Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/data/fkordon/mcc2025-input.r114-tall-174876423600896.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2025-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-5832
Executing tool itstools
Input is MAPKbis-PT-5310, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r114-tall-174876423600896
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 732K
-rw-r--r-- 1 mcc users 8.3K May 29 14:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 73K May 29 14:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 14K May 29 14:47 CTLFireability.txt
-rw-r--r-- 1 mcc users 61K May 29 14:47 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 29 14:32 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.3K May 29 14:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 29 14:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 5.5K May 29 14:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 22K May 29 14:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 17K May 29 14:47 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 145K May 29 14:47 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 26K May 29 14:47 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 99K May 29 14:47 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 29 14:47 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 29 14:47 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 29 14:32 equiv_col
-rw-r--r-- 1 mcc users 5 May 29 14:32 instance
-rw-r--r-- 1 mcc users 6 May 29 14:32 iscolored
-rw-r--r-- 1 mcc users 170K May 29 14:32 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1748921518411

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=StateSpace
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=MAPKbis-PT-5310
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
StateSpace PT
Running Version 202505121319
[2025-06-03 03:31:59] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2025-06-03 03:31:59] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2025-06-03 03:32:00] [INFO ] Load time of PNML (sax parser for PT used): 82 ms
[2025-06-03 03:32:00] [INFO ] Transformed 106 places.
[2025-06-03 03:32:00] [INFO ] Transformed 173 transitions.
[2025-06-03 03:32:00] [INFO ] Found NUPN structural information;
[2025-06-03 03:32:00] [INFO ] Parsed PT model containing 106 places and 173 transitions and 986 arcs in 189 ms.
Deduced a syphon composed of 11 places in 1 ms
Reduce places removed 15 places and 41 transitions.
Reduce places removed 7 places and 0 transitions.
Starting structural reductions in STATESPACE mode, iteration 0 : 84/84 places, 132/132 transitions.
Ensure Unique test removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Starting Z3 with timeout 200.0 s and query timeout 20000.0 ms
[2025-06-03 03:32:00] [INFO ] Redundant transitions in 5 ms returned []
Running 129 sub problems to find dead transitions.
[2025-06-03 03:32:00] [INFO ] Flow matrix only has 84 transitions (discarded 46 similar events)
// Phase 1: matrix 84 rows 84 cols
[2025-06-03 03:32:00] [INFO ] Computed 42 invariants in 9 ms
[2025-06-03 03:32:00] [INFO ] State equation strengthened by 42 read => feed constraints.
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/84 variables, 84/84 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/84 variables, 42/126 constraints. Problems are: Problem set: 0 solved, 129 unsolved
Starting Z3 with timeout 120.0 s and query timeout 12000.0 ms
[2025-06-03 03:32:00] [INFO ] Deduced a trap composed of 3 places in 40 ms of which 9 ms to minimize.
At refinement iteration 2 (INCLUDED_ONLY) 0/84 variables, 1/127 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/84 variables, 0/127 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 4 (OVERLAPS) 84/168 variables, 84/211 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/168 variables, 42/253 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/168 variables, 0/253 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 7 (OVERLAPS) 0/168 variables, 0/253 constraints. Problems are: Problem set: 0 solved, 129 unsolved
No progress, stopping.
After SMT solving in domain Real declared 168/168 variables, and 253 constraints, problems are : Problem set: 0 solved, 129 unsolved in 3648 ms.
Refiners :[Domain max(s): 84/84 constraints, Positive P Invariants (semi-flows): 42/42 constraints, State Equation: 84/84 constraints, ReadFeed: 42/42 constraints, PredecessorRefiner: 129/129 constraints, Known Traps: 1/1 constraints, Known Traps Along Path: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 129 unsolved
Starting Z3 with timeout 30.0 s and query timeout 3000.0 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/84 variables, 84/84 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/84 variables, 42/126 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/84 variables, 1/127 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/84 variables, 0/127 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 4 (OVERLAPS) 84/168 variables, 84/211 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/168 variables, 42/253 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/168 variables, 129/382 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 7 (INCLUDED_ONLY) 0/168 variables, 0/382 constraints. Problems are: Problem set: 0 solved, 129 unsolved
At refinement iteration 8 (OVERLAPS) 0/168 variables, 0/382 constraints. Problems are: Problem set: 0 solved, 129 unsolved
No progress, stopping.
After SMT solving in domain Int declared 168/168 variables, and 382 constraints, problems are : Problem set: 0 solved, 129 unsolved in 2801 ms.
Refiners :[Domain max(s): 84/84 constraints, Positive P Invariants (semi-flows): 42/42 constraints, State Equation: 84/84 constraints, ReadFeed: 42/42 constraints, PredecessorRefiner: 129/129 constraints, Known Traps: 1/1 constraints, Known Traps Along Path: 0/0 constraints]
After SMT, in 6548ms problems are : Problem set: 0 solved, 129 unsolved
Search for dead transitions found 0 dead transitions in 6562ms
Starting structural reductions in STATESPACE mode, iteration 1 : 84/84 places, 130/132 transitions.
Finished structural reductions in STATESPACE mode , in 1 iterations and 6685 ms. Remains : 84/84 places, 130/132 transitions.
Final net has 84 places and 130 transitions.
[2025-06-03 03:32:06] [INFO ] Flatten gal took : 39 ms
[2025-06-03 03:32:06] [INFO ] Applying decomposition
[2025-06-03 03:32:06] [INFO ] Flatten gal took : 11 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/convert-linux64' '-i' '/tmp/graph6171243522688600773.txt' '-o' '/tmp/graph6171243522688600773.bin' '-w' '/tmp/graph6171243522688600773.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202505121319/bin/louvain-linux64' '/tmp/graph6171243522688600773.bin' '-l' '-1' '-v' '-w' '/tmp/graph6171243522688600773.weights' '-q' '0' '-e' '0.001'
[2025-06-03 03:32:07] [INFO ] Decomposing Gal with order
[2025-06-03 03:32:07] [INFO ] Rewriting arrays to variables to allow decomposition.
[2025-06-03 03:32:07] [INFO ] Removed a total of 175 redundant transitions.
[2025-06-03 03:32:07] [INFO ] Flatten gal took : 53 ms
[2025-06-03 03:32:07] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 5 ms.
[2025-06-03 03:32:07] [INFO ] Time to serialize gal into /tmp/StateSpace15063618596943205155.gal : 7 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace15063618596943205155.gal' '-t' 'CGAL' '--stats'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...220
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst\_mod\_flat,3.84641e+12,0.748704,30076,71,6,46694,54,383,123929,11,64,0
Total reachable state count : 3846411649024

Max variable value : 1
STATE_SPACE MAX_TOKEN_IN_PLACE 1 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Maximum sum along a path : 42
STATE_SPACE MAX_TOKEN_PER_MARKING 53 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Exact state count : 3846411649024
STATE_SPACE STATES 3846411649024 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Total runtime 8145 ms.

BK_STOP 1748921528029

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StateSpace = StateSpace ]]
+ [[ -f modelMain.xml ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202505121319.jar
+ VERSION=202505121319
+ echo 'Running Version 202505121319'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5832"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5310, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r114-tall-174876423600896"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;