Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r005-oct2-167813593000366.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-50, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r005-oct2-167813593000366
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 520K
-rw-r--r-- 1 mcc users 12K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 122K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Feb 26 14:52 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 14:52 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 10K Feb 26 14:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 92K Feb 26 14:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.0K Feb 26 14:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 72K Feb 26 14:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678511450576

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-50
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-11 05:10:52] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-11 05:10:52] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-11 05:10:52] [INFO ] Load time of PNML (sax parser for PT used): 47 ms
[2023-03-11 05:10:52] [INFO ] Transformed 39 places.
[2023-03-11 05:10:52] [INFO ] Transformed 64 transitions.
[2023-03-11 05:10:52] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 124 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 29 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10030 steps, including 2 resets, run finished after 84 ms. (steps per millisecond=119 ) properties (out of 16) seen :6
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-07 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-02 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 48 ms. (steps per millisecond=208 ) properties (out of 10) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-00 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 115 ms. (steps per millisecond=86 ) properties (out of 9) seen :0
[2023-03-11 05:10:53] [INFO ] Flatten gal took : 28 ms
[2023-03-11 05:10:53] [INFO ] Flatten gal took : 10 ms
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 37 ms. (steps per millisecond=270 ) properties (out of 9) seen :0
[2023-03-11 05:10:53] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality11481962372978309528.gal : 9 ms
[2023-03-11 05:10:53] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality14890892170485385014.prop : 1 ms
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 56 ms. (steps per millisecond=178 ) properties (out of 9) seen :0
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality11481962372978309528.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality14890892170485385014.prop' '--nowitness' '--gen-order' 'FOLLOW'
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 21 ms. (steps per millisecond=476 ) properties (out of 9) seen :0

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330
Loading property file /tmp/ReachabilityCardinality14890892170485385014.prop.
SDD proceeding with computation,9 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,9 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,9 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,9 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,9 properties remain. new max is 64
SDD size :36 after 554
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 61 ms. (steps per millisecond=163 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 48 ms. (steps per millisecond=208 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 35 ms. (steps per millisecond=285 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 34 ms. (steps per millisecond=294 ) properties (out of 9) seen :0
SDD proceeding with computation,9 properties remain. new max is 128
SDD size :554 after 4703
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 60 ms. (steps per millisecond=166 ) properties (out of 9) seen :0
Running SMT prover for 9 properties.
// Phase 1: matrix 64 rows 39 cols
[2023-03-11 05:10:53] [INFO ] Computed 8 place invariants in 4 ms
[2023-03-11 05:10:53] [INFO ] After 174ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:9
[2023-03-11 05:10:53] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2023-03-11 05:10:53] [INFO ] After 62ms SMT Verify possible using state equation in natural domain returned unsat :2 sat :7
[2023-03-11 05:10:54] [INFO ] After 127ms SMT Verify possible using trap constraints in natural domain returned unsat :2 sat :7
Attempting to minimize the solution found.
Minimization took 51 ms.
[2023-03-11 05:10:54] [INFO ] After 246ms SMT Verify possible using all constraints in natural domain returned unsat :2 sat :7
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-11 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-04 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 9 Parikh solutions to 7 different solutions.
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 1 properties in 109 ms.
Support contains 34 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 8 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 8 ms. Remains : 39/39 places, 64/64 transitions.
Incomplete random walk after 10007 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=1111 ) properties (out of 6) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 41 ms. (steps per millisecond=243 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 30 ms. (steps per millisecond=333 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=500 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 25 ms. (steps per millisecond=400 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=434 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
[2023-03-11 05:10:54] [INFO ] Invariant cache hit.
[2023-03-11 05:10:54] [INFO ] After 47ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2023-03-11 05:10:54] [INFO ] [Nat]Absence check using 8 positive place invariants in 1 ms returned sat
[2023-03-11 05:10:54] [INFO ] After 59ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :5
SDD proceeding with computation,9 properties remain. new max is 256
SDD size :4703 after 12753
[2023-03-11 05:10:54] [INFO ] After 130ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 36 ms.
[2023-03-11 05:10:54] [INFO ] After 239ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :5
Parikh walk visited 0 properties in 25 ms.
