Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r005-oct2-167813593000351.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-20, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r005-oct2-167813593000351
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 512K
-rw-r--r-- 1 mcc users 8.3K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 82K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.5K Feb 26 14:55 CTLFireability.txt
-rw-r--r-- 1 mcc users 51K Feb 26 14:55 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 16K Feb 26 14:57 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 146K Feb 26 14:57 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.4K Feb 26 14:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 64K Feb 26 14:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1678509673562

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-20
Not applying reductions.
Model is PT
ReachabilityFireability PT
Running Version 202303021504
[2023-03-11 04:41:16] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-11 04:41:16] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-11 04:41:16] [INFO ] Load time of PNML (sax parser for PT used): 30 ms
[2023-03-11 04:41:16] [INFO ] Transformed 39 places.
[2023-03-11 04:41:16] [INFO ] Transformed 64 transitions.
[2023-03-11 04:41:16] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 140 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 10 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10009 steps, including 3 resets, run finished after 146 ms. (steps per millisecond=68 ) properties (out of 16) seen :6
FORMULA Angiogenesis-PT-20-ReachabilityFireability-14 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityFireability-12 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityFireability-09 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-20-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 81 ms. (steps per millisecond=123 ) properties (out of 10) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
[2023-03-11 04:41:16] [INFO ] Flatten gal took : 42 ms
[2023-03-11 04:41:16] [INFO ] Flatten gal took : 17 ms
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 105 ms. (steps per millisecond=95 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 38 ms. (steps per millisecond=263 ) properties (out of 9) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
[2023-03-11 04:41:16] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality12400863227493031697.gal : 8 ms
[2023-03-11 04:41:16] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality10444008821977815534.prop : 2 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality12400863227493031697.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality10444008821977815534.prop' '--nowitness' '--gen-order' 'FOLLOW'

Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 40 ms. (steps per millisecond=250 ) properties (out of 8) seen :0
its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330
Loading property file /tmp/ReachabilityCardinality10444008821977815534.prop.
SDD proceeding with computation,9 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,9 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,9 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,9 properties remain. new max is 32
SDD size :19 after 125
SDD proceeding with computation,9 properties remain. new max is 64
SDD size :125 after 1003
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 86 ms. (steps per millisecond=116 ) properties (out of 8) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 34 ms. (steps per millisecond=294 ) properties (out of 8) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-07 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 36 ms. (steps per millisecond=277 ) properties (out of 7) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 37 ms. (steps per millisecond=270 ) properties (out of 7) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 30 ms. (steps per millisecond=333 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 30 ms. (steps per millisecond=333 ) properties (out of 6) seen :0
Running SMT prover for 6 properties.
// Phase 1: matrix 64 rows 39 cols
[2023-03-11 04:41:17] [INFO ] Computed 8 place invariants in 4 ms
SDD proceeding with computation,9 properties remain. new max is 128
SDD size :1003 after 34524
[2023-03-11 04:41:17] [INFO ] [Real]Absence check using 8 positive place invariants in 5 ms returned sat
[2023-03-11 04:41:17] [INFO ] After 160ms SMT Verify possible using all constraints in real domain returned unsat :1 sat :0 real:5
[2023-03-11 04:41:17] [INFO ] [Nat]Absence check using 8 positive place invariants in 3 ms returned sat
[2023-03-11 04:41:17] [INFO ] After 69ms SMT Verify possible using state equation in natural domain returned unsat :1 sat :5
[2023-03-11 04:41:17] [INFO ] After 134ms SMT Verify possible using trap constraints in natural domain returned unsat :1 sat :5
Attempting to minimize the solution found.
Minimization took 51 ms.
[2023-03-11 04:41:17] [INFO ] After 268ms SMT Verify possible using all constraints in natural domain returned unsat :1 sat :5
FORMULA Angiogenesis-PT-20-ReachabilityFireability-15 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 6 Parikh solutions to 4 different solutions.
Parikh walk visited 0 properties in 22 ms.
Support contains 33 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 5 place count 36 transition count 62
Applied a total of 5 rules in 13 ms. Remains 36 /39 variables (removed 3) and now considering 62/64 (removed 2) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 14 ms. Remains : 36/39 places, 62/64 transitions.
