Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r254-tall-171654363600176.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-5568
Executing tool greatspnxred
Input is Murphy-COL-D4N050, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r254-tall-171654363600176
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 436K
-rw-r--r-- 1 mcc users 5.6K Apr 11 22:52 CTLCardinality.txt
-rw-r--r-- 1 mcc users 57K Apr 11 22:52 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.5K Apr 11 22:48 CTLFireability.txt
-rw-r--r-- 1 mcc users 40K Apr 11 22:48 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.4K May 6 10:01 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K May 6 10:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 6 10:01 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 6 10:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K Apr 11 22:56 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 138K Apr 11 22:56 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 6.9K Apr 11 22:55 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 62K Apr 11 22:55 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 6 10:01 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 6 10:01 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 18 16:43 equiv_pt
-rw-r--r-- 1 mcc users 7 May 18 16:43 instance
-rw-r--r-- 1 mcc users 5 May 18 16:43 iscolored
-rw-r--r-- 1 mcc users 20K May 18 16:43 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1716636035101

Invoking MCC driver with
BK_TOOL=greatspnxred
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=Murphy-COL-D4N050
BK_MEMORY_CONFINEMENT=16384
Applying reductions before tool greatspn
Invoking reducer
Running Version 202405141337
[2024-05-25 11:20:36] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -timeout, 180, -rebuildPNML]
[2024-05-25 11:20:36] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-25 11:20:36] [INFO ] Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
log4j:WARN No appenders could be found for logger (org.apache.axiom.locator.DefaultOMMetaFactoryLocator).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
[2024-05-25 11:20:36] [WARNING] Using fallBack plugin, rng conformance not checked
[2024-05-25 11:20:36] [INFO ] Load time of PNML (colored model parsed with PNMLFW) : 544 ms
[2024-05-25 11:20:36] [INFO ] Imported 6 HL places and 7 HL transitions for a total of 30 PT places and 35.0 transition bindings in 20 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 2 ms.
Working with output stream class java.io.PrintStream
[2024-05-25 11:20:36] [INFO ] Built PT skeleton of HLPN with 6 places and 7 transitions 27 arcs in 4 ms.
[2024-05-25 11:20:36] [INFO ] Skeletonized 1 HLPN properties in 0 ms.
Computed a total of 0 stabilizing places and 0 stable transitions
Prefix of Interest using HLPN skeleton for deadlock discarded 0 places and 0 transitions.
Arc [0:1*[(MOD (ADD $x 1) 5)]] contains successor/predecessor on variables of sort CD
[2024-05-25 11:20:37] [INFO ] Unfolded HLPN to a Petri net with 30 places and 35 transitions 135 arcs in 14 ms.
[2024-05-25 11:20:37] [INFO ] Unfolded 1 HLPN properties in 0 ms.
Built sparse matrix representations for Structural reductions in 0 ms.25517KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 30/30 places, 35/35 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 12 ms. Remains 30 /30 variables (removed 0) and now considering 35/35 (removed 0) transitions.
Running 20 sub problems to find dead transitions.
// Phase 1: matrix 35 rows 30 cols
[2024-05-25 11:20:37] [INFO ] Computed 6 invariants in 7 ms
[2024-05-25 11:20:37] [INFO ] State equation strengthened by 10 read => feed constraints.
At refinement iteration 0 (INCLUDED_ONLY) 0/20 variables, 4/4 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/20 variables, 0/4 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 2 (OVERLAPS) 5/25 variables, 2/6 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/25 variables, 0/6 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 4 (OVERLAPS) 35/60 variables, 25/31 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/60 variables, 10/41 constraints. Problems are: Problem set: 0 solved, 20 unsolved
All remaining problems are real, not stopping.
