Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r122-smll-171624283400231.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool greatspnxred
Input is DNAwalker-PT-01track12Block1, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r122-smll-171624283400231
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 588K
-rw-r--r-- 1 mcc users 7.6K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 89K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 7.2K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 73K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.6K Apr 22 14:38 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Apr 22 14:38 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Apr 22 14:38 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K Apr 22 14:38 LTLFireability.xml
-rw-r--r-- 1 mcc users 14K Apr 13 14:00 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 157K Apr 13 14:00 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 12K Apr 13 13:59 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 99K Apr 13 13:59 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Apr 22 14:38 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Apr 22 14:38 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 16 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 36K May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1716331802404

Invoking MCC driver with
BK_TOOL=greatspnxred
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=DNAwalker-PT-01track12Block1
BK_MEMORY_CONFINEMENT=16384
Applying reductions before tool greatspn
Invoking reducer
Running Version 202405141337
[2024-05-21 22:50:04] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -timeout, 180, -rebuildPNML]
[2024-05-21 22:50:04] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-21 22:50:04] [INFO ] Load time of PNML (sax parser for PT used): 73 ms
[2024-05-21 22:50:04] [INFO ] Transformed 13 places.
[2024-05-21 22:50:04] [INFO ] Transformed 82 transitions.
[2024-05-21 22:50:04] [INFO ] Parsed PT model containing 13 places and 82 transitions and 241 arcs in 221 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 7 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 5 ms.19011KB memory used
Starting structural reductions in DEADLOCK mode, iteration 0 : 13/13 places, 82/82 transitions.
Computed a total of 13 stabilizing places and 80 stable transitions
Computed a total of 13 stabilizing places and 80 stable transitions
Computed a total of 13 stabilizing places and 80 stable transitions
Applied a total of 0 rules in 26 ms. Remains 13 /13 variables (removed 0) and now considering 82/82 (removed 0) transitions.
Running 76 sub problems to find dead transitions.
[2024-05-21 22:50:04] [INFO ] Flow matrix only has 81 transitions (discarded 1 similar events)
// Phase 1: matrix 81 rows 13 cols
[2024-05-21 22:50:04] [INFO ] Computed 0 invariants in 5 ms
[2024-05-21 22:50:04] [INFO ] State equation strengthened by 10 read => feed constraints.
At refinement iteration 0 (INCLUDED_ONLY) 0/12 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 1 (OVERLAPS) 79/91 variables, 12/12 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/91 variables, 9/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/91 variables, 0/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 4 (OVERLAPS) 2/93 variables, 1/22 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/93 variables, 0/22 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 6 (OVERLAPS) 1/94 variables, 1/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 7 (INCLUDED_ONLY) 0/94 variables, 0/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 8 (OVERLAPS) 0/94 variables, 0/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
No progress, stopping.
After SMT solving in domain Real declared 94/94 variables, and 23 constraints, problems are : Problem set: 0 solved, 76 unsolved in 2115 ms.
Refiners :[State Equation: 13/13 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 76/76 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 76 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/12 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 1 (OVERLAPS) 79/91 variables, 12/12 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/91 variables, 9/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/91 variables, 76/97 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/91 variables, 0/97 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 5 (OVERLAPS) 2/93 variables, 1/98 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/93 variables, 0/98 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 7 (OVERLAPS) 1/94 variables, 1/99 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 8 (INCLUDED_ONLY) 0/94 variables, 0/99 constraints. Problems are: Problem set: 0 solved, 76 unsolved
Solver is answering 'unknown', stopping.
After SMT solving in domain Int declared 94/94 variables, and 99 constraints, problems are : Problem set: 0 solved, 76 unsolved in 20017 ms.
Refiners :[State Equation: 13/13 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 76/76 constraints, Known Traps: 0/0 constraints]
After SMT, in 22340ms problems are : Problem set: 0 solved, 76 unsolved
Search for dead transitions found 0 dead transitions in 22364ms
Finished structural reductions in DEADLOCK mode , in 1 iterations and 22555 ms. Remains : 13/13 places, 82/82 transitions.
Starting structural reductions in DEADLOCK mode, iteration 0 : 13/13 places, 82/82 transitions.
Computed a total of 13 stabilizing places and 80 stable transitions
Computed a total of 13 stabilizing places and 80 stable transitions
