Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r158-smll-171636266800400.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool itstools
Input is FamilyReunion-COL-L00020M0002C001P001G001, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r158-smll-171636266800400
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 652K
-rw-r--r-- 1 mcc users 7.6K Apr 11 20:25 CTLCardinality.txt
-rw-r--r-- 1 mcc users 82K Apr 11 20:25 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.2K Apr 11 20:18 CTLFireability.txt
-rw-r--r-- 1 mcc users 43K Apr 11 20:18 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.0K Apr 22 14:44 LTLCardinality.txt
-rw-r--r-- 1 mcc users 28K Apr 22 14:44 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K Apr 22 14:44 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 22 14:44 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K Apr 11 20:42 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 134K Apr 11 20:42 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 17K Apr 11 20:36 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 114K Apr 11 20:36 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K Apr 22 14:44 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K Apr 22 14:44 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 18 16:42 equiv_pt
-rw-r--r-- 1 mcc users 24 May 18 16:42 instance
-rw-r--r-- 1 mcc users 5 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 135K May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1716634350459

Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=StateSpace
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=FamilyReunion-COL-L00020M0002C001P001G001
BK_MEMORY_CONFINEMENT=16384
Not applying reductions.
Model is COL
StateSpace COL
Running Version 202405141337
[2024-05-25 10:52:32] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2024-05-25 10:52:32] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-25 10:52:32] [INFO ] Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
log4j:WARN No appenders could be found for logger (org.apache.axiom.locator.DefaultOMMetaFactoryLocator).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
[2024-05-25 10:52:32] [WARNING] Using fallBack plugin, rng conformance not checked
[2024-05-25 10:52:33] [INFO ] Load time of PNML (colored model parsed with PNMLFW) : 1256 ms
[2024-05-25 10:52:33] [INFO ] Detected 5 constant HL places corresponding to 11 PT places.
[2024-05-25 10:52:33] [INFO ] Imported 104 HL places and 66 HL transitions for a total of 3292 PT places and 2774.0 transition bindings in 48 ms.
[2024-05-25 10:52:33] [INFO ] Unfolded HLPN to a Petri net with 3292 places and 2753 transitions 7900 arcs in 102 ms.
[2024-05-25 10:52:33] [INFO ] Unfolded 0 HLPN properties in 0 ms.
Deduced a syphon composed of 21 places in 31 ms
Reduce places removed 32 places and 0 transitions.
Starting structural reductions in STATESPACE mode, iteration 0 : 3260/3260 places, 2753/2753 transitions.
[2024-05-25 10:52:34] [INFO ] Redundant transitions in 177 ms returned []
Running 2732 sub problems to find dead transitions.
// Phase 1: matrix 2753 rows 3260 cols
[2024-05-25 10:52:34] [INFO ] Computed 748 invariants in 298 ms
Error getting values : (error "ParserException while parsing response: (timeout
org.smtlib.IParser$ParserException: Unbalanced parentheses at end of input")
At refinement iteration 0 (INCLUDED_ONLY) 0/3163 variables, 647/647 constraints. Problems are: Problem set: 0 solved, 2732 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Real declared 3163/6013 variables, and 647 constraints, problems are : Problem set: 0 solved, 2732 unsolved in 30179 ms.
Refiners :[Positive P Invariants (semi-flows): 0/30 constraints, Generalized P Invariants (flows): 647/718 constraints, State Equation: 0/3260 constraints, PredecessorRefiner: 2732/2732 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 2732 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/3163 variables, 647/647 constraints. Problems are: Problem set: 0 solved, 2732 unsolved
Error getting values : (error "ParserException while parsing response: ((s0 1)
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(s1527 timeout
1) org.smtlib.IParser$ParserException: Unbalanced parentheses at end of input")
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 3163/6013 variables, and 647 constraints, problems are : Problem set: 0 solved, 2732 unsolved in 30065 ms.
