Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r384-smll-167891833700151.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
..............................................................................................................................................................
=====================================================================
Generated by BenchKit 2-5348
Executing tool gold2022
Input is SafeBus-COL-50, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r384-smll-167891833700151
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 440K
-rw-r--r-- 1 mcc users 5.5K Feb 26 01:29 CTLCardinality.txt
-rw-r--r-- 1 mcc users 49K Feb 26 01:29 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.2K Feb 26 01:29 CTLFireability.txt
-rw-r--r-- 1 mcc users 43K Feb 26 01:29 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:41 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.8K Feb 25 16:49 LTLCardinality.txt
-rw-r--r-- 1 mcc users 28K Feb 25 16:49 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 16:49 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 16:49 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K Feb 26 01:29 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 133K Feb 26 01:29 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 5.5K Feb 26 01:29 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 37K Feb 26 01:29 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Feb 25 16:49 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K Feb 25 16:49 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 Mar 5 18:23 equiv_pt
-rw-r--r-- 1 mcc users 3 Mar 5 18:23 instance
-rw-r--r-- 1 mcc users 5 Mar 5 18:23 iscolored
-rw-r--r-- 1 mcc users 43K Mar 5 18:23 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1679134376692

Running Version 202205111006
[2023-03-18 10:12:59] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2023-03-18 10:12:59] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-18 10:12:59] [INFO ] Detected file is not PT type :http://www.pnml.org/version-2009/grammar/symmetricnet
log4j:WARN No appenders could be found for logger (org.apache.axiom.locator.DefaultOMMetaFactoryLocator).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
[2023-03-18 10:13:00] [WARNING] Using fallBack plugin, rng conformance not checked
[2023-03-18 10:13:01] [INFO ] Load time of PNML (colored model parsed with PNMLFW) : 1560 ms
[2023-03-18 10:13:01] [INFO ] Detected 1 constant HL places corresponding to 50 PT places.
[2023-03-18 10:13:01] [INFO ] Imported 20 HL places and 14 HL transitions for a total of 5606 PT places and 6520101.0 transition bindings in 53 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 4 ms.
Working with output stream class java.io.PrintStream
[2023-03-18 10:13:01] [INFO ] Built PT skeleton of HLPN with 20 places and 14 transitions 68 arcs in 12 ms.
[2023-03-18 10:13:01] [INFO ] Skeletonized 1 HLPN properties in 0 ms.
Reduce places removed 3 places and 0 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Prefix of Interest using HLPN skeleton for deadlock discarded 0 places and 0 transitions.
Domain [It(50), It(50)] of place AMC breaks symmetries in sort It
[2023-03-18 10:13:02] [INFO ] Unfolded HLPN to a Petri net with 5606 places and 140251 transitions 1078454 arcs in 1678 ms.
[2023-03-18 10:13:02] [INFO ] Unfolded 1 HLPN properties in 0 ms.
Deduced a syphon composed of 50 places in 181 ms
Reduce places removed 100 places and 100 transitions.
Built sparse matrix representations for Structural reductions in 44 ms.336106KB memory used
Starting structural reductions in DEADLOCKS mode, iteration 0 : 5506/5506 places, 140151/140151 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 45627 ms. Remains 5506 /5506 variables (removed 0) and now considering 140151/140151 (removed 0) transitions.
Finished structural reductions, in 1 iterations. Remains : 5506/5506 places, 140151/140151 transitions.
Starting structural reductions in DEADLOCKS mode, iteration 0 : 5506/5506 places, 140151/140151 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 44943 ms. Remains 5506 /5506 variables (removed 0) and now considering 140151/140151 (removed 0) transitions.
[2023-03-18 10:14:34] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:14:36] [INFO ] Computed 205 place invariants in 2081 ms
[2023-03-18 10:14:37] [INFO ] Implicit Places using invariants in 3768 ms returned []
Implicit Place search using SMT only with invariants took 3811 ms to find 0 implicit places.
[2023-03-18 10:14:38] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:14:39] [INFO ] Computed 205 place invariants in 1756 ms
[2023-03-18 10:14:40] [INFO ] Dead Transitions using invariants and state equation in 2914 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 5506/5506 places, 140151/140151 transitions.
