Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r132-smll-171624289400276.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
...................................................................................................................................
=====================================================================
Generated by BenchKit 2-5568
Executing tool gold2023
Input is DNAwalker-PT-10ringRL, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r132-smll-171624289400276
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 764K
-rw-r--r-- 1 mcc users 7.8K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 90K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.7K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 64K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.3K Apr 22 14:39 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Apr 22 14:39 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Apr 22 14:39 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 22 14:39 LTLFireability.xml
-rw-r--r-- 1 mcc users 20K Apr 13 13:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 248K Apr 13 13:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 13K Apr 13 13:43 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 118K Apr 13 13:43 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 22 14:39 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Apr 22 14:39 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 9 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 112K May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1716389103372

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=gold2023
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=DNAwalker-PT-10ringRL
Not applying reductions.
Model is PT
ReachabilityDeadlock PT
Running Version 202304061127
[2024-05-22 14:45:06] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2024-05-22 14:45:06] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-22 14:45:07] [INFO ] Load time of PNML (sax parser for PT used): 139 ms
[2024-05-22 14:45:07] [INFO ] Transformed 27 places.
[2024-05-22 14:45:07] [INFO ] Transformed 260 transitions.
[2024-05-22 14:45:07] [INFO ] Parsed PT model containing 27 places and 260 transitions and 760 arcs in 296 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 5 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 15 ms.18089KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 27/27 places, 260/260 transitions.
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Applied a total of 0 rules in 55 ms. Remains 27 /27 variables (removed 0) and now considering 260/260 (removed 0) transitions.
[2024-05-22 14:45:07] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
// Phase 1: matrix 259 rows 27 cols
[2024-05-22 14:45:07] [INFO ] Computed 0 invariants in 19 ms
[2024-05-22 14:45:07] [INFO ] Dead Transitions using invariants and state equation in 560 ms found 0 transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 675 ms. Remains : 27/27 places, 260/260 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 27/27 places, 260/260 transitions.
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Applied a total of 0 rules in 23 ms. Remains 27 /27 variables (removed 0) and now considering 260/260 (removed 0) transitions.
[2024-05-22 14:45:07] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:07] [INFO ] Invariant cache hit.
[2024-05-22 14:45:08] [INFO ] Implicit Places using invariants in 86 ms returned []
[2024-05-22 14:45:08] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:08] [INFO ] Invariant cache hit.
[2024-05-22 14:45:08] [INFO ] State equation strengthened by 72 read => feed constraints.
[2024-05-22 14:45:08] [INFO ] Implicit Places using invariants and state equation in 817 ms returned []
Implicit Place search using SMT with State Equation took 905 ms to find 0 implicit places.
[2024-05-22 14:45:08] [INFO ] Redundant transitions in 14 ms returned []
[2024-05-22 14:45:08] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:08] [INFO ] Invariant cache hit.
[2024-05-22 14:45:09] [INFO ] Dead Transitions using invariants and state equation in 195 ms found 0 transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 1150 ms. Remains : 27/27 places, 260/260 transitions.
Random walk for 1250000 steps, including 101174 resets, run took 5133 ms (no deadlock found). (steps per millisecond=243 )
Random directed walk for 1250026 steps, including 23024 resets, run took 4325 ms (no deadlock found). (steps per millisecond=289 )
[2024-05-22 14:45:18] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:18] [INFO ] Invariant cache hit.
[2024-05-22 14:45:18] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2024-05-22 14:45:18] [INFO ] [Real]Absence check using state equation in 96 ms returned sat
[2024-05-22 14:45:18] [INFO ] Solution in real domain found non-integer solution.
[2024-05-22 14:45:18] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2024-05-22 14:45:18] [INFO ] [Nat]Absence check using state equation in 90 ms returned sat
[2024-05-22 14:45:18] [INFO ] State equation strengthened by 72 read => feed constraints.
[2024-05-22 14:45:18] [INFO ] [Nat]Added 72 Read/Feed constraints in 32 ms returned sat
[2024-05-22 14:45:19] [INFO ] Computed and/alt/rep : 0/0/0 causal constraints (skipped 233 transitions) in 37 ms.
[2024-05-22 14:45:19] [INFO ] Added : 0 causal constraints over 0 iterations in 82 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 6 ms.
Parikh directed walk for 1000 steps, including 100 resets, run took 9 ms. (steps per millisecond=111 )
Random directed walk for 500021 steps, including 9182 resets, run took 1696 ms (no deadlock found). (steps per millisecond=294 )
Random walk for 500000 steps, including 40368 resets, run took 2227 ms (no deadlock found). (steps per millisecond=224 )
Random directed walk for 500000 steps, including 9256 resets, run took 1573 ms (no deadlock found). (steps per millisecond=317 )
Random walk for 500000 steps, including 40429 resets, run took 1993 ms (no deadlock found). (steps per millisecond=250 )
Starting structural reductions in DEADLOCK mode, iteration 0 : 27/27 places, 260/260 transitions.
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Computed a total of 27 stabilizing places and 258 stable transitions
Applied a total of 0 rules in 11 ms. Remains 27 /27 variables (removed 0) and now considering 260/260 (removed 0) transitions.
