Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r044-smll-171620180600033.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool gold2023
Input is Angiogenesis-PT-50, examination is StableMarking
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r044-smll-171620180600033
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 480K
-rw-r--r-- 1 mcc users 9.4K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 92K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.1K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 61K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.8K Apr 22 14:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Apr 22 14:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Apr 22 14:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 22 14:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 14K Apr 11 19:32 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 122K Apr 11 19:32 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Apr 11 19:32 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 40K Apr 11 19:32 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.5K May 19 07:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K May 19 15:23 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 3 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 33K May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME StableMarking

=== Now, execution of the tool begins

BK_START 1716271044643

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=gold2023
BK_EXAMINATION=StableMarking
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=Angiogenesis-PT-50
Not applying reductions.
Model is PT
StableMarking PT
Running Version 202304061127
[2024-05-21 05:57:27] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StableMarking, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2024-05-21 05:57:28] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-21 05:57:28] [INFO ] Load time of PNML (sax parser for PT used): 196 ms
[2024-05-21 05:57:28] [INFO ] Transformed 39 places.
[2024-05-21 05:57:28] [INFO ] Transformed 64 transitions.
[2024-05-21 05:57:28] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 343 ms.
Incomplete random walk after 10004 steps, including 2 resets, run finished after 184 ms. (steps per millisecond=54 ) properties (out of 39) seen :25
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 78 ms. (steps per millisecond=128 ) properties (out of 14) seen :11
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 46 ms. (steps per millisecond=217 ) properties (out of 3) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 42 ms. (steps per millisecond=238 ) properties (out of 3) seen :1
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 52 ms. (steps per millisecond=192 ) properties (out of 2) seen :0
[2024-05-21 05:57:28] [INFO ] Flatten gal took : 65 ms
Running SMT prover for 2 properties.
// Phase 1: matrix 64 rows 39 cols
[2024-05-21 05:57:28] [INFO ] Computed 8 invariants in 10 ms
[2024-05-21 05:57:28] [INFO ] Flatten gal took : 21 ms
[2024-05-21 05:57:28] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality9205666981435225138.gal : 27 ms
[2024-05-21 05:57:29] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality11373041550919195838.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202304061127/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality9205666981435225138.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality11373041550919195838.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202304061127/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality11373041550919195838.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,2 properties remain. new max is 64
SDD size :36 after 554
[2024-05-21 05:57:29] [INFO ] After 386ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2024-05-21 05:57:29] [INFO ] [Nat]Absence check using 8 positive place invariants in 25 ms returned sat
[2024-05-21 05:57:29] [INFO ] After 77ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2024-05-21 05:57:29] [INFO ] After 110ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
SDD proceeding with computation,2 properties remain. new max is 128
SDD size :554 after 4703
Minimization took 30 ms.
[2024-05-21 05:57:29] [INFO ] After 299ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
Parikh walk visited 0 properties in 2 ms.
Support contains 2 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 5 place count 36 transition count 62
Performed 10 Post agglomeration using F-continuation condition.Transition count delta: 10
Deduced a syphon composed of 10 places in 0 ms
Reduce places removed 10 places and 0 transitions.
Iterating global reduction 1 with 20 rules applied. Total rules applied 25 place count 26 transition count 52
Drop transitions removed 9 transitions
Reduce isomorphic transitions removed 9 transitions.
Graph (complete) has 78 edges and 26 vertex of which 25 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Iterating post reduction 1 with 10 rules applied. Total rules applied 35 place count 25 transition count 43
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 2 with 1 rules applied. Total rules applied 36 place count 25 transition count 42
Performed 4 Post agglomeration using F-continuation condition.Transition count delta: -3
Deduced a syphon composed of 4 places in 0 ms
Reduce places removed 4 places and 0 transitions.
Iterating global reduction 3 with 8 rules applied. Total rules applied 44 place count 21 transition count 45
Drop transitions removed 7 transitions
Reduce isomorphic transitions removed 7 transitions.
Iterating post reduction 3 with 7 rules applied. Total rules applied 51 place count 21 transition count 38
Drop transitions removed 5 transitions
Redundant transition composition rules discarded 5 transitions
Iterating global reduction 4 with 5 rules applied. Total rules applied 56 place count 21 transition count 33
Free-agglomeration rule (complex) applied 5 times.
Iterating global reduction 4 with 5 rules applied. Total rules applied 61 place count 21 transition count 28
Reduce places removed 5 places and 0 transitions.
Drop transitions removed 3 transitions
Reduce isomorphic transitions removed 3 transitions.
Iterating post reduction 4 with 8 rules applied. Total rules applied 69 place count 16 transition count 25
Applied a total of 69 rules in 60 ms. Remains 16 /39 variables (removed 23) and now considering 25/64 (removed 39) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 61 ms. Remains : 16/39 places, 25/64 transitions.
Finished random walk after 12069 steps, including 8 resets, run visited all 2 properties in 20 ms. (steps per millisecond=603 )
Parikh walk visited 0 properties in 0 ms.
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
Able to resolve query StableMarking after proving 39 properties.
FORMULA StableMarking FALSE TECHNIQUES RANDOM_WALK BESTFIRST_WALK TOPOLOGICAL
Total runtime 1734 ms.

BK_STOP 1716271051053

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StableMarking = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202304061127.jar
+ VERSION=202304061127
+ echo 'Running Version 202304061127'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="StableMarking"
export BK_TOOL="gold2023"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool gold2023"
echo " Input is Angiogenesis-PT-50, examination is StableMarking"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r044-smll-171620180600033"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "UpperBounds" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] || [ "StableMarking" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StableMarking" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StableMarking" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StableMarking.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StableMarking.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StableMarking.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StableMarking.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] ; then
echo "FORMULA_NAME StableMarking"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;