Support contains 33 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 2 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 2 ms. Remains : 39/39 places, 64/64 transitions.
Incomplete random walk after 10000 steps, including 2 resets, run finished after 4 ms. (steps per millisecond=2500 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=434 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=769 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 15 ms. (steps per millisecond=666 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=434 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=500 ) properties (out of 5) seen :0
Interrupted probabilistic random walk after 276810 steps, run timeout after 3001 ms. (steps per millisecond=92 ) properties seen :{}
Probabilistic random walk after 276810 steps, saw 172222 distinct states, run finished after 3002 ms. (steps per millisecond=92 ) properties seen :0
Running SMT prover for 5 properties.
[2023-03-11 05:10:57] [INFO ] Invariant cache hit.
[2023-03-11 05:10:57] [INFO ] After 69ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2023-03-11 05:10:57] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2023-03-11 05:10:57] [INFO ] After 67ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :5
[2023-03-11 05:10:58] [INFO ] After 155ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 36 ms.
[2023-03-11 05:10:58] [INFO ] After 235ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :5
Parikh walk visited 0 properties in 12 ms.
Support contains 33 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 2 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 27 ms. Remains : 39/39 places, 64/64 transitions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 2 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2023-03-11 05:10:58] [INFO ] Invariant cache hit.
[2023-03-11 05:10:58] [INFO ] Implicit Places using invariants in 26 ms returned []
[2023-03-11 05:10:58] [INFO ] Invariant cache hit.
[2023-03-11 05:10:58] [INFO ] Implicit Places using invariants and state equation in 137 ms returned []
Implicit Place search using SMT with State Equation took 167 ms to find 0 implicit places.
[2023-03-11 05:10:58] [INFO ] Redundant transitions in 1 ms returned []
[2023-03-11 05:10:58] [INFO ] Invariant cache hit.
[2023-03-11 05:10:58] [INFO ] Dead Transitions using invariants and state equation in 52 ms found 0 transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 233 ms. Remains : 39/39 places, 64/64 transitions.
Applied a total of 0 rules in 1 ms. Remains 39 /39 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Running SMT prover for 5 properties.
[2023-03-11 05:10:58] [INFO ] Invariant cache hit.
[2023-03-11 05:10:58] [INFO ] After 71ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2023-03-11 05:10:58] [INFO ] [Nat]Absence check using 8 positive place invariants in 1 ms returned sat
[2023-03-11 05:10:58] [INFO ] After 44ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :5
[2023-03-11 05:10:58] [INFO ] After 100ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 66 ms.
[2023-03-11 05:10:58] [INFO ] After 283ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :5
[2023-03-11 05:10:58] [INFO ] Flatten gal took : 6 ms
[2023-03-11 05:10:58] [INFO ] Flatten gal took : 5 ms
[2023-03-11 05:10:58] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality13114708024005023063.gal : 1 ms
[2023-03-11 05:10:58] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality17111220627607709218.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality13114708024005023063.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality17111220627607709218.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330
Loading property file /tmp/ReachabilityCardinality17111220627607709218.prop.
SDD proceeding with computation,5 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,5 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,5 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,5 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,5 properties remain. new max is 64
SDD size :36 after 554
SDD proceeding with computation,5 properties remain. new max is 128
SDD size :554 after 4703
SDD proceeding with computation,5 properties remain. new max is 256
SDD size :4703 after 12753
Detected timeout of ITS tools.
[2023-03-11 05:11:13] [INFO ] Flatten gal took : 5 ms
[2023-03-11 05:11:13] [INFO ] Applying decomposition
[2023-03-11 05:11:13] [INFO ] Flatten gal took : 4 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph9110613411625390404.txt' '-o' '/tmp/graph9110613411625390404.bin' '-w' '/tmp/graph9110613411625390404.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph9110613411625390404.bin' '-l' '-1' '-v' '-w' '/tmp/graph9110613411625390404.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:11:13] [INFO ] Decomposing Gal with order
[2023-03-11 05:11:14] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:11:14] [INFO ] Removed a total of 76 redundant transitions.
[2023-03-11 05:11:14] [INFO ] Flatten gal took : 67 ms
[2023-03-11 05:11:14] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 1 ms.