Refiners :[Positive P Invariants (semi-flows): 0/30 constraints, Generalized P Invariants (flows): 647/718 constraints, State Equation: 0/3260 constraints, PredecessorRefiner: 0/2732 constraints, Known Traps: 0/0 constraints]
After SMT, in 62130ms problems are : Problem set: 0 solved, 2732 unsolved
Search for dead transitions found 0 dead transitions in 62235ms
Finished structural reductions in STATESPACE mode , in 1 iterations and 62636 ms. Remains : 3260/3260 places, 2753/2753 transitions.
Final net has 3260 places and 2753 transitions.
[2024-05-25 10:53:37] [INFO ] Flatten gal took : 376 ms
[2024-05-25 10:53:37] [INFO ] Applying decomposition
[2024-05-25 10:53:37] [INFO ] Flatten gal took : 220 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202405141337/bin/convert-linux64' '-i' '/tmp/graph5829987457722427493.txt' '-o' '/tmp/graph5829987457722427493.bin' '-w' '/tmp/graph5829987457722427493.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202405141337/bin/louvain-linux64' '/tmp/graph5829987457722427493.bin' '-l' '-1' '-v' '-w' '/tmp/graph5829987457722427493.weights' '-q' '0' '-e' '0.001'
[2024-05-25 10:53:38] [INFO ] Decomposing Gal with order
[2024-05-25 10:53:38] [INFO ] Rewriting arrays to variables to allow decomposition.
[2024-05-25 10:53:39] [INFO ] Removed a total of 855 redundant transitions.
[2024-05-25 10:53:39] [INFO ] Flatten gal took : 412 ms
[2024-05-25 10:53:39] [INFO ] Fuse similar labels procedure discarded/fused a total of 98 labels/synchronizations in 105 ms.
[2024-05-25 10:53:39] [INFO ] Time to serialize gal into /tmp/StateSpace13346480520138671772.gal : 84 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace13346480520138671772.gal' '-t' 'CGAL' '--stats'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...220
Detected timeout of ITS tools.
[2024-05-25 11:14:01] [INFO ] Applying decomposition
[2024-05-25 11:14:01] [INFO ] Flatten gal took : 148 ms
[2024-05-25 11:14:01] [INFO ] Decomposing Gal with order
[2024-05-25 11:14:02] [INFO ] Rewriting arrays to variables to allow decomposition.
[2024-05-25 11:14:02] [INFO ] Removed a total of 1292 redundant transitions.
[2024-05-25 11:14:02] [INFO ] Flatten gal took : 206 ms
[2024-05-25 11:14:02] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 10 ms.
[2024-05-25 11:14:02] [INFO ] Time to serialize gal into /tmp/StateSpace11902725260334657847.gal : 28 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace11902725260334657847.gal' '-t' 'CGAL' '--stats'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...220
ITS-tools command line returned an error code 137
[2024-05-25 11:25:26] [INFO ] Flatten gal took : 100 ms
[2024-05-25 11:25:26] [INFO ] Input system was already deterministic with 2753 transitions.
[2024-05-25 11:25:26] [INFO ] Transformed 3260 places.
[2024-05-25 11:25:26] [INFO ] Transformed 2753 transitions.
Running greatSPN : cd /home/mcc/execution;'/home/mcc/BenchKit/bin//../itstools/bin//..//greatspn//bin/pinvar' '/home/mcc/execution/gspn'
P-invariant computation with GreatSPN timed out. Skipping.
Running greatSPN : cd /home/mcc/execution;'/home/mcc/BenchKit/bin//../itstools/bin//..//greatspn//bin/RGMEDD2' '/home/mcc/execution/gspn' '-META' '-varord-only'
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2024-05-25 11:25:56] [INFO ] Time to serialize gal into /tmp/StateSpace13602507214551043790.gal : 17 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace13602507214551043790.gal' '-t' 'CGAL' '--stats' '--load-order' '/home/mcc/execution/model.ord' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202405141337/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...286
Successfully loaded order from file /home/mcc/execution/model.ord
ITS-tools command line returned an error code 137
Total runtime 2902530 ms.

BK_STOP 1716637254840

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StateSpace = StateSpace ]]
+ [[ -f modelMain.xml ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="FamilyReunion-COL-L00020M0002C001P001G001"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool itstools"
echo " Input is FamilyReunion-COL-L00020M0002C001P001G001, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r158-smll-171636266800400"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/FamilyReunion-COL-L00020M0002C001P001G001.tgz
mv FamilyReunion-COL-L00020M0002C001P001G001 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;