Interrupted Random walk after 39358 steps, including 0 resets, run timeout after 30006 ms. (steps per millisecond=1 )
[2023-03-18 10:15:11] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:15:12] [INFO ] Computed 205 place invariants in 1777 ms
[2023-03-18 10:17:55] [INFO ] [Real]Absence check using 101 positive place invariants in 1985 ms returned sat
[2023-03-18 10:18:03] [INFO ] SMT solver returned unknown. Retrying;
[2023-03-18 10:18:06] [INFO ] [Real]Absence check using 101 positive and 104 generalized place invariants in 10577 ms returned unknown
Interrupted Random directed walk after 85664 steps, including 0 resets, run timeout after 30002 ms. (steps per millisecond=2 )
Interrupted Random walk after 41531 steps, including 0 resets, run timeout after 30004 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 90417 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=3 )
Interrupted Random walk after 41062 steps, including 0 resets, run timeout after 30005 ms. (steps per millisecond=1 )
Starting structural reductions in DEADLOCKS mode, iteration 0 : 5506/5506 places, 140151/140151 transitions.
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Computed a total of 0 stabilizing places and 0 stable transitions
Applied a total of 0 rules in 45020 ms. Remains 5506 /5506 variables (removed 0) and now considering 140151/140151 (removed 0) transitions.
[2023-03-18 10:20:51] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:20:53] [INFO ] Computed 205 place invariants in 1540 ms
[2023-03-18 10:20:54] [INFO ] Implicit Places using invariants in 2601 ms returned []
Implicit Place search using SMT only with invariants took 2602 ms to find 0 implicit places.
[2023-03-18 10:20:54] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:20:55] [INFO ] Computed 205 place invariants in 1604 ms
[2023-03-18 10:20:56] [INFO ] Dead Transitions using invariants and state equation in 2597 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 5506/5506 places, 140151/140151 transitions.
Interrupted Random walk after 40088 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
[2023-03-18 10:21:26] [INFO ] Flow matrix only has 15202 transitions (discarded 124949 similar events)
// Phase 1: matrix 15202 rows 5506 cols
[2023-03-18 10:21:28] [INFO ] Computed 205 place invariants in 1524 ms
[2023-03-18 10:24:05] [INFO ] [Real]Absence check using 101 positive place invariants in 1880 ms returned sat
[2023-03-18 10:24:12] [INFO ] SMT solver returned unknown. Retrying;
[2023-03-18 10:24:15] [INFO ] [Real]Absence check using 101 positive and 104 generalized place invariants in 10020 ms returned unknown
Interrupted Random directed walk after 95373 steps, including 0 resets, run timeout after 30004 ms. (steps per millisecond=3 )
Interrupted Random walk after 42231 steps, including 0 resets, run timeout after 30001 ms. (steps per millisecond=1 )
Interrupted Random directed walk after 93699 steps, including 0 resets, run timeout after 30003 ms. (steps per millisecond=3 )
Interrupted Random walk after 42892 steps, including 0 resets, run timeout after 30006 ms. (steps per millisecond=1 )
[2023-03-18 10:26:24] [INFO ] Flatten gal took : 8364 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin16671958234131964344
[2023-03-18 10:26:30] [INFO ] Too many transitions (140151) to apply POR reductions. Disabling POR matrices.
[2023-03-18 10:26:32] [INFO ] Built C files in 2555ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin16671958234131964344
Running compilation step : cd /tmp/ltsmin16671958234131964344;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
[2023-03-18 10:26:35] [INFO ] Applying decomposition
[2023-03-18 10:26:44] [INFO ] Flatten gal took : 8465 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/convert-linux64' '-i' '/tmp/graph6903177302870715567.txt' '-o' '/tmp/graph6903177302870715567.bin' '-w' '/tmp/graph6903177302870715567.weights'
Built communities with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/louvain-linux64' '/tmp/graph6903177302870715567.bin' '-l' '-1' '-v' '-w' '/tmp/graph6903177302870715567.weights' '-q' '0' '-e' '0.001'
[2023-03-18 10:26:58] [INFO ] Decomposing Gal with order
[2023-03-18 10:26:58] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-18 10:28:10] [INFO ] Removed a total of 509367 redundant transitions.
[2023-03-18 10:28:16] [INFO ] Flatten gal took : 69541 ms
[2023-03-18 10:29:26] [INFO ] Fuse similar labels procedure discarded/fused a total of 16179 labels/synchronizations in 60912 ms.
[2023-03-18 10:29:27] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock5207832120658857919.gal : 908 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock5207832120658857919.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK'

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/R...225
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running cd /tmp/ltsmin16671958234131964344;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c' killed by timeout after 360 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running cd /tmp/ltsmin16671958234131964344;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c' killed by timeout after 360 SECONDS
at fr.lip6.move.gal.application.runner.ltsmin.LTSminRunner$1.run(LTSminRunner.java:94)
at java.base/java.lang.Thread.run(Thread.java:829)
No direction supplied, using forward translation only.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="SafeBus-COL-50"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="gold2022"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool gold2022"
echo " Input is SafeBus-COL-50, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r384-smll-167891833700151"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/SafeBus-COL-50.tgz
mv SafeBus-COL-50 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;