Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2024-input.r025-smll-171620165800038.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2024-input.qcow2 backing_fmt=qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5568
Executing tool greatspnxred
Input is Angiogenesis-PT-20, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r025-smll-171620165800038
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 488K
-rw-r--r-- 1 mcc users 8.4K May 14 13:22 CTLCardinality.txt
-rw-r--r-- 1 mcc users 87K May 14 13:22 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K May 14 13:22 CTLFireability.txt
-rw-r--r-- 1 mcc users 61K May 14 13:22 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 18 16:42 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 18 16:42 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.5K Apr 22 14:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 29K Apr 22 14:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Apr 22 14:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Apr 22 14:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.4K Apr 11 19:24 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 80K Apr 11 19:24 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.7K Apr 11 19:23 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 80K Apr 11 19:23 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Apr 22 14:27 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Apr 22 14:27 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 18 16:42 equiv_col
-rw-r--r-- 1 mcc users 3 May 18 16:42 instance
-rw-r--r-- 1 mcc users 6 May 18 16:42 iscolored
-rw-r--r-- 1 mcc users 33K May 18 16:42 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-00
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-01
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-02
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-03
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-04
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-05
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-06
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-07
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-08
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-09
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-10
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-11
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-12
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-13
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-14
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-2024-15

=== Now, execution of the tool begins

BK_START 1716253921135

Invoking MCC driver with
BK_TOOL=greatspnxred
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-20
BK_MEMORY_CONFINEMENT=16384
Applying reductions before tool greatspn
Invoking reducer
Running Version 202405141337
[2024-05-21 01:12:02] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -timeout, 360, -rebuildPNML]
[2024-05-21 01:12:02] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2024-05-21 01:12:03] [INFO ] Load time of PNML (sax parser for PT used): 80 ms
[2024-05-21 01:12:03] [INFO ] Transformed 39 places.
[2024-05-21 01:12:03] [INFO ] Transformed 64 transitions.
[2024-05-21 01:12:03] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 355 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 112 ms.
Working with output stream class java.io.PrintStream
RANDOM walk for 40018 steps (9 resets) in 699 ms. (57 steps per ms) remains 5/16 properties
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-14 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-09 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-07 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-05 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-03 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-00 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
BEST_FIRST walk for 40004 steps (8 resets) in 360 ms. (110 steps per ms) remains 5/5 properties
BEST_FIRST walk for 40004 steps (8 resets) in 129 ms. (307 steps per ms) remains 3/5 properties
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-13 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-10 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
BEST_FIRST walk for 40003 steps (8 resets) in 98 ms. (404 steps per ms) remains 3/3 properties
BEST_FIRST walk for 40004 steps (8 resets) in 287 ms. (138 steps per ms) remains 3/3 properties
// Phase 1: matrix 64 rows 39 cols
[2024-05-21 01:12:04] [INFO ] Computed 8 invariants in 9 ms
Problem Angiogenesis-PT-20-ReachabilityCardinality-2024-11 is UNSAT
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-11 FALSE TECHNIQUES SMT_REFINEMENT
All remaining problems are real, not stopping.
At refinement iteration 0 (INCLUDED_ONLY) 0/25 variables, 0/0 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 1 (OVERLAPS) 13/38 variables, 7/7 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/38 variables, 0/7 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 3 (OVERLAPS) 1/39 variables, 1/8 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/39 variables, 0/8 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 5 (OVERLAPS) 64/103 variables, 39/47 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/103 variables, 0/47 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 7 (OVERLAPS) 0/103 variables, 0/47 constraints. Problems are: Problem set: 1 solved, 2 unsolved
No progress, stopping.
After SMT solving in domain Real declared 103/103 variables, and 47 constraints, problems are : Problem set: 1 solved, 2 unsolved in 367 ms.
Refiners :[Positive P Invariants (semi-flows): 8/8 constraints, State Equation: 39/39 constraints, PredecessorRefiner: 3/3 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 1 solved, 2 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/23 variables, 0/0 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 1 (OVERLAPS) 15/38 variables, 7/7 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/38 variables, 0/7 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 3 (OVERLAPS) 1/39 variables, 1/8 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/39 variables, 0/8 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 5 (OVERLAPS) 64/103 variables, 39/47 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 6 (INCLUDED_ONLY) 0/103 variables, 2/49 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 7 (INCLUDED_ONLY) 0/103 variables, 0/49 constraints. Problems are: Problem set: 1 solved, 2 unsolved
