Execution Chart

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Trace from the execution

Formatting '/data/fkordon/mcc2025-input.r007-tall-174853737000152.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2025-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5832
Executing tool itstools
Input is Angiogenesis-PT-15, examination is QuasiLiveness
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-174853737000152
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 592K
-rw-r--r-- 1 mcc users 8.5K May 29 14:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 88K May 29 14:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.7K May 29 14:47 CTLFireability.txt
-rw-r--r-- 1 mcc users 55K May 29 14:47 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 29 14:32 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.2K May 29 14:47 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 29 14:47 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 29 14:47 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 29 14:47 LTLFireability.xml
-rw-r--r-- 1 mcc users 15K May 29 14:47 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 139K May 29 14:47 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 14K May 29 14:47 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 129K May 29 14:47 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 29 14:47 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 29 14:47 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 29 14:32 equiv_col
-rw-r--r-- 1 mcc users 3 May 29 14:32 instance
-rw-r--r-- 1 mcc users 6 May 29 14:32 iscolored
-rw-r--r-- 1 mcc users 33K May 29 14:32 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME QuasiLiveness

=== Now, execution of the tool begins

BK_START 1748541250147

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=QuasiLiveness
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=Angiogenesis-PT-15
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
QuasiLiveness PT
Running Version 202505121319
[2025-05-29 17:54:11] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, QuasiLiveness, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2025-05-29 17:54:11] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2025-05-29 17:54:11] [INFO ] Load time of PNML (sax parser for PT used): 49 ms
[2025-05-29 17:54:11] [INFO ] Transformed 39 places.
[2025-05-29 17:54:11] [INFO ] Transformed 64 transitions.
[2025-05-29 17:54:11] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 142 ms.
Starting structural reductions in LIVENESS mode, iteration 0 : 39/39 places, 64/64 transitions.
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 1 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 1 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 10 Post agglomeration using F-continuation condition.Transition count delta: 10
Deduced a syphon composed of 10 places in 0 ms
Reduce places removed 10 places and 0 transitions.
Iterating global reduction 1 with 20 rules applied. Total rules applied 24 place count 26 transition count 53
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: -6
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 1 with 10 rules applied. Total rules applied 34 place count 21 transition count 59
Applied a total of 34 rules in 29 ms. Remains 21 /39 variables (removed 18) and now considering 59/64 (removed 5) transitions.
[2025-05-29 17:54:11] [INFO ] Flow matrix only has 38 transitions (discarded 21 similar events)
// Phase 1: matrix 38 rows 21 cols
[2025-05-29 17:54:11] [INFO ] Computed 6 invariants in 6 ms
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-05-29 17:54:11] [INFO ] Implicit Places using invariants in 166 ms returned [17, 19]
Discarding 2 places :
Implicit Place search using SMT only with invariants took 197 ms to find 2 implicit places.
Starting structural reductions in LIVENESS mode, iteration 1 : 19/39 places, 59/64 transitions.
Graph (trivial) has 12 edges and 19 vertex of which 4 / 19 are part of one of the 2 SCC in 2 ms
Free SCC test removed 2 places
Ensure Unique test removed 4 transitions
Reduce isomorphic transitions removed 4 transitions.
Applied a total of 1 rules in 6 ms. Remains 17 /19 variables (removed 2) and now considering 55/59 (removed 4) transitions.
[2025-05-29 17:54:11] [INFO ] Flow matrix only has 32 transitions (discarded 23 similar events)
// Phase 1: matrix 32 rows 17 cols
[2025-05-29 17:54:11] [INFO ] Computed 4 invariants in 1 ms
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-05-29 17:54:11] [INFO ] Implicit Places using invariants in 37 ms returned []
[2025-05-29 17:54:11] [INFO ] Flow matrix only has 32 transitions (discarded 23 similar events)
[2025-05-29 17:54:11] [INFO ] Invariant cache hit.
Starting Z3 with timeout 160.0 s and query timeout 16000.0 ms
[2025-05-29 17:54:11] [INFO ] State equation strengthened by 3 read => feed constraints.
[2025-05-29 17:54:11] [INFO ] Implicit Places using invariants and state equation in 56 ms returned []
Implicit Place search using SMT with State Equation took 96 ms to find 0 implicit places.
Starting structural reductions in LIVENESS mode, iteration 2 : 17/39 places, 55/64 transitions.
Finished structural reductions in LIVENESS mode , in 2 iterations and 345 ms. Remains : 17/39 places, 55/64 transitions.
Discarding 37 transitions out of 55. Remains 18
Initial state reduction rules removed 2 formulas.
RANDOM walk for 35492 steps (30 resets) in 422 ms. (83 steps per ms) remains 0/16 properties
[2025-05-29 17:54:12] [INFO ] Flatten gal took : 24 ms
[2025-05-29 17:54:12] [INFO ] Flatten gal took : 7 ms
[2025-05-29 17:54:12] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3247193690272046084.gal : 5 ms
[2025-05-29 17:54:12] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality1293386361985380304.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality3247193690272046084.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality1293386361985380304.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202505121319/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...328
Loading property file /tmp/ReachabilityCardinality1293386361985380304.prop.
ITS runner timed out or was interrupted.
Found states matching all0 target predicate
Will report total states built up to this point. Computation was interrupted after 3 fixpoint passes
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst,7,0.015983,4248,2,46,5,118,6,0,120,45,0
Total reachable state count : 7

ITS tools runner thread asked to quit. Dying gracefully.
Able to resolve query QuasiLiveness after proving 18 properties.
FORMULA QuasiLiveness TRUE TECHNIQUES RANDOM_WALK TOPOLOGICAL INITIAL_STATE
Total runtime 845 ms.

BK_STOP 1748541252266

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ QuasiLiveness = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution QuasiLiveness -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202505121319.jar
+ VERSION=202505121319
+ echo 'Running Version 202505121319'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination QuasiLiveness -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="QuasiLiveness"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5832"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-15, examination is QuasiLiveness"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-174853737000152"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "QuasiLiveness" = "ReachabilityDeadlock" ] || [ "QuasiLiveness" = "UpperBounds" ] || [ "QuasiLiveness" = "QuasiLiveness" ] || [ "QuasiLiveness" = "StableMarking" ] || [ "QuasiLiveness" = "Liveness" ] || [ "QuasiLiveness" = "OneSafe" ] || [ "QuasiLiveness" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "QuasiLiveness" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "QuasiLiveness" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "QuasiLiveness.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' QuasiLiveness.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "QuasiLiveness" = "ReachabilityDeadlock" ] || [ "QuasiLiveness" = "QuasiLiveness" ] || [ "QuasiLiveness" = "StableMarking" ] || [ "QuasiLiveness" = "Liveness" ] || [ "QuasiLiveness" = "OneSafe" ] ; then
echo "FORMULA_NAME QuasiLiveness"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;