Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r128-tall-167814505300611.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool gold2022
Input is DNAwalker-PT-14ringLRLarge, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r128-tall-167814505300611
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 552K
-rw-r--r-- 1 mcc users 7.2K Feb 25 13:01 CTLCardinality.txt
-rw-r--r-- 1 mcc users 80K Feb 25 13:01 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.1K Feb 25 13:00 CTLFireability.txt
-rw-r--r-- 1 mcc users 55K Feb 25 13:00 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:55 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Feb 25 15:55 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Feb 25 15:55 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:55 LTLFireability.xml
-rw-r--r-- 1 mcc users 7.9K Feb 25 13:02 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 77K Feb 25 13:02 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 9.7K Feb 25 13:01 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 81K Feb 25 13:01 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:55 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:55 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 14 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 135K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1678179351603

Running Version 202205111006
[2023-03-07 08:55:52] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2023-03-07 08:55:53] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-07 08:55:53] [INFO ] Load time of PNML (sax parser for PT used): 99 ms
[2023-03-07 08:55:53] [INFO ] Transformed 33 places.
[2023-03-07 08:55:53] [INFO ] Transformed 312 transitions.
[2023-03-07 08:55:53] [INFO ] Parsed PT model containing 33 places and 312 transitions in 210 ms.
Parsed 1 properties from file /home/mcc/execution/ReachabilityDeadlock.xml in 3 ms.
Working with output stream class java.io.PrintStream
Built sparse matrix representations for Structural reductions in 5 ms.8579KB memory used
Starting structural reductions in DEADLOCKS mode, iteration 0 : 33/33 places, 312/312 transitions.
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Applied a total of 0 rules in 29 ms. Remains 33 /33 variables (removed 0) and now considering 312/312 (removed 0) transitions.
[2023-03-07 08:55:53] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:55:53] [INFO ] Computed 0 place invariants in 14 ms
[2023-03-07 08:55:53] [INFO ] Dead Transitions using invariants and state equation in 282 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 33/33 places, 312/312 transitions.
Starting structural reductions in DEADLOCKS mode, iteration 0 : 33/33 places, 312/312 transitions.
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Applied a total of 0 rules in 14 ms. Remains 33 /33 variables (removed 0) and now considering 312/312 (removed 0) transitions.
[2023-03-07 08:55:53] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:55:53] [INFO ] Computed 0 place invariants in 6 ms
[2023-03-07 08:55:53] [INFO ] Implicit Places using invariants in 74 ms returned []
[2023-03-07 08:55:53] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:55:53] [INFO ] Computed 0 place invariants in 5 ms
[2023-03-07 08:55:53] [INFO ] State equation strengthened by 71 read => feed constraints.
[2023-03-07 08:55:54] [INFO ] Implicit Places using invariants and state equation in 386 ms returned []
Implicit Place search using SMT with State Equation took 461 ms to find 0 implicit places.
[2023-03-07 08:55:54] [INFO ] Redundant transitions in 18 ms returned []
[2023-03-07 08:55:54] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:55:54] [INFO ] Computed 0 place invariants in 7 ms
[2023-03-07 08:55:54] [INFO ] Dead Transitions using invariants and state equation in 131 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 33/33 places, 312/312 transitions.
Random walk for 1250000 steps, including 96669 resets, run took 4533 ms (no deadlock found). (steps per millisecond=275 )
Random directed walk for 1250003 steps, including 21855 resets, run took 3118 ms (no deadlock found). (steps per millisecond=400 )
[2023-03-07 08:56:01] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:56:01] [INFO ] Computed 0 place invariants in 5 ms
[2023-03-07 08:56:01] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2023-03-07 08:56:01] [INFO ] [Real]Absence check using state equation in 46 ms returned sat
[2023-03-07 08:56:02] [INFO ] Solution in real domain found non-integer solution.
[2023-03-07 08:56:02] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2023-03-07 08:56:02] [INFO ] [Nat]Absence check using state equation in 63 ms returned sat
[2023-03-07 08:56:02] [INFO ] State equation strengthened by 71 read => feed constraints.
[2023-03-07 08:56:02] [INFO ] [Nat]Added 71 Read/Feed constraints in 15 ms returned sat
[2023-03-07 08:56:02] [INFO ] Computed and/alt/rep : 72/612/72 causal constraints (skipped 209 transitions) in 21 ms.
[2023-03-07 08:56:04] [INFO ] Added : 3 causal constraints over 2 iterations in 2776 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 9 ms.
Parikh directed walk for 1700 steps, including 143 resets, run took 14 ms. (steps per millisecond=121 )
Random directed walk for 500010 steps, including 8749 resets, run took 1205 ms (no deadlock found). (steps per millisecond=414 )
Random walk for 500000 steps, including 38801 resets, run took 1727 ms (no deadlock found). (steps per millisecond=289 )
Random directed walk for 500002 steps, including 8696 resets, run took 1192 ms (no deadlock found). (steps per millisecond=419 )
Random walk for 500000 steps, including 38665 resets, run took 1721 ms (no deadlock found). (steps per millisecond=290 )
Starting structural reductions in DEADLOCKS mode, iteration 0 : 33/33 places, 312/312 transitions.
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Computed a total of 6 stabilizing places and 12 stable transitions
Applied a total of 0 rules in 10 ms. Remains 33 /33 variables (removed 0) and now considering 312/312 (removed 0) transitions.
[2023-03-07 08:56:10] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:56:10] [INFO ] Computed 0 place invariants in 2 ms
[2023-03-07 08:56:10] [INFO ] Implicit Places using invariants in 50 ms returned []
