Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r224-tall-171649612700405.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool itstools
Input is LeafsetExtension-PT-S64C4, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r224-tall-171649612700405
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 14M
-rw-r--r-- 1 mcc users 11K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 69K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 11K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 61K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 5.3K May 19 07:11 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 19 16:04 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.9K May 19 07:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 19 18:35 LTLFireability.xml
-rw-r--r-- 1 mcc users 20K Apr 12 13:51 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 122K Apr 12 13:51 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 13K Apr 12 13:50 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 55K Apr 12 13:50 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.3K Apr 22 14:51 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.3K Apr 22 14:51 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 6 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 14M May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-00
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-01
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-02
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-03
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-04
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-05
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-06
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-07
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-08
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-09
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-10
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-11
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-12
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-13
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-14
FORMULA_NAME LeafsetExtension-PT-S64C4-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1716587908250

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=UpperBounds
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=LeafsetExtension-PT-S64C4
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is PT
UpperBounds PT
Running Version 202405141337
[2024-05-24 21:58:29] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2024-05-24 21:58:29] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-24 21:58:30] [INFO ] Load time of PNML (sax parser for PT used): 688 ms
[2024-05-24 21:58:30] [INFO ] Transformed 21462 places.
[2024-05-24 21:58:30] [INFO ] Transformed 21129 transitions.
[2024-05-24 21:58:30] [INFO ] Parsed PT model containing 21462 places and 21129 transitions and 67740 arcs in 911 ms.
Parsed 16 properties from file /home/mcc/execution/UpperBounds.xml in 38 ms.
Current structural bounds on expressions (Initially) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Max Struct:[+inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf]
Current structural bounds on expressions (Before main loop) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Max Struct:[+inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf, +inf]
// Phase 1: matrix 21129 rows 21462 cols
[2024-05-24 21:58:33] [INFO ] Computed 333 invariants in 2741 ms
Current structural bounds on expressions (after invariants) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] Max Struct:[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, +inf]
RANDOM walk for 10000 steps (300 resets) in 258 ms. (38 steps per ms)
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-12 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-11 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-06 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-00 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-03 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
BEST_FIRST walk for 110011 steps (104 resets) in 244 ms. (449 steps per ms)
Current structural bounds on expressions (after WALK) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1] Max Struct:[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, +inf]
[2024-05-24 21:58:33] [INFO ] Invariant cache hit.
Current structural bounds on expressions (after SMT) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1] Max Struct:[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, +inf]
Current structural bounds on expressions (After Parikh guided walk) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1] Max Struct:[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, +inf]
Support contains 11 out of 21462 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 21462/21462 places, 21129/21129 transitions.
Graph (complete) has 42457 edges and 21462 vertex of which 681 are kept as prefixes of interest. Removing 20781 places using SCC suffix rule.30 ms
Discarding 20781 places :
Also discarding 12185 output transitions
Drop transitions (Output transitions of discarded places.) removed 12185 transitions
Drop transitions (Empty/Sink Transition effects.) removed 4243 transitions
Reduce isomorphic transitions removed 4243 transitions.
Discarding 2 places :
Implicit places reduction removed 2 places
Drop transitions (Trivial Post-Agglo cleanup.) removed 190 transitions
Trivial Post-agglo rules discarded 190 transitions
Performed 190 trivial Post agglomeration. Transition count delta: 190
Iterating post reduction 0 with 4435 rules applied. Total rules applied 4436 place count 679 transition count 4511
Reduce places removed 192 places and 0 transitions.
Drop transitions (Trivial Post-Agglo cleanup.) removed 6 transitions
Trivial Post-agglo rules discarded 6 transitions
Performed 6 trivial Post agglomeration. Transition count delta: 6
Iterating post reduction 1 with 198 rules applied. Total rules applied 4634 place count 487 transition count 4505
Reduce places removed 6 places and 0 transitions.
Iterating post reduction 2 with 6 rules applied. Total rules applied 4640 place count 481 transition count 4505
Performed 7 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 3 with 7 Pre rules applied. Total rules applied 4640 place count 481 transition count 4498
Deduced a syphon composed of 7 places in 1 ms
Reduce places removed 7 places and 0 transitions.
Iterating global reduction 3 with 14 rules applied. Total rules applied 4654 place count 474 transition count 4498
Discarding 31 places :
Symmetric choice reduction at 3 with 31 rule applications. Total rules 4685 place count 443 transition count 4467
Iterating global reduction 3 with 31 rules applied. Total rules applied 4716 place count 443 transition count 4467
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 2 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 3 with 2 rules applied. Total rules applied 4718 place count 442 transition count 4466
Free-agglomeration rule (complex) applied 4 times.
Iterating global reduction 3 with 4 rules applied. Total rules applied 4722 place count 442 transition count 4462
Reduce places removed 4 places and 0 transitions.
Iterating post reduction 3 with 4 rules applied. Total rules applied 4726 place count 438 transition count 4462
Partial Free-agglomeration rule applied 216 times.
Drop transitions (Partial Free agglomeration) removed 216 transitions
Iterating global reduction 4 with 216 rules applied. Total rules applied 4942 place count 438 transition count 4462
Discarding 5 places :
Implicit places reduction removed 5 places
Iterating post reduction 4 with 5 rules applied. Total rules applied 4947 place count 433 transition count 4462
Free-agglomeration rule (complex) applied 3 times.
Iterating global reduction 5 with 3 rules applied. Total rules applied 4950 place count 433 transition count 4459
Reduce places removed 3 places and 0 transitions.
Iterating post reduction 5 with 3 rules applied. Total rules applied 4953 place count 430 transition count 4459
Applied a total of 4953 rules in 845 ms. Remains 430 /21462 variables (removed 21032) and now considering 4459/21129 (removed 16670) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 859 ms. Remains : 430/21462 places, 4459/21129 transitions.
[2024-05-24 21:59:02] [INFO ] Flow matrix only has 592 transitions (discarded 3867 similar events)
When looking for a positive semi flow solution, solver replied unsat
[2024-05-24 21:59:02] [INFO ] Flow matrix only has 592 transitions (discarded 3867 similar events)
// Phase 1: matrix 592 rows 430 cols
[2024-05-24 21:59:02] [INFO ] Computed 2 invariants in 11 ms
Current structural bounds on expressions (after invariants) : Max Seen:[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1] Max Struct:[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, +inf]
RANDOM walk for 1000000 steps (96417 resets) in 8145 ms. (122 steps per ms)
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-14 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-13 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-10 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-09 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-08 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-07 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-05 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-04 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-02 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-01 1 TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
BEST_FIRST walk for 1000000 steps (2809 resets) in 1482 ms. (674 steps per ms)
Current structural bounds on expressions (after WALK) : Max Seen:[4] Max Struct:[+inf]
[2024-05-24 21:59:12] [INFO ] Flow matrix only has 592 transitions (discarded 3867 similar events)
[2024-05-24 21:59:12] [INFO ] Invariant cache hit.
[2024-05-24 21:59:12] [INFO ] [Real]Absence check using 0 positive and 2 generalized place invariants in 4 ms returned sat
[2024-05-24 21:59:12] [INFO ] [Real]Absence check using state equation in 122 ms returned unsat
Current structural bounds on expressions (after SMT) : Max Seen:[4] Max Struct:[4]
FORMULA LeafsetExtension-PT-S64C4-UpperBounds-15 4 TECHNIQUES TOPOLOGICAL SAT_SMT RANDOM_WALK
Current structural bounds on expressions (After Parikh guided walk) : Max Seen:[] Max Struct:[]
RANDOM walk for 0 steps (0 resets) in 4 ms. (0 steps per ms) remains 0/0 properties
Finished probabilistic random walk after 0 steps, run visited all 0 properties in 0 ms. (steps per millisecond=0 )
[2024-05-24 21:59:13] [INFO ] Flatten gal took : 285 ms
[2024-05-24 21:59:13] [INFO ] Flatten gal took : 137 ms
[2024-05-24 21:59:13] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality16120740908085756974.gal : 53 ms
[2024-05-24 21:59:13] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality9462689571887923550.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality16120740908085756974.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality9462689571887923550.prop' '--nowitness' '--gen-order' 'FOLLOW'