[2024-05-22 14:45:26] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:26] [INFO ] Invariant cache hit.
[2024-05-22 14:45:26] [INFO ] Implicit Places using invariants in 68 ms returned []
[2024-05-22 14:45:26] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:26] [INFO ] Invariant cache hit.
[2024-05-22 14:45:26] [INFO ] State equation strengthened by 72 read => feed constraints.
[2024-05-22 14:45:27] [INFO ] Implicit Places using invariants and state equation in 400 ms returned []
Implicit Place search using SMT with State Equation took 471 ms to find 0 implicit places.
[2024-05-22 14:45:27] [INFO ] Redundant transitions in 6 ms returned []
[2024-05-22 14:45:27] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:27] [INFO ] Invariant cache hit.
[2024-05-22 14:45:27] [INFO ] Dead Transitions using invariants and state equation in 282 ms found 0 transitions.
Finished structural reductions in DEADLOCK mode , in 1 iterations and 787 ms. Remains : 27/27 places, 260/260 transitions.
Random walk for 1250000 steps, including 100982 resets, run took 5237 ms (no deadlock found). (steps per millisecond=238 )
Random directed walk for 1250000 steps, including 23062 resets, run took 4483 ms (no deadlock found). (steps per millisecond=278 )
[2024-05-22 14:45:37] [INFO ] Flow matrix only has 259 transitions (discarded 1 similar events)
[2024-05-22 14:45:37] [INFO ] Invariant cache hit.
[2024-05-22 14:45:37] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2024-05-22 14:45:37] [INFO ] [Real]Absence check using state equation in 58 ms returned sat
[2024-05-22 14:45:37] [INFO ] Solution in real domain found non-integer solution.
[2024-05-22 14:45:37] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2024-05-22 14:45:37] [INFO ] [Nat]Absence check using state equation in 95 ms returned sat
[2024-05-22 14:45:37] [INFO ] State equation strengthened by 72 read => feed constraints.
[2024-05-22 14:45:37] [INFO ] [Nat]Added 72 Read/Feed constraints in 44 ms returned sat
[2024-05-22 14:45:37] [INFO ] Computed and/alt/rep : 0/0/0 causal constraints (skipped 233 transitions) in 30 ms.
[2024-05-22 14:45:37] [INFO ] Added : 0 causal constraints over 0 iterations in 62 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 3 ms.
Parikh directed walk for 1000 steps, including 99 resets, run took 5 ms. (steps per millisecond=200 )
Random directed walk for 500001 steps, including 9211 resets, run took 1862 ms (no deadlock found). (steps per millisecond=268 )
Random walk for 500000 steps, including 40385 resets, run took 2012 ms (no deadlock found). (steps per millisecond=248 )
Random directed walk for 500014 steps, including 9219 resets, run took 2044 ms (no deadlock found). (steps per millisecond=244 )
Random walk for 500000 steps, including 40405 resets, run took 2155 ms (no deadlock found). (steps per millisecond=232 )
[2024-05-22 14:45:45] [INFO ] Flatten gal took : 73 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin12503000999557657864
[2024-05-22 14:45:46] [INFO ] Applying decomposition
[2024-05-22 14:45:46] [INFO ] Computing symmetric may disable matrix : 260 transitions.
[2024-05-22 14:45:46] [INFO ] Computation of Complete disable matrix. took 10 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2024-05-22 14:45:46] [INFO ] Flatten gal took : 25 ms
[2024-05-22 14:45:46] [INFO ] Computing symmetric may enable matrix : 260 transitions.
[2024-05-22 14:45:46] [INFO ] Computation of Complete enable matrix. took 3 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2024-05-22 14:45:46] [INFO ] Computing Do-Not-Accords matrix : 260 transitions.
[2024-05-22 14:45:46] [INFO ] Computation of Completed DNA matrix. took 8 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2024-05-22 14:45:46] [INFO ] Built C files in 133ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin12503000999557657864
Running compilation step : cd /tmp/ltsmin12503000999557657864;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202304061127/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202304061127/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202304061127/bin/convert-linux64' '-i' '/tmp/graph1698354218298173062.txt' '-o' '/tmp/graph1698354218298173062.bin' '-w' '/tmp/graph1698354218298173062.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202304061127/bin/louvain-linux64' '/tmp/graph1698354218298173062.bin' '-l' '-1' '-v' '-w' '/tmp/graph1698354218298173062.weights' '-q' '0' '-e' '0.001'
[2024-05-22 14:45:46] [INFO ] Decomposing Gal with order
[2024-05-22 14:45:46] [INFO ] Rewriting arrays to variables to allow decomposition.
[2024-05-22 14:45:46] [INFO ] Removed a total of 452 redundant transitions.
[2024-05-22 14:45:46] [INFO ] Flatten gal took : 82 ms
[2024-05-22 14:45:46] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 4 ms.
[2024-05-22 14:45:46] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock7999284556166211071.gal : 4 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202304061127/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock7999284556166211071.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK'

its-ctl command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202304061127/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -...234
No direction supplied, using forward translation only.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,2.79507e+07,0.532438,14852,1128,9,22452,169,315,38388,14,165,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,0,0.663955,14852,1,0,22452,169,1112,38388,51,193,32266

System contains 0 deadlocks (shown below if less than --print-limit option) !
FORMULA ReachabilityDeadlock FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
[ 0 ]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.
Total runtime 40250 ms.

BK_STOP 1716389148318

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202304061127.jar
+ VERSION=202304061127
+ echo 'Running Version 202304061127'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="DNAwalker-PT-10ringRL"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="gold2023"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool gold2023"
echo " Input is DNAwalker-PT-10ringRL, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r132-smll-171624289400276"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/DNAwalker-PT-10ringRL.tgz
mv DNAwalker-PT-10ringRL execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;