[2023-03-11 05:11:14] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality5700195462044870291.gal : 2 ms
[2023-03-11 05:11:14] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality11672772031564026808.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality5700195462044870291.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality11672772031564026808.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality11672772031564026808.prop.
SDD proceeding with computation,5 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,5 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,5 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,5 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,5 properties remain. new max is 64
SDD size :36 after 306
SDD proceeding with computation,5 properties remain. new max is 128
SDD size :306 after 43911
SDD proceeding with computation,5 properties remain. new max is 256
SDD size :43911 after 197877
SDD proceeding with computation,5 properties remain. new max is 512
SDD size :197877 after 198705
SDD proceeding with computation,5 properties remain. new max is 1024
SDD size :198705 after 201897
SDD proceeding with computation,5 properties remain. new max is 2048
SDD size :201897 after 213081
SDD proceeding with computation,5 properties remain. new max is 4096
SDD size :213081 after 256905
SDD proceeding with computation,5 properties remain. new max is 8192
SDD size :256905 after 1.75895e+08
SDD proceeding with computation,5 properties remain. new max is 16384
SDD size :1.75895e+08 after 2.14938e+11
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin2112027708588109676
[2023-03-11 05:11:29] [INFO ] Built C files in 38ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin2112027708588109676
Running compilation step : cd /tmp/ltsmin2112027708588109676;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/limit_time.pl' '3' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Compilation finished in 319 ms.
Running link step : cd /tmp/ltsmin2112027708588109676;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 63 ms.
Running LTSmin : cd /tmp/ltsmin2112027708588109676;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality01==true'
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
[2023-03-11 05:11:44] [INFO ] Flatten gal took : 11 ms
[2023-03-11 05:11:44] [INFO ] Applying decomposition
[2023-03-11 05:11:44] [INFO ] Flatten gal took : 3 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph16893315496099086422.txt' '-o' '/tmp/graph16893315496099086422.bin' '-w' '/tmp/graph16893315496099086422.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph16893315496099086422.bin' '-l' '-1' '-v' '-w' '/tmp/graph16893315496099086422.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:11:44] [INFO ] Decomposing Gal with order
[2023-03-11 05:11:44] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:11:44] [INFO ] Removed a total of 76 redundant transitions.
[2023-03-11 05:11:44] [INFO ] Flatten gal took : 8 ms
[2023-03-11 05:11:44] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 1 ms.
[2023-03-11 05:11:44] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality7494168817278848062.gal : 2 ms
[2023-03-11 05:11:44] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality4631881121380450929.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality7494168817278848062.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality4631881121380450929.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...328
Loading property file /tmp/ReachabilityCardinality4631881121380450929.prop.
SDD proceeding with computation,5 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,5 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,5 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,5 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,5 properties remain. new max is 64
SDD size :36 after 765
SDD proceeding with computation,5 properties remain. new max is 128
SDD size :765 after 10394
SDD proceeding with computation,5 properties remain. new max is 256
SDD size :10394 after 10652
SDD proceeding with computation,5 properties remain. new max is 512
SDD size :10652 after 11166
SDD proceeding with computation,5 properties remain. new max is 1024
SDD size :11166 after 12192
SDD proceeding with computation,5 properties remain. new max is 2048
SDD size :12192 after 14241
SDD proceeding with computation,5 properties remain. new max is 4096
SDD size :14241 after 18340
SDD proceeding with computation,5 properties remain. new max is 8192
SDD size :18340 after 2.26012e+08
SDD proceeding with computation,5 properties remain. new max is 16384
SDD size :2.26012e+08 after 6.58332e+08
SDD proceeding with computation,9 properties remain. new max is 512
SDD size :12753 after 3.3853e+07
SDD proceeding with computation,5 properties remain. new max is 32768
SDD size :6.58332e+08 after 3.01642e+09
Reachability property Angiogenesis-PT-50-ReachabilityCardinality-12 is true.
