Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r011-oct2-167813600000320.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.......................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-5348
Executing tool smartxred
Input is Angiogenesis-PT-01, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r011-oct2-167813600000320
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 532K
-rw-r--r-- 1 mcc users 7.3K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 66K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.6K Feb 26 14:53 CTLFireability.txt
-rw-r--r-- 1 mcc users 38K Feb 26 14:53 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.1K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 18K Feb 26 14:53 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 175K Feb 26 14:53 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.8K Feb 26 14:53 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 80K Feb 26 14:53 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 34K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1678733264057

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=smartxred
BK_EXAMINATION=StateSpace
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-01
Applying reductions before tool smart
Invoking reducer
Running Version 202303021504
[2023-03-13 18:47:46] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -timeout, 360, -rebuildPNML]
[2023-03-13 18:47:46] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-13 18:47:46] [INFO ] Load time of PNML (sax parser for PT used): 35 ms
[2023-03-13 18:47:46] [INFO ] Transformed 39 places.
[2023-03-13 18:47:46] [INFO ] Transformed 64 transitions.
[2023-03-13 18:47:46] [INFO ] Found NUPN structural information;
[2023-03-13 18:47:46] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 107 ms.
[2023-03-13 18:47:46] [INFO ] Export to PNML in file /home/mcc/execution/model.sr.pnml of net with 39 places, 64 transitions and 185 arcs took 3 ms.
Total runtime 147 ms.
There are residual formulas that ITS could not solve within timeout
======================================================
========== this is Smart for the MCC'2018 ============
======================================================
Running Angiogenesis (PT), instance 01
Examination StateSpace
Parser /home/mcc/BenchKit/bin//../reducer/bin//../../smart/bin//parser/StateSpaceParse.jar
Model checker /home/mcc/BenchKit/bin//../reducer/bin//../../smart/bin//main//smart