ITS runner timed out or was interrupted.
its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
ITS tools runner thread asked to quit. Dying gracefully.
java.io.IOException: Stream closed
at java.base/java.io.BufferedInputStream.getBufIfOpen(BufferedInputStream.java:168)
at java.base/java.io.BufferedInputStream.read(BufferedInputStream.java:334)
at java.base/sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:270)
at java.base/sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:313)
at java.base/sun.nio.cs.StreamDecoder.read(StreamDecoder.java:188)
at java.base/java.io.InputStreamReader.read(InputStreamReader.java:177)
at java.base/java.io.BufferedReader.fill(BufferedReader.java:162)
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:329)
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:396)
at fr.lip6.move.gal.application.runner.its.ITSRunner$ITSInterpreter.run(ITSRunner.java:211)
at java.base/java.lang.Thread.run(Thread.java:840)
Current structural bounds on expressions (After reachability solving 0 queries.) : Max Seen:[] Max Struct:[]
All properties solved without resorting to model-checking.
Total runtime 44094 ms.

BK_STOP 1716587953505

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="LeafsetExtension-PT-S64C4"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool itstools"
echo " Input is LeafsetExtension-PT-S64C4, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r224-tall-171649612700405"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/LeafsetExtension-PT-S64C4.tgz
mv LeafsetExtension-PT-S64C4 execution
cd execution
if [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "UpperBounds" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] || [ "UpperBounds" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] ; then
echo "FORMULA_NAME UpperBounds"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;