At refinement iteration 8 (OVERLAPS) 0/103 variables, 0/49 constraints. Problems are: Problem set: 1 solved, 2 unsolved
No progress, stopping.
After SMT solving in domain Int declared 103/103 variables, and 49 constraints, problems are : Problem set: 1 solved, 2 unsolved in 236 ms.
Refiners :[Positive P Invariants (semi-flows): 8/8 constraints, State Equation: 39/39 constraints, PredecessorRefiner: 2/3 constraints, Known Traps: 0/0 constraints]
After SMT, in 698ms problems are : Problem set: 1 solved, 2 unsolved
Parikh walk visited 0 properties in 650 ms.
Support contains 23 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 39 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 37 transition count 63
Drop transitions (Empty/Sink Transition effects.) removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 4 place count 37 transition count 62
Performed 2 Post agglomeration using F-continuation condition.Transition count delta: 2
Deduced a syphon composed of 2 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 1 with 4 rules applied. Total rules applied 8 place count 35 transition count 60
Drop transitions (Empty/Sink Transition effects.) removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 1 with 1 rules applied. Total rules applied 9 place count 35 transition count 59
Drop transitions (Redundant composition of simpler transitions.) removed 2 transitions
Redundant transition composition rules discarded 2 transitions
Iterating global reduction 2 with 2 rules applied. Total rules applied 11 place count 35 transition count 57
Free-agglomeration rule applied 1 times.
Iterating global reduction 2 with 1 rules applied. Total rules applied 12 place count 35 transition count 56
Reduce places removed 1 places and 0 transitions.
Drop transitions (Empty/Sink Transition effects.) removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 2 with 2 rules applied. Total rules applied 14 place count 34 transition count 55
Free-agglomeration rule (complex) applied 2 times.
Iterating global reduction 3 with 2 rules applied. Total rules applied 16 place count 34 transition count 53
Reduce places removed 2 places and 0 transitions.
Drop transitions (Empty/Sink Transition effects.) removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 3 with 3 rules applied. Total rules applied 19 place count 32 transition count 52
Applied a total of 19 rules in 59 ms. Remains 32 /39 variables (removed 7) and now considering 52/64 (removed 12) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 90 ms. Remains : 32/39 places, 52/64 transitions.
RANDOM walk for 40019 steps (8 resets) in 236 ms. (168 steps per ms) remains 1/2 properties
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
BEST_FIRST walk for 40004 steps (8 resets) in 212 ms. (187 steps per ms) remains 1/1 properties
// Phase 1: matrix 52 rows 32 cols
[2024-05-21 01:12:05] [INFO ] Computed 7 invariants in 2 ms
At refinement iteration 0 (INCLUDED_ONLY) 0/9 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 1 (OVERLAPS) 23/32 variables, 7/7 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/32 variables, 0/7 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 3 (OVERLAPS) 52/84 variables, 32/39 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/84 variables, 0/39 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 5 (OVERLAPS) 0/84 variables, 0/39 constraints. Problems are: Problem set: 0 solved, 1 unsolved
No progress, stopping.
After SMT solving in domain Real declared 84/84 variables, and 39 constraints, problems are : Problem set: 0 solved, 1 unsolved in 112 ms.
Refiners :[Positive P Invariants (semi-flows): 7/7 constraints, State Equation: 32/32 constraints, PredecessorRefiner: 1/1 constraints, Known Traps: 0/0 constraints]
Escalating to Integer solving :Problem set: 0 solved, 1 unsolved
At refinement iteration 0 (INCLUDED_ONLY) 0/9 variables, 0/0 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 1 (OVERLAPS) 23/32 variables, 7/7 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 2 (INCLUDED_ONLY) 0/32 variables, 0/7 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 3 (OVERLAPS) 52/84 variables, 32/39 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 4 (INCLUDED_ONLY) 0/84 variables, 1/40 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 5 (INCLUDED_ONLY) 0/84 variables, 0/40 constraints. Problems are: Problem set: 0 solved, 1 unsolved
At refinement iteration 6 (OVERLAPS) 0/84 variables, 0/40 constraints. Problems are: Problem set: 0 solved, 1 unsolved
No progress, stopping.
After SMT solving in domain Int declared 84/84 variables, and 40 constraints, problems are : Problem set: 0 solved, 1 unsolved in 87 ms.
Refiners :[Positive P Invariants (semi-flows): 7/7 constraints, State Equation: 32/32 constraints, PredecessorRefiner: 1/1 constraints, Known Traps: 0/0 constraints]
After SMT, in 215ms problems are : Problem set: 0 solved, 1 unsolved
Finished Parikh walk after 6075 steps, including 66 resets, run visited all 1 properties in 10 ms. (steps per millisecond=607 )
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2024-02 TRUE TECHNIQUES PARIKH_WALK
Parikh walk visited 1 properties in 16 ms.
All properties solved without resorting to model-checking.
Total runtime 2977 ms.
ITS solved all properties within timeout

BK_STOP 1716253925959

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202405141337.jar
+ VERSION=202405141337
+ echo 'Running Version 202405141337'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -timeout 360 -rebuildPNML

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="greatspnxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5568"
echo " Executing tool greatspnxred"
echo " Input is Angiogenesis-PT-20, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r025-smll-171620165800038"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;