Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/data/fkordon/mcc2025-input.r119-tall-174876430000171.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2025-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5832
Executing tool itstools
Input is HypercubeGrid-PT-C5K3P3B15, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r119-tall-174876430000171
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 15M
-rw-r--r-- 1 mcc users 9.7K May 29 14:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 84K May 29 14:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K May 29 14:47 CTLFireability.txt
-rw-r--r-- 1 mcc users 37K May 29 14:47 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 29 14:32 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.8K May 29 14:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 28K May 29 14:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.5K May 29 14:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 21K May 29 14:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 17K May 29 14:47 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 131K May 29 14:47 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 15K May 29 14:47 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 88K May 29 14:47 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K May 29 14:47 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.4K May 29 14:47 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 29 14:32 equiv_col
-rw-r--r-- 1 mcc users 10 May 29 14:32 instance
-rw-r--r-- 1 mcc users 6 May 29 14:32 iscolored
-rwxr-xr-x 1 mcc users 14M May 29 14:32 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1748765587295

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=HypercubeGrid-PT-C5K3P3B15
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
ReachabilityDeadlock PT
Running Version 202505121319
[2025-06-01 08:13:08] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2025-06-01 08:13:08] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2025-06-01 08:13:09] [INFO ] Load time of PNML (sax parser for PT used): 659 ms
[2025-06-01 08:13:09] [INFO ] Transformed 9153 places.
[2025-06-01 08:13:09] [INFO ] Transformed 25110 transitions.
[2025-06-01 08:13:09] [INFO ] Parsed PT model containing 9153 places and 25110 transitions and 100440 arcs in 895 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 3 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 29 ms.72217KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 2069 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 2085 ms. Remains : 9153/9153 places, 25110/25110 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 1974 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
// Phase 1: matrix 25110 rows 9153 cols
[2025-06-01 08:13:14] [INFO ] Computed 3484 invariants in 1207 ms
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-06-01 08:13:29] [INFO ] Implicit Places using invariants in 15867 ms returned []
Implicit Place search using SMT only with invariants took 15909 ms to find 0 implicit places.
Running 22680 sub problems to find dead transitions.
[2025-06-01 08:13:29] [INFO ] Invariant cache hit.
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30501 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 22680/22680 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 22680 unsolved
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Error getting values : (error "Error writing to Z3 solver: java.io.IOException: Broken pipe")
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30270 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 0/22680 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 132546ms problems are : Problem set: 0 solved, 22680 unsolved
Search for dead transitions found 0 dead transitions in 132750ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 150749 ms. Remains : 9153/9153 places, 25110/25110 transitions.
Interrupted Random walk after 40290 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:16:12] [INFO ] Invariant cache hit.
Starting Z3 with timeout 300.0 s and query timeout 30000.0 ms
[2025-06-01 08:16:49] [INFO ] [Real]Absence check using 3483 positive place invariants in 31417 ms returned sat
[2025-06-01 08:17:20] [INFO ] SMT solver returned unknown. Retrying;
[2025-06-01 08:17:50] [INFO ] [Real]Absence check using 3483 positive and 1 generalized place invariants in 60033 ms returned unknown
Interrupted Random directed walk after 70584 steps, including 0 resets, run timeout after 30627 ms. (steps per millisecond=2 )
Interrupted Random walk after 41866 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 70659 steps, including 0 resets, run timeout after 30332 ms. (steps per millisecond=2 )
Interrupted Random walk after 41926 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 1259 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
[2025-06-01 08:19:52] [INFO ] Invariant cache hit.
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-06-01 08:20:05] [INFO ] Implicit Places using invariants in 13541 ms returned []
Implicit Place search using SMT only with invariants took 13564 ms to find 0 implicit places.
Running 22680 sub problems to find dead transitions.
[2025-06-01 08:20:05] [INFO ] Invariant cache hit.
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30342 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 22680/22680 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 22680 unsolved
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30253 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 0/22680 constraints, Known Traps: 0/0 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 129432ms problems are : Problem set: 0 solved, 22680 unsolved
Search for dead transitions found 0 dead transitions in 129493ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 144375 ms. Remains : 9153/9153 places, 25110/25110 transitions.
Interrupted Random walk after 41549 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:22:45] [INFO ] Invariant cache hit.
Starting Z3 with timeout 300.0 s and query timeout 30000.0 ms
[2025-06-01 08:23:19] [INFO ] [Real]Absence check using 3483 positive place invariants in 29290 ms returned sat
[2025-06-01 08:23:49] [INFO ] SMT solver returned unknown. Retrying;
[2025-06-01 08:24:19] [INFO ] [Real]Absence check using 3483 positive and 1 generalized place invariants in 60020 ms returned unknown
Interrupted Random directed walk after 70848 steps, including 0 resets, run timeout after 30833 ms. (steps per millisecond=2 )
Interrupted Random walk after 41540 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 70617 steps, including 0 resets, run timeout after 30428 ms. (steps per millisecond=2 )
Interrupted Random walk after 41973 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2025-06-01 08:26:22] [INFO ] Flatten gal took : 1223 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin8948711875273426578
[2025-06-01 08:26:23] [INFO ] Too many transitions (25110) to apply POR reductions. Disabling POR matrices.
[2025-06-01 08:26:23] [INFO ] Built C files in 339ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin8948711875273426578
Running compilation step : cd /tmp/ltsmin8948711875273426578;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202505121319/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202505121319/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
[2025-06-01 08:26:23] [INFO ] Applying decomposition
[2025-06-01 08:26:24] [INFO ] Flatten gal took : 1112 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/convert-linux64' '-i' '/tmp/graph3380617018096933391.txt' '-o' '/tmp/graph3380617018096933391.bin' '-w' '/tmp/graph3380617018096933391.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/louvain-linux64' '/tmp/graph3380617018096933391.bin' '-l' '-1' '-v' '-w' '/tmp/graph3380617018096933391.weights' '-q' '0' '-e' '0.001'
[2025-06-01 08:26:27] [INFO ] Decomposing Gal with order
[2025-06-01 08:26:28] [INFO ] Rewriting arrays to variables to allow decomposition.
[2025-06-01 08:26:46] [INFO ] Removed a total of 38880 redundant transitions.
[2025-06-01 08:26:47] [INFO ] Flatten gal took : 1473 ms
[2025-06-01 08:26:47] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 125 ms.
[2025-06-01 08:26:47] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock4400675193172633842.gal : 181 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock4400675193172633842.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK'

its-ctl command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -...234
No direction supplied, using forward translation only.

BK_STOP 1748766735740

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202505121319.jar
+ VERSION=202505121319
+ echo 'Running Version 202505121319'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HypercubeGrid-PT-C5K3P3B15"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5832"
echo " Executing tool itstools"
echo " Input is HypercubeGrid-PT-C5K3P3B15, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r119-tall-174876430000171"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/HypercubeGrid-PT-C5K3P3B15.tgz
mv HypercubeGrid-PT-C5K3P3B15 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;