.txt' '-o' '/tmp/graph2454335286216608508.bin' '-w' '/tmp/graph2454335286216608508.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/louvain-linux64' '/tmp/graph2454335286216608508.bin' '-l' '-1' '-v' '-w' '/tmp/graph2454335286216608508.weights' '-q' '0' '-e' '0.001'
[2025-06-01 08:29:05] [INFO ] Decomposing Gal with order
[2025-06-01 08:29:06] [INFO ] Rewriting arrays to variables to allow decomposition.
[2025-06-01 08:29:17] [INFO ] Removed a total of 38880 redundant transitions.
[2025-06-01 08:29:17] [INFO ] Flatten gal took : 1320 ms
[2025-06-01 08:29:18] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 130 ms.
[2025-06-01 08:29:18] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock8658038995851217380.gal : 238 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock8658038995851217380.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK'

its-ctl command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -...234
No direction supplied, using forward translation only.
Compilation finished in 349689 ms.
Running link step : cd /tmp/ltsmin8068193232860418015;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 263 ms.
Running LTSmin : cd /tmp/ltsmin8068193232860418015;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202505121319/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-d'
ITS-tools command line returned an error code 137
[2025-06-01 08:41:21] [INFO ] Flatten gal took : 24623 ms
[2025-06-01 08:41:22] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock392847291806722547.gal : 632 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock392847291806722547.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK' '--gen-order' 'FOLLOW'

its-ctl command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -...254
No direction supplied, using forward translation only.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202505121319.jar
+ VERSION=202505121319
+ echo 'Running Version 202505121319'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HypertorusGrid-PT-d5k3p2b10"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5832"
echo " Executing tool itstools"
echo " Input is HypertorusGrid-PT-d5k3p2b10, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r119-tall-174876430100201"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/HypertorusGrid-PT-d5k3p2b10.tgz
mv HypertorusGrid-PT-d5k3p2b10 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;