Filename model.pnml
Petri model created: 39 places, 64 transitions, 185 arcs.
AT ITER 0 NEW BEST:: SOT 1589 SOS 744 HAS SOPS 744 HAS SOUS 583 HAS SOUPS 583 WITH SCORE 583.744
AT ITER 6 NEW BEST:: SOT 1577 SOS 744 HAS SOPS 744 HAS SOUS 572 HAS SOUPS 572 WITH SCORE 572.744
AT ITER 9 NEW BEST:: SOT 1575 SOS 742 HAS SOPS 742 HAS SOUS 568 HAS SOUPS 568 WITH SCORE 568.742
AT ITER 14 NEW BEST:: SOT 1563 SOS 739 HAS SOPS 739 HAS SOUS 553 HAS SOUPS 553 WITH SCORE 553.739
AT ITER 19 NEW BEST:: SOT 1563 SOS 735 HAS SOPS 735 HAS SOUS 553 HAS SOUPS 553 WITH SCORE 553.735
AT ITER 24 NEW BEST:: SOT 1555 SOS 775 HAS SOPS 775 HAS SOUS 550 HAS SOUPS 550 WITH SCORE 550.775
AT ITER 33 NEW BEST:: SOT 1552 SOS 766 HAS SOPS 766 HAS SOUS 547 HAS SOUPS 547 WITH SCORE 547.766
AT ITER 34 NEW BEST:: SOT 1538 SOS 756 HAS SOPS 756 HAS SOUS 536 HAS SOUPS 536 WITH SCORE 536.756
AT ITER 40 NEW BEST:: SOT 1541 SOS 753 HAS SOPS 753 HAS SOUS 532 HAS SOUPS 532 WITH SCORE 532.753
AT ITER 76 NEW BEST:: SOT 1541 SOS 752 HAS SOPS 752 HAS SOUS 532 HAS SOUPS 532 WITH SCORE 532.752
AT ITER 89 NEW BEST:: SOT 1541 SOS 751 HAS SOPS 751 HAS SOUS 531 HAS SOUPS 531 WITH SCORE 531.751
AT ITER 94 NEW BEST:: SOT 1533 SOS 745 HAS SOPS 745 HAS SOUS 524 HAS SOUPS 524 WITH SCORE 524.745
AT ITER 113 NEW BEST:: SOT 1532 SOS 743 HAS SOPS 743 HAS SOUS 523 HAS SOUPS 523 WITH SCORE 523.743
AT ITER 119 NEW BEST:: SOT 1532 SOS 739 HAS SOPS 739 HAS SOUS 520 HAS SOUPS 520 WITH SCORE 520.739
AT ITER 121 NEW BEST:: SOT 1534 SOS 737 HAS SOPS 737 HAS SOUS 520 HAS SOUPS 520 WITH SCORE 520.737
AT ITER 123 NEW BEST:: SOT 1533 SOS 736 HAS SOPS 736 HAS SOUS 517 HAS SOUPS 517 WITH SCORE 517.736
AT ITER 124 NEW BEST:: SOT 1535 SOS 738 HAS SOPS 738 HAS SOUS 511 HAS SOUPS 511 WITH SCORE 511.738
AT ITER 137 NEW BEST:: SOT 1532 SOS 735 HAS SOPS 735 HAS SOUS 507 HAS SOUPS 507 WITH SCORE 507.735
AT ITER 140 NEW BEST:: SOT 1530 SOS 753 HAS SOPS 753 HAS SOUS 505 HAS SOUPS 505 WITH SCORE 505.753
AT ITER 147 NEW BEST:: SOT 1520 SOS 726 HAS SOPS 726 HAS SOUS 492 HAS SOUPS 492 WITH SCORE 492.726
AT ITER 155 NEW BEST:: SOT 1518 SOS 724 HAS SOPS 724 HAS SOUS 490 HAS SOUPS 490 WITH SCORE 490.724
AT ITER 160 NEW BEST:: SOT 1504 SOS 719 HAS SOPS 719 HAS SOUS 482 HAS SOUPS 482 WITH SCORE 482.719
AT ITER 164 NEW BEST:: SOT 1504 SOS 703 HAS SOPS 703 HAS SOUS 482 HAS SOUPS 482 WITH SCORE 482.703
AT ITER 169 NEW BEST:: SOT 1506 SOS 685 HAS SOPS 685 HAS SOUS 482 HAS SOUPS 482 WITH SCORE 482.685
AT ITER 172 NEW BEST:: SOT 1506 SOS 685 HAS SOPS 685 HAS SOUS 481 HAS SOUPS 481 WITH SCORE 481.685
AT ITER 191 NEW BEST:: SOT 1506 SOS 683 HAS SOPS 683 HAS SOUS 480 HAS SOUPS 480 WITH SCORE 480.683
AT ITER 193 NEW BEST:: SOT 1504 SOS 679 HAS SOPS 679 HAS SOUS 474 HAS SOUPS 474 WITH SCORE 474.679
AT ITER 221 NEW BEST:: SOT 1505 SOS 672 HAS SOPS 672 HAS SOUS 462 HAS SOUPS 462 WITH SCORE 462.672
AT ITER 229 NEW BEST:: SOT 1499 SOS 654 HAS SOPS 654 HAS SOUS 452 HAS SOUPS 452 WITH SCORE 452.654
AT ITER 243 NEW BEST:: SOT 1493 SOS 684 HAS SOPS 684 HAS SOUS 444 HAS SOUPS 444 WITH SCORE 444.684
AT ITER 311 NEW BEST:: SOT 1483 SOS 680 HAS SOPS 680 HAS SOUS 440 HAS SOUPS 440 WITH SCORE 440.68
AT ITER 319 NEW BEST:: SOT 1480 SOS 652 HAS SOPS 652 HAS SOUS 437 HAS SOUPS 437 WITH SCORE 437.652
AT ITER 334 NEW BEST:: SOT 1480 SOS 650 HAS SOPS 650 HAS SOUS 437 HAS SOUPS 437 WITH SCORE 437.65
AT ITER 343 NEW BEST:: SOT 1477 SOS 649 HAS SOPS 649 HAS SOUS 436 HAS SOUPS 436 WITH SCORE 436.649
AT ITER 386 NEW BEST:: SOT 1480 SOS 645 HAS SOPS 645 HAS SOUS 432 HAS SOUPS 432 WITH SCORE 432.645