[2023-03-07 08:56:10] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:56:10] [INFO ] Computed 0 place invariants in 2 ms
[2023-03-07 08:56:10] [INFO ] State equation strengthened by 71 read => feed constraints.
[2023-03-07 08:56:11] [INFO ] Implicit Places using invariants and state equation in 468 ms returned []
Implicit Place search using SMT with State Equation took 524 ms to find 0 implicit places.
[2023-03-07 08:56:11] [INFO ] Redundant transitions in 15 ms returned []
[2023-03-07 08:56:11] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:56:11] [INFO ] Computed 0 place invariants in 1 ms
[2023-03-07 08:56:11] [INFO ] Dead Transitions using invariants and state equation in 163 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 33/33 places, 312/312 transitions.
Random walk for 1250000 steps, including 96651 resets, run took 4476 ms (no deadlock found). (steps per millisecond=279 )
Random directed walk for 1250022 steps, including 21813 resets, run took 3100 ms (no deadlock found). (steps per millisecond=403 )
[2023-03-07 08:56:19] [INFO ] Flow matrix only has 311 transitions (discarded 1 similar events)
// Phase 1: matrix 311 rows 33 cols
[2023-03-07 08:56:19] [INFO ] Computed 0 place invariants in 5 ms
[2023-03-07 08:56:19] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2023-03-07 08:56:19] [INFO ] [Real]Absence check using state equation in 52 ms returned sat
[2023-03-07 08:56:19] [INFO ] Solution in real domain found non-integer solution.
[2023-03-07 08:56:19] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2023-03-07 08:56:19] [INFO ] [Nat]Absence check using state equation in 92 ms returned sat
[2023-03-07 08:56:19] [INFO ] State equation strengthened by 71 read => feed constraints.
[2023-03-07 08:56:19] [INFO ] [Nat]Added 71 Read/Feed constraints in 13 ms returned sat
[2023-03-07 08:56:19] [INFO ] Computed and/alt/rep : 72/612/72 causal constraints (skipped 209 transitions) in 21 ms.
[2023-03-07 08:56:22] [INFO ] Added : 3 causal constraints over 2 iterations in 2793 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 9 ms.
Parikh directed walk for 1700 steps, including 143 resets, run took 7 ms. (steps per millisecond=242 )
Random directed walk for 500000 steps, including 8762 resets, run took 1279 ms (no deadlock found). (steps per millisecond=390 )
Random walk for 500000 steps, including 38526 resets, run took 1713 ms (no deadlock found). (steps per millisecond=291 )
Random directed walk for 500029 steps, including 8718 resets, run took 1259 ms (no deadlock found). (steps per millisecond=397 )
Random walk for 500000 steps, including 38745 resets, run took 1748 ms (no deadlock found). (steps per millisecond=286 )
[2023-03-07 08:56:28] [INFO ] Flatten gal took : 109 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin3018931874648266147
[2023-03-07 08:56:28] [INFO ] Applying decomposition
[2023-03-07 08:56:28] [INFO ] Flatten gal took : 54 ms
[2023-03-07 08:56:28] [INFO ] Computing symmetric may disable matrix : 312 transitions.
[2023-03-07 08:56:28] [INFO ] Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-07 08:56:28] [INFO ] Computing symmetric may enable matrix : 312 transitions.
[2023-03-07 08:56:28] [INFO ] Computation of Complete enable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-07 08:56:28] [INFO ] Computing Do-Not-Accords matrix : 312 transitions.
[2023-03-07 08:56:28] [INFO ] Computation of Completed DNA matrix. took 7 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-07 08:56:28] [INFO ] Built C files in 275ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin3018931874648266147
Running compilation step : cd /tmp/ltsmin3018931874648266147;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/limit_time.pl' '360' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Converted graph to binary with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/convert-linux64' '-i' '/tmp/graph12189838316890405182.txt' '-o' '/tmp/graph12189838316890405182.bin' '-w' '/tmp/graph12189838316890405182.weights'
Built communities with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/louvain-linux64' '/tmp/graph12189838316890405182.bin' '-l' '-1' '-v' '-w' '/tmp/graph12189838316890405182.weights' '-q' '0' '-e' '0.001'
[2023-03-07 08:56:29] [INFO ] Decomposing Gal with order
[2023-03-07 08:56:29] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-07 08:56:29] [INFO ] Removed a total of 544 redundant transitions.
[2023-03-07 08:56:29] [INFO ] Flatten gal took : 153 ms
[2023-03-07 08:56:29] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 2 ms.
[2023-03-07 08:56:29] [INFO ] Time to serialize gal into /tmp/ReachabilityDeadlock17372840157655339991.gal : 4 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-ctl-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityDeadlock17372840157655339991.gal' '-t' 'CGAL' '-ctl' 'DEADLOCK'

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/R...226
No direction supplied, using forward translation only.
Compilation finished in 1284 ms.
Running link step : cd /tmp/ltsmin3018931874648266147;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 62 ms.
Running LTSmin : cd /tmp/ltsmin3018931874648266147;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202205111006/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-d'
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.86088e+09,6.48063,187980,9094,9,340944,203,379,662184,14,193,0


Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
dead,0,8.21204,187980,1,0,340944,203,1378,662184,51,211,297730

System contains 0 deadlocks (shown below if less than --print-limit option) !
FORMULA ReachabilityDeadlock FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
[ 0 ]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.
Total runtime 53615 ms.

BK_STOP 1678179406668

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="DNAwalker-PT-14ringLRLarge"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="gold2022"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool gold2022"
echo " Input is DNAwalker-PT-14ringLRLarge, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r128-tall-167814505300611"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/DNAwalker-PT-14ringLRLarge.tgz
mv DNAwalker-PT-14ringLRLarge execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;