Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r210-smll-171649593900171.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool greatspnxred
Input is HypercubeGrid-PT-C5K3P3B15, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r210-smll-171649593900171
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 15M
-rw-r--r-- 1 mcc users 6.4K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 47K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.4K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 56K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.5K May 19 07:10 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 19 16:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K May 19 07:19 LTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 19 18:33 LTLFireability.xml
-rw-r--r-- 1 mcc users 15K Apr 13 20:08 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 117K Apr 13 20:08 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 15K Apr 13 07:01 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 86K Apr 13 07:01 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 19 07:12 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 19 15:27 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 10 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rwxr-xr-x 1 mcc users 14M May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1716625108311

Invoking MCC driver with
BK_TOOL=greatspnxred
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=HypercubeGrid-PT-C5K3P3B15
BK_MEMORY_CONFINEMENT=16384
Applying reductions before tool greatspn
Invoking reducer
Running Version 202405141337
[2024-05-25 08:18:30] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -timeout, 180, -rebuildPNML]
[2024-05-25 08:18:30] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-25 08:18:32] [INFO ] Load time of PNML (sax parser for PT used): 1475 ms
[2024-05-25 08:18:32] [INFO ] Transformed 9153 places.
[2024-05-25 08:18:33] [INFO ] Transformed 25110 transitions.
[2024-05-25 08:18:33] [INFO ] Parsed PT model containing 9153 places and 25110 transitions and 100440 arcs in 2076 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 7 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 55 ms.59386KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 3187 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 3224 ms. Remains : 9153/9153 places, 25110/25110 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 3016 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
// Phase 1: matrix 25110 rows 9153 cols
[2024-05-25 08:18:41] [INFO ] Computed 3484 invariants in 1643 ms
[2024-05-25 08:19:12] [INFO ] Implicit Places using invariants in 32746 ms returned []
Implicit Place search using SMT only with invariants took 32809 ms to find 0 implicit places.
Running 22680 sub problems to find dead transitions.
[2024-05-25 08:19:13] [INFO ] Invariant cache hit.
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30748 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 22680/22680 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 22680 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/4293 variables, 810/810 constraints. Problems are: Problem set: 0 solved, 22680 unsolved
Error getting values : (error "Error writing to Z3 solver: java.io.IOException: Broken pipe")
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 4293/34263 variables, and 810 constraints, problems are : Problem set: 0 solved, 22680 unsolved in 30532 ms.
Refiners :[Positive P Invariants (semi-flows): 810/3483 constraints, Generalized P Invariants (flows): 0/1 constraints, State Equation: 0/9153 constraints, PredecessorRefiner: 0/22680 constraints, Known Traps: 0/0 constraints]
After SMT, in 165191ms problems are : Problem set: 0 solved, 22680 unsolved
Search for dead transitions found 0 dead transitions in 165749ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 201767 ms. Remains : 9153/9153 places, 25110/25110 transitions.
Interrupted Random walk after 32168 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2024-05-25 08:22:28] [INFO ] Invariant cache hit.
[2024-05-25 08:23:13] [INFO ] [Real]Absence check using 3483 positive place invariants in 36856 ms returned sat
[2024-05-25 08:23:43] [INFO ] SMT solver returned unknown. Retrying;
[2024-05-25 08:24:13] [INFO ] [Real]Absence check using 3483 positive and 1 generalized place invariants in 60042 ms returned unknown
Interrupted Random directed walk after 58776 steps, including 0 resets, run timeout after 30171 ms. (steps per millisecond=1 )
Interrupted Random walk after 33392 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 61102 steps, including 0 resets, run timeout after 30852 ms. (steps per millisecond=1 )
Interrupted Random walk after 34329 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Starting structural reductions in DEADLOCK mode, iteration 0 : 9153/9153 places, 25110/25110 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 2138 ms. Remains 9153 /9153 variables (removed 0) and now considering 25110/25110 (removed 0) transitions.
[2024-05-25 08:26:16] [INFO ] Invariant cache hit.
[2024-05-25 08:26:42] [INFO ] Implicit Places using invariants in 26026 ms returned []
Implicit Place search using SMT only with invariants took 26032 ms to find 0 implicit places.
Running 22680 sub problems to find dead transitions.
[2024-05-25 08:26:43] [INFO ] Invariant cache hit.
----------------------------------------------------------------------
GreatSPN-meddly tool, MCC 2023
----------------------------------------------------------------------

Running HypercubeGrid-PT-C5K3P3B15

IS_COLORED=
IS_NUPN=

LOADING PETRI NET FILE /home/mcc/execution/model.pnml (PNML) ...
PNML VERSION 2009, P/T NET.
COLOR CLASSES: 0
CONSTANTS: 0
PLACES: 9153
TRANSITIONS: 25110
COLOR VARS: 0
MEASURES: 0
LOADING TIME: [User 1.420s, Sys 0.110s]


SAVING FILE /home/mcc/execution/model (.net / .def) ...
EXPORT TIME: [User 0.138s, Sys 0.015s]


----------------------------------------------------------------------
GreatSPN/Meddly.
Copyright (C) 1987-2022, University of Torino, Italy.
website: https://github.com/greatspn/SOURCES

Based on MEDDLY version 0.16.0
Copyright (C) 2009, Iowa State University Research Foundation, Inc.
website: http://meddly.sourceforge.net

Process ID: 549
MODEL NAME: /home/mcc/execution/model
9153 places, 25110 transitions.

Creating all event NSFs..
Creating all event NSFs..
Creating all event NSFs..
Creating all event NSFs..

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
++ perl -pe 's/.*\.//g'
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -timeout 180 -rebuildPNML

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HypercubeGrid-PT-C5K3P3B15"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="greatspnxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool greatspnxred"
echo " Input is HypercubeGrid-PT-C5K3P3B15, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r210-smll-171649593900171"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/HypercubeGrid-PT-C5K3P3B15.tgz
mv HypercubeGrid-PT-C5K3P3B15 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;