At refinement iteration 6 (INCLUDED_ONLY) 0/60 variables, 0/41 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 7 (OVERLAPS) 5/65 variables, 5/46 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 8 (INCLUDED_ONLY) 0/65 variables, 0/46 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 9 (OVERLAPS) 0/65 variables, 0/46 constraints. Problems are: Problem set: 0 solved, 20 unsolved
No progress, stopping.
After SMT solving in domain Real declared 65/65 variables, and 46 constraints, problems are : Problem set: 0 solved, 20 unsolved in 463 ms.
Refiners :[Positive P Invariants (semi-flows): 2/2 constraints, Generalized P Invariants (flows): 4/4 constraints, State Equation: 30/30 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 20/20 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 20 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/20 variables, 4/4 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 1 (INCLUDED_ONLY) 0/20 variables, 0/4 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 2 (OVERLAPS) 5/25 variables, 2/6 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/25 variables, 0/6 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 4 (OVERLAPS) 35/60 variables, 25/31 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/60 variables, 10/41 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/60 variables, 0/41 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 7 (OVERLAPS) 5/65 variables, 5/46 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 8 (INCLUDED_ONLY) 0/65 variables, 20/66 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 9 (INCLUDED_ONLY) 0/65 variables, 0/66 constraints. Problems are: Problem set: 0 solved, 20 unsolved
At refinement iteration 10 (OVERLAPS) 0/65 variables, 0/66 constraints. Problems are: Problem set: 0 solved, 20 unsolved
No progress, stopping.
After SMT solving in domain Int declared 65/65 variables, and 66 constraints, problems are : Problem set: 0 solved, 20 unsolved in 280 ms.
Refiners :[Positive P Invariants (semi-flows): 2/2 constraints, Generalized P Invariants (flows): 4/4 constraints, State Equation: 30/30 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 20/20 constraints, Known Traps: 0/0 constraints]
After SMT, in 802ms problems are : Problem set: 0 solved, 20 unsolved
Search for dead transitions found 0 dead transitions in 814ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 862 ms. Remains : 30/30 places, 35/35 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 30/30 places, 35/35 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 3 ms. Remains 30 /30 variables (removed 0) and now considering 35/35 (removed 0) transitions.
[2024-05-25 11:20:37] [INFO ] Invariant cache hit.
[2024-05-25 11:20:37] [INFO ] Implicit Places using invariants in 47 ms returned [10, 11, 12, 13, 14]
Discarding 5 places :
Implicit Place search using SMT only with invariants took 59 ms to find 5 implicit places.
Starting structural reductions in DEADLOCK mode, iteration 1 : 25/30 places, 35/35 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 3 ms. Remains 25 /25 variables (removed 0) and now considering 35/35 (removed 0) transitions.
Finished structural reductions in DEADLOCK mode , in 2 iterations and 65 ms. Remains : 25/30 places, 35/35 transitions.
Random walk for 1250000 steps, including 0 resets, run took 666 ms (no deadlock found). (steps per millisecond=1876 )
Random directed walk for 1250001 steps, including 0 resets, run took 771 ms (no deadlock found). (steps per millisecond=1621 )
// Phase 1: matrix 35 rows 25 cols
[2024-05-25 11:20:39] [INFO ] Computed 1 invariants in 3 ms
[2024-05-25 11:20:39] [INFO ] [Real]Absence check using 1 positive place invariants in 0 ms returned sat
[2024-05-25 11:20:39] [INFO ] [Real]Absence check using state equation in 8 ms returned unsat
FORMULA ReachabilityDeadlock FALSE TECHNIQUES TOPOLOGICAL SAT_SMT STRUCTURAL_REDUCTION
Total runtime 3166 ms.
ITS solved all properties within timeout

BK_STOP 1716636039491

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -timeout 180 -rebuildPNML

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Murphy-COL-D4N050"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="greatspnxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool greatspnxred"
echo " Input is Murphy-COL-D4N050, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r254-tall-171654363600176"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Murphy-COL-D4N050.tgz
mv Murphy-COL-D4N050 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;