Computed a total of 13 stabilizing places and 80 stable transitions
Applied a total of 0 rules in 5 ms. Remains 13 /13 variables (removed 0) and now considering 82/82 (removed 0) transitions.
[2024-05-21 22:50:26] [INFO ] Flow matrix only has 81 transitions (discarded 1 similar events)
[2024-05-21 22:50:26] [INFO ] Invariant cache hit.
[2024-05-21 22:50:27] [INFO ] Implicit Places using invariants in 49 ms returned []
[2024-05-21 22:50:27] [INFO ] Flow matrix only has 81 transitions (discarded 1 similar events)
[2024-05-21 22:50:27] [INFO ] Invariant cache hit.
[2024-05-21 22:50:27] [INFO ] State equation strengthened by 10 read => feed constraints.
[2024-05-21 22:50:27] [INFO ] Implicit Places using invariants and state equation in 97 ms returned []
Implicit Place search using SMT with State Equation took 155 ms to find 0 implicit places.
[2024-05-21 22:50:27] [INFO ] Redundant transitions in 1 ms returned []
Running 76 sub problems to find dead transitions.
[2024-05-21 22:50:27] [INFO ] Flow matrix only has 81 transitions (discarded 1 similar events)
[2024-05-21 22:50:27] [INFO ] Invariant cache hit.
[2024-05-21 22:50:27] [INFO ] State equation strengthened by 10 read => feed constraints.
At refinement iteration 0 (INCLUDED_ONLY) 0/12 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 1 (OVERLAPS) 79/91 variables, 12/12 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/91 variables, 9/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/91 variables, 0/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 4 (OVERLAPS) 2/93 variables, 1/22 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/93 variables, 0/22 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 6 (OVERLAPS) 1/94 variables, 1/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 7 (INCLUDED_ONLY) 0/94 variables, 0/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 8 (OVERLAPS) 0/94 variables, 0/23 constraints. Problems are: Problem set: 0 solved, 76 unsolved
No progress, stopping.
After SMT solving in domain Real declared 94/94 variables, and 23 constraints, problems are : Problem set: 0 solved, 76 unsolved in 1969 ms.
Refiners :[State Equation: 13/13 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 76/76 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 76 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/12 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 1 (OVERLAPS) 79/91 variables, 12/12 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/91 variables, 9/21 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 3 (INCLUDED_ONLY) 0/91 variables, 76/97 constraints. Problems are: Problem set: 0 solved, 76 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/91 variables, 0/97 constraints. Problems are: Problem set: 0 solved, 76 unsolved
Problem TDEAD23 is UNSAT
Problem TDEAD56 is UNSAT
At refinement iteration 5 (OVERLAPS) 2/93 variables, 1/98 constraints. Problems are: Problem set: 2 solved, 74 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/93 variables, 0/98 constraints. Problems are: Problem set: 2 solved, 74 unsolved
At refinement iteration 7 (OVERLAPS) 1/94 variables, 1/99 constraints. Problems are: Problem set: 2 solved, 74 unsolved
At refinement iteration 8 (INCLUDED_ONLY) 0/94 variables, 0/99 constraints. Problems are: Problem set: 2 solved, 74 unsolved
At refinement iteration 9 (OVERLAPS) 0/94 variables, 0/99 constraints. Problems are: Problem set: 2 solved, 74 unsolved
No progress, stopping.
Problem TDEAD14 is UNSAT
After SMT solving in domain Int declared 94/94 variables, and 99 constraints, problems are : Problem set: 2 solved, 74 unsolved in 30010 ms.
Refiners :[State Equation: 13/13 constraints, ReadFeed: 10/10 constraints, PredecessorRefiner: 76/76 constraints, Known Traps: 0/0 constraints]
After SMT, in 32065ms problems are : Problem set: 2 solved, 74 unsolved
Search for dead transitions found 3 dead transitions in 32067ms
Found 3 dead transitions using SMT.
Drop transitions (Dead Transitions using SMT only with invariants) removed 3 transitions
Dead transitions reduction (with SMT) removed 3 transitions
Starting structural reductions in DEADLOCK mode, iteration 1 : 13/13 places, 79/82 transitions.
Computed a total of 13 stabilizing places and 77 stable transitions
Computed a total of 13 stabilizing places and 77 stable transitions
Computed a total of 13 stabilizing places and 77 stable transitions
Applied a total of 0 rules in 6 ms. Remains 13 /13 variables (removed 0) and now considering 79/79 (removed 0) transitions.
[2024-05-21 22:50:59] [INFO ] Redundant transitions in 2 ms returned []
Finished structural reductions in DEADLOCK mode , in 2 iterations and 32271 ms. Remains : 13/13 places, 79/82 transitions.
Finished random walk after 34 steps, including 3 resets, run found a deadlock after 2 ms. (steps per millisecond=17 )
FORMULA ReachabilityDeadlock TRUE TECHNIQUES TOPOLOGICAL STRUCTURAL_REDUCTION RANDOM_WALK
Total runtime 55152 ms.
ITS solved all properties within timeout

BK_STOP 1716331859350

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -timeout 180 -rebuildPNML

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="DNAwalker-PT-01track12Block1"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="greatspnxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool greatspnxred"
echo " Input is DNAwalker-PT-01track12Block1, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r122-smll-171624283400231"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/DNAwalker-PT-01track12Block1.tgz
mv DNAwalker-PT-01track12Block1 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;