Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r453-smll-167912645600550.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is StigmergyCommit-PT-11b, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r453-smll-167912645600550
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 1.4G
-rw-r--r-- 1 mcc users 6.2K Feb 26 12:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 59K Feb 26 12:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.9K Feb 26 12:19 CTLFireability.txt
-rw-r--r-- 1 mcc users 40K Feb 26 12:19 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Feb 25 17:13 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 17:13 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Feb 25 17:13 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 17:13 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K Feb 26 13:36 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 118K Feb 26 13:36 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.7K Feb 26 13:12 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 13:12 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 17:13 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 17:13 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 equiv_col
-rw-r--r-- 1 mcc users 4 Mar 5 18:23 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 iscolored
-rw-r--r-- 1 mcc users 1.4G Mar 5 18:23 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-00
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-01
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-02
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-03
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-04
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-05
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-06
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-07
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-08
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-09
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-10
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-11
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-12
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-13
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-14
FORMULA_NAME StigmergyCommit-PT-11b-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1679405880958

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=StigmergyCommit-PT-11b
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-21 13:38:14] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-21 13:38:14] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-21 13:39:07] [INFO ] Load time of PNML (sax parser for PT used): 52827 ms
[2023-03-21 13:39:08] [INFO ] Transformed 3655 places.
[2023-03-21 13:39:13] [INFO ] Transformed 1070836 transitions.
[2023-03-21 13:39:13] [INFO ] Found NUPN structural information;
[2023-03-21 13:39:13] [INFO ] Parsed PT model containing 3655 places and 1070836 transitions and 25615632 arcs in 58756 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 31 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10000 steps, including 46 resets, run finished after 11005 ms. (steps per millisecond=0 ) properties (out of 16) seen :1
FORMULA StigmergyCommit-PT-11b-ReachabilityCardinality-03 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 96 ms. (steps per millisecond=10 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 235 ms. (steps per millisecond=4 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 94 ms. (steps per millisecond=10 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 89 ms. (steps per millisecond=11 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 92 ms. (steps per millisecond=10 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1000 steps, including 2 resets, run finished after 252 ms. (steps per millisecond=3 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 90 ms. (steps per millisecond=11 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 83 ms. (steps per millisecond=12 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 232 ms. (steps per millisecond=4 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 101 ms. (steps per millisecond=9 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 89 ms. (steps per millisecond=11 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 83 ms. (steps per millisecond=12 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 230 ms. (steps per millisecond=4 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 86 ms. (steps per millisecond=11 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 85 ms. (steps per millisecond=11 ) properties (out of 15) seen :0
Interrupted probabilistic random walk after 7728 steps, run timeout after 36028 ms. (steps per millisecond=0 ) properties seen :{5=1}
Probabilistic random walk after 7728 steps, saw 6568 distinct states, run finished after 36029 ms. (steps per millisecond=0 ) properties seen :1
FORMULA StigmergyCommit-PT-11b-ReachabilityCardinality-06 TRUE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
Running SMT prover for 14 properties.
// Phase 1: matrix 1070836 rows 3655 cols
[2023-03-21 13:42:37] [WARNING] Invariant computation timed out after 120 seconds.
[2023-03-21 13:42:48] [INFO ] After 11235ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:14
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:629)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMTIncremental(DeadlockTester.java:350)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMT(DeadlockTester.java:223)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.applyReductions(ReachabilitySolver.java:95)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:902)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 13:43:27] [WARNING] SMT solver failed with error :SMT solver raised an error when submitting script.... while checking expressions.
[2023-03-21 13:43:27] [INFO ] After 38542ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :0 real:14
Fused 14 Parikh solutions to 1 different solutions.
Parikh walk visited 0 properties in 3 ms.
Support contains 209 out of 3655 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 3655/3655 places, 1070836/1070836 transitions.
Graph (trivial) has 3201 edges and 3655 vertex of which 204 / 3655 are part of one of the 31 SCC in 10938 ms
Free SCC test removed 173 places
Drop transitions removed 221 transitions
Reduce isomorphic transitions removed 221 transitions.
Graph (complete) has 7060 edges and 3482 vertex of which 3461 are kept as prefixes of interest. Removing 21 places using SCC suffix rule.9322 ms
Discarding 21 places :
Also discarding 10 output transitions
Drop transitions removed 10 transitions
Drop transitions removed 10 transitions
Reduce isomorphic transitions removed 10 transitions.
Drop transitions removed 2291 transitions
Trivial Post-agglo rules discarded 2291 transitions
Performed 2291 trivial Post agglomeration. Transition count delta: 2291
Iterating post reduction 0 with 2301 rules applied. Total rules applied 2303 place count 3461 transition count 1068304
[2023-03-21 13:47:13] [INFO ] Computed 13 place invariants in 396839 ms
Reduce places removed 2291 places and 0 transitions.
Ensure Unique test removed 23 transitions
Reduce isomorphic transitions removed 23 transitions.
Drop transitions removed 20 transitions
Trivial Post-agglo rules discarded 20 transitions
Performed 20 trivial Post agglomeration. Transition count delta: 20
Iterating post reduction 1 with 2334 rules applied. Total rules applied 4637 place count 1170 transition count 1068261
Reduce places removed 20 places and 0 transitions.
Performed 167 Post agglomeration using F-continuation condition.Transition count delta: 167
Iterating post reduction 2 with 187 rules applied. Total rules applied 4824 place count 1150 transition count 1068094
Reduce places removed 167 places and 0 transitions.
Ensure Unique test removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Iterating post reduction 3 with 169 rules applied. Total rules applied 4993 place count 983 transition count 1068092
[2023-03-21 13:48:39] [INFO ] Flatten gal took : 536418 ms
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 4 with 1 rules applied. Total rules applied 4994 place count 982 transition count 1068092
Performed 142 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 5 with 142 Pre rules applied. Total rules applied 4994 place count 982 transition count 1067950
Deduced a syphon composed of 142 places in 3001 ms
Reduce places removed 142 places and 0 transitions.
Iterating global reduction 5 with 284 rules applied. Total rules applied 5278 place count 840 transition count 1067950
Discarding 107 places :
Symmetric choice reduction at 5 with 107 rule applications. Total rules 5385 place count 733 transition count 1067843
Iterating global reduction 5 with 107 rules applied. Total rules applied 5492 place count 733 transition count 1067843
Ensure Unique test removed 4 transitions
Reduce isomorphic transitions removed 4 transitions.
Drop transitions removed 2 transitions
Trivial Post-agglo rules discarded 2 transitions
Performed 2 trivial Post agglomeration. Transition count delta: 2
Iterating post reduction 5 with 6 rules applied. Total rules applied 5498 place count 733 transition count 1067837
Reduce places removed 2 places and 0 transitions.
Iterating post reduction 6 with 2 rules applied. Total rules applied 5500 place count 731 transition count 1067837
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 7 with 1 Pre rules applied. Total rules applied 5500 place count 731 transition count 1067836
Deduced a syphon composed of 1 places in 2767 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 7 with 2 rules applied. Total rules applied 5502 place count 730 transition count 1067836
[2023-03-21 13:53:25] [INFO ] Flatten gal took : 285718 ms
[2023-03-21 13:53:59] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality14498133691173449408.gal : 33240 ms
[2023-03-21 13:53:59] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality14893404604841655565.prop : 3 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality14498133691173449408.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality14893404604841655565.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330

BK_STOP 1679406889972

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="StigmergyCommit-PT-11b"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is StigmergyCommit-PT-11b, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r453-smll-167912645600550"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/StigmergyCommit-PT-11b.tgz
mv StigmergyCommit-PT-11b execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;