SDD proceeding with computation,5 properties remain. new max is 65536
SDD size :3.01642e+09 after 9.60205e+09
SDD proceeding with computation,5 properties remain. new max is 131072
SDD size :9.60205e+09 after 2.81613e+10
SDD proceeding with computation,8 properties remain. new max is 512
SDD size :3.3853e+07 after 1.67592e+08
SDD proceeding with computation,5 properties remain. new max is 262144
SDD size :2.81613e+10 after 7.10432e+10
SDD proceeding with computation,8 properties remain. new max is 1024
SDD size :1.67592e+08 after 2.23728e+08
Invariant property Angiogenesis-PT-50-ReachabilityCardinality-15 does not hold.
Detected timeout of ITS tools.
Detected timeout of ITS tools.
[2023-03-11 05:41:44] [INFO ] Flatten gal took : 3 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin13710399490381889756
[2023-03-11 05:41:44] [INFO ] Computing symmetric may disable matrix : 64 transitions.
[2023-03-11 05:41:44] [INFO ] Computation of Complete disable matrix. took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:44] [INFO ] Computing symmetric may enable matrix : 64 transitions.
[2023-03-11 05:41:44] [INFO ] Computation of Complete enable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:44] [INFO ] Computing Do-Not-Accords matrix : 64 transitions.
[2023-03-11 05:41:44] [INFO ] Computation of Completed DNA matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:44] [INFO ] Built C files in 10ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin13710399490381889756
Running compilation step : cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/limit_time.pl' '144' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
[2023-03-11 05:41:44] [INFO ] Applying decomposition
[2023-03-11 05:41:44] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph18324789005224987018.txt' '-o' '/tmp/graph18324789005224987018.bin' '-w' '/tmp/graph18324789005224987018.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph18324789005224987018.bin' '-l' '-1' '-v' '-w' '/tmp/graph18324789005224987018.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:41:44] [INFO ] Decomposing Gal with order
[2023-03-11 05:41:44] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:41:44] [INFO ] Removed a total of 76 redundant transitions.
[2023-03-11 05:41:44] [INFO ] Flatten gal took : 11 ms
[2023-03-11 05:41:44] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 1 ms.
[2023-03-11 05:41:44] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality12967350532377488176.gal : 1 ms
[2023-03-11 05:41:44] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality3312447446617181617.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality12967350532377488176.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality3312447446617181617.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality3312447446617181617.prop.
SDD proceeding with computation,5 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,5 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,5 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,5 properties remain. new max is 32
SDD size :19 after 36
Compilation finished in 145 ms.
Running link step : cd /tmp/ltsmin13710399490381889756;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 21 ms.
Running LTSmin : cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality01==true'
SDD proceeding with computation,5 properties remain. new max is 64
SDD size :36 after 969
SDD proceeding with computation,5 properties remain. new max is 128
SDD size :969 after 13750
SDD proceeding with computation,5 properties remain. new max is 256
SDD size :13750 after 17893
SDD proceeding with computation,5 properties remain. new max is 512
SDD size :17893 after 18425
SDD proceeding with computation,5 properties remain. new max is 1024
SDD size :18425 after 19440
SDD proceeding with computation,5 properties remain. new max is 2048
SDD size :19440 after 21467
SDD proceeding with computation,5 properties remain. new max is 4096
SDD size :21467 after 25521
SDD proceeding with computation,5 properties remain. new max is 8192
SDD size :25521 after 37592
SDD proceeding with computation,5 properties remain. new max is 16384
SDD size :37592 after 62936
SDD proceeding with computation,5 properties remain. new max is 32768
SDD size :62936 after 111032
SDD proceeding with computation,5 properties remain. new max is 65536
SDD size :111032 after 207268
SDD proceeding with computation,5 properties remain. new max is 131072
SDD size :207268 after 402285
SDD proceeding with computation,5 properties remain. new max is 262144
SDD size :402285 after 4.54836e+06
WARNING : LTSmin timed out (>720 s) on command cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality01==true'
Running LTSmin : cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality03==true'
WARNING : LTSmin timed out (>720 s) on command cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality03==true'
Running LTSmin : cd /tmp/ltsmin13710399490381889756;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityCardinality05==true'
TIME LIMIT: Killed by timeout after 3600 seconds
MemTotal: 16393220 kB
MemFree: 2625416 kB
After kill :
MemTotal: 16393220 kB
MemFree: 16076532 kB

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
++ perl -pe 's/.*\.//g'
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-50, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r005-oct2-167813593000366"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;