AT ITER 407 NEW BEST:: SOT 1474 SOS 639 HAS SOPS 639 HAS SOUS 422 HAS SOUPS 422 WITH SCORE 422.639
AT ITER 481 NEW BEST:: SOT 1469 SOS 633 HAS SOPS 633 HAS SOUS 417 HAS SOUPS 417 WITH SCORE 417.633
AT ITER 489 NEW BEST:: SOT 1465 SOS 633 HAS SOPS 633 HAS SOUS 413 HAS SOUPS 413 WITH SCORE 413.633
AT ITER 504 NEW BEST:: SOT 1466 SOS 630 HAS SOPS 630 HAS SOUS 413 HAS SOUPS 413 WITH SCORE 413.63
AT ITER 507 NEW BEST:: SOT 1460 SOS 624 HAS SOPS 624 HAS SOUS 406 HAS SOUPS 406 WITH SCORE 406.624
AT ITER 512 NEW BEST:: SOT 1460 SOS 624 HAS SOPS 624 HAS SOUS 404 HAS SOUPS 404 WITH SCORE 404.624
AT ITER 525 NEW BEST:: SOT 1456 SOS 623 HAS SOPS 623 HAS SOUS 402 HAS SOUPS 402 WITH SCORE 402.623
AT ITER 591 NEW BEST:: SOT 1456 SOS 622 HAS SOPS 622 HAS SOUS 401 HAS SOUPS 401 WITH SCORE 401.622
AT ITER 598 NEW BEST:: SOT 1446 SOS 638 HAS SOPS 638 HAS SOUS 397 HAS SOUPS 397 WITH SCORE 397.638
AT ITER 626 NEW BEST:: SOT 1442 SOS 634 HAS SOPS 634 HAS SOUS 389 HAS SOUPS 389 WITH SCORE 389.634
AT ITER 643 NEW BEST:: SOT 1442 SOS 632 HAS SOPS 632 HAS SOUS 387 HAS SOUPS 387 WITH SCORE 387.632
AT ITER 650 NEW BEST:: SOT 1440 SOS 624 HAS SOPS 624 HAS SOUS 381 HAS SOUPS 381 WITH SCORE 381.624
AT ITER 713 NEW BEST:: SOT 1438 SOS 622 HAS SOPS 622 HAS SOUS 379 HAS SOUPS 379 WITH SCORE 379.622
AT ITER 823 NEW BEST:: SOT 1435 SOS 619 HAS SOPS 619 HAS SOUS 375 HAS SOUPS 375 WITH SCORE 375.619
AT ITER 945 NEW BEST:: SOT 1433 SOS 615 HAS SOPS 615 HAS SOUS 375 HAS SOUPS 375 WITH SCORE 375.615
AT ITER 1016 NEW BEST:: SOT 1431 SOS 613 HAS SOPS 613 HAS SOUS 375 HAS SOUPS 375 WITH SCORE 375.613
AT ITER 1039 NEW BEST:: SOT 1433 SOS 601 HAS SOPS 601 HAS SOUS 375 HAS SOUPS 375 WITH SCORE 375.601
AT ITER 1178 NEW BEST:: SOT 1431 SOS 599 HAS SOPS 599 HAS SOUS 373 HAS SOUPS 373 WITH SCORE 373.599
AT ITER 1247 NEW BEST:: SOT 1431 SOS 597 HAS SOPS 597 HAS SOUS 372 HAS SOUPS 372 WITH SCORE 372.597
AT ITER 1275 NEW BEST:: SOT 1431 SOS 594 HAS SOPS 594 HAS SOUS 372 HAS SOUPS 372 WITH SCORE 372.594
AT ITER 1377 NEW BEST:: SOT 1428 SOS 600 HAS SOPS 600 HAS SOUS 369 HAS SOUPS 369 WITH SCORE 369.6
AT ITER 1418 NEW BEST:: SOT 1426 SOS 604 HAS SOPS 604 HAS SOUS 367 HAS SOUPS 367 WITH SCORE 367.604
AT ITER 2246 NEW BEST:: SOT 1428 SOS 603 HAS SOPS 603 HAS SOUS 367 HAS SOUPS 367 WITH SCORE 367.603
AT ITER 2494 NEW BEST:: SOT 1428 SOS 602 HAS SOPS 602 HAS SOUS 367 HAS SOUPS 367 WITH SCORE 367.602
AT ITER 2904 NEW BEST:: SOT 1428 SOS 601 HAS SOPS 601 HAS SOUS 367 HAS SOUPS 367 WITH SCORE 367.601
AT ITER 3197 NEW BEST:: SOT 1426 SOS 600 HAS SOPS 600 HAS SOUS 365 HAS SOUPS 365 WITH SCORE 365.6
AT ITER 3666 NEW BEST:: SOT 1424 SOS 620 HAS SOPS 620 HAS SOUS 364 HAS SOUPS 364 WITH SCORE 364.62
STATE_SPACE STATES 110 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS
STATE_SPACE MAX_TOKEN_IN_PLACE 1 TECHNIQUES SEQUENTIAL_PROCESSING IMPLICIT RELATIONS DECISION_DIAGRAMS
STATE_SPACE MAX_TOKEN_PER_MARKING 8 TECHNIQUES SEQUENTIAL_PROCESSING IMPLICIT RELATIONS DECISION_DIAGRAMS
STATE_SPACE TRANSITIONS 288 TECHNIQUES SEQUENTIAL_PROCESSING IMPLICIT RELATIONS DECISION_DIAGRAMS

BK_STOP 1678733268859

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination StateSpace -timeout 360 -rebuildPNML
cp: cannot stat 'StateSpace.sr.xml': No such file or directory

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="smartxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool smartxred"
echo " Input is Angiogenesis-PT-01, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r011-oct2-167813600000320"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;