Execution Chart

Sorry, for this execution, no execution chart could be reported.

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r453-smll-167912645600549.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is StigmergyCommit-PT-11b, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r453-smll-167912645600549
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 1.4G
-rw-r--r-- 1 mcc users 6.2K Feb 26 12:47 CTLCardinality.txt
-rw-r--r-- 1 mcc users 59K Feb 26 12:47 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.9K Feb 26 12:19 CTLFireability.txt
-rw-r--r-- 1 mcc users 40K Feb 26 12:19 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Feb 25 17:13 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 17:13 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Feb 25 17:13 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 17:13 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K Feb 26 13:36 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 118K Feb 26 13:36 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.7K Feb 26 13:12 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 13:12 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 17:13 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 17:13 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 equiv_col
-rw-r--r-- 1 mcc users 4 Mar 5 18:23 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 iscolored
-rw-r--r-- 1 mcc users 1.4G Mar 5 18:23 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-00
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-01
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-02
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-03
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-04
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-05
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-06
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-07
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-08
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-09
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-10
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-11
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-12
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-13
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-14
FORMULA_NAME StigmergyCommit-PT-11b-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1679405568486

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=UpperBounds
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=StigmergyCommit-PT-11b
Not applying reductions.
Model is PT
UpperBounds PT
Running Version 202303021504
[2023-03-21 13:32:55] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-21 13:32:55] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-21 13:33:47] [INFO ] Load time of PNML (sax parser for PT used): 52192 ms
[2023-03-21 13:33:49] [INFO ] Transformed 3655 places.
[2023-03-21 13:33:53] [INFO ] Transformed 1070836 transitions.
[2023-03-21 13:33:53] [INFO ] Found NUPN structural information;
[2023-03-21 13:33:53] [INFO ] Parsed PT model containing 3655 places and 1070836 transitions and 25615632 arcs in 58515 ms.
Parsed 16 properties from file /home/mcc/execution/UpperBounds.xml in 11 ms.
// Phase 1: matrix 1070836 rows 3655 cols
[2023-03-21 13:35:39] [INFO ] Computed 13 place invariants in 92095 ms
Incomplete random walk after 10000 steps, including 45 resets, run finished after 7743 ms. (steps per millisecond=1 ) properties (out of 16) seen :4
FORMULA StigmergyCommit-PT-11b-UpperBounds-10 1 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA StigmergyCommit-PT-11b-UpperBounds-06 1 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA StigmergyCommit-PT-11b-UpperBounds-04 1 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA StigmergyCommit-PT-11b-UpperBounds-00 1 TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 747 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10000 steps, including 4 resets, run finished after 750 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 715 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 751 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 4 resets, run finished after 774 ms. (steps per millisecond=12 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 787 ms. (steps per millisecond=12 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 728 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 842 ms. (steps per millisecond=11 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 4 resets, run finished after 669 ms. (steps per millisecond=14 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 754 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 4 resets, run finished after 767 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 735 ms. (steps per millisecond=13 ) properties (out of 12) seen :0
[2023-03-21 13:36:00] [INFO ] Invariant cache hit.
[2023-03-21 13:36:02] [INFO ] [Real]Absence check using 13 positive place invariants in 126 ms returned sat
[2023-03-21 13:36:02] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2023-03-21 13:36:05] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Broken pipe")... while checking expression at index 0
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Broken pipe")...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:899)
at fr.lip6.move.gal.structural.smt.DeadlockTester.findStructuralMaxWithSMT(DeadlockTester.java:2618)
at fr.lip6.move.gal.application.solver.UpperBoundsSolver.applyReductions(UpperBoundsSolver.java:186)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:714)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 13:36:06] [INFO ] [Real]Absence check using 13 positive place invariants in 119 ms returned sat
[2023-03-21 13:36:06] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2023-03-21 13:36:13] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed... while checking expression at index 1
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:899)
at fr.lip6.move.gal.structural.smt.DeadlockTester.findStructuralMaxWithSMT(DeadlockTester.java:2618)
at fr.lip6.move.gal.application.solver.UpperBoundsSolver.applyReductions(UpperBoundsSolver.java:186)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:714)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 13:36:14] [INFO ] [Real]Absence check using 13 positive place invariants in 121 ms returned sat
[2023-03-21 13:36:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2023-03-21 13:36:27] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed... while checking expression at index 2
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:899)
at fr.lip6.move.gal.structural.smt.DeadlockTester.findStructuralMaxWithSMT(DeadlockTester.java:2618)
at fr.lip6.move.gal.application.solver.UpperBoundsSolver.applyReductions(UpperBoundsSolver.java:186)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:714)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 13:36:35] [WARNING] SMT solver failed with error :java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Failed to assert expression: java.io.IOException: Stream close... while checking expression at index 3
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Failed to assert expression: java.io.IOException: Stream close...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:874)
at fr.lip6.move.gal.structural.smt.DeadlockTester.findStructuralMaxWithSMT(DeadlockTester.java:2618)
at fr.lip6.move.gal.application.solver.UpperBoundsSolver.applyReductions(UpperBoundsSolver.java:186)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:714)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 13:36:38] [INFO ] [Real]Absence check using 13 positive place invariants in 154 ms returned sat
[2023-03-21 13:36:38] [INFO ] [Real]Adding state equation constraints to refine reachable states.

BK_STOP 1679405862911

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="StigmergyCommit-PT-11b"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is StigmergyCommit-PT-11b, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r453-smll-167912645600549"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/StigmergyCommit-PT-11b.tgz
mv StigmergyCommit-PT-11b execution
cd execution
if [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "UpperBounds" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] || [ "UpperBounds" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] ; then
echo "FORMULA_NAME UpperBounds"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;