Incomplete random walk after 10009 steps, including 3 resets, run finished after 16 ms. (steps per millisecond=625 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 28 ms. (steps per millisecond=357 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 25 ms. (steps per millisecond=400 ) properties (out of 5) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-05 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 30 ms. (steps per millisecond=333 ) properties (out of 4) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 21 ms. (steps per millisecond=476 ) properties (out of 4) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 22 ms. (steps per millisecond=454 ) properties (out of 4) seen :1
FORMULA Angiogenesis-PT-20-ReachabilityFireability-11 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Running SMT prover for 3 properties.
// Phase 1: matrix 62 rows 36 cols
[2023-03-11 04:41:17] [INFO ] Computed 6 place invariants in 2 ms
[2023-03-11 04:41:17] [INFO ] [Real]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 04:41:17] [INFO ] After 49ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:3
[2023-03-11 04:41:17] [INFO ] [Nat]Absence check using 6 positive place invariants in 1 ms returned sat
[2023-03-11 04:41:18] [INFO ] After 48ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :3
[2023-03-11 04:41:18] [INFO ] After 85ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :3
Attempting to minimize the solution found.
Minimization took 31 ms.
[2023-03-11 04:41:18] [INFO ] After 149ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :3
FORMULA Angiogenesis-PT-20-ReachabilityFireability-01 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 1 properties in 24 ms.
Support contains 25 out of 36 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 36/36 places, 62/62 transitions.
Partial Free-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 1 place count 36 transition count 62
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 2 place count 36 transition count 62
Applied a total of 2 rules in 6 ms. Remains 36 /36 variables (removed 0) and now considering 62/62 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 7 ms. Remains : 36/36 places, 62/62 transitions.
Incomplete random walk after 10005 steps, including 3 resets, run finished after 10 ms. (steps per millisecond=1000 ) properties (out of 2) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 17 ms. (steps per millisecond=588 ) properties (out of 2) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 15 ms. (steps per millisecond=666 ) properties (out of 2) seen :0
SDD proceeding with computation,9 properties remain. new max is 256
SDD size :34524 after 998607
Interrupted probabilistic random walk after 405242 steps, run timeout after 3001 ms. (steps per millisecond=135 ) properties seen :{}
Probabilistic random walk after 405242 steps, saw 256670 distinct states, run finished after 3004 ms. (steps per millisecond=134 ) properties seen :0
Running SMT prover for 2 properties.
// Phase 1: matrix 62 rows 36 cols
[2023-03-11 04:41:21] [INFO ] Computed 6 place invariants in 1 ms
[2023-03-11 04:41:21] [INFO ] [Real]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 04:41:21] [INFO ] After 29ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2023-03-11 04:41:21] [INFO ] [Nat]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 04:41:21] [INFO ] After 37ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2023-03-11 04:41:21] [INFO ] After 62ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
Minimization took 19 ms.
[2023-03-11 04:41:21] [INFO ] After 132ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
Parikh walk visited 0 properties in 8 ms.
Support contains 25 out of 36 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 36/36 places, 62/62 transitions.
Applied a total of 0 rules in 2 ms. Remains 36 /36 variables (removed 0) and now considering 62/62 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 2 ms. Remains : 36/36 places, 62/62 transitions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 36/36 places, 62/62 transitions.
Applied a total of 0 rules in 1 ms. Remains 36 /36 variables (removed 0) and now considering 62/62 (removed 0) transitions.
[2023-03-11 04:41:21] [INFO ] Invariant cache hit.
[2023-03-11 04:41:21] [INFO ] Implicit Places using invariants in 36 ms returned []
[2023-03-11 04:41:21] [INFO ] Invariant cache hit.
[2023-03-11 04:41:21] [INFO ] Implicit Places using invariants and state equation in 55 ms returned []
Implicit Place search using SMT with State Equation took 94 ms to find 0 implicit places.
[2023-03-11 04:41:21] [INFO ] Redundant transitions in 1 ms returned []
[2023-03-11 04:41:21] [INFO ] Invariant cache hit.
[2023-03-11 04:41:21] [INFO ] Dead Transitions using invariants and state equation in 63 ms found 0 transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 175 ms. Remains : 36/36 places, 62/62 transitions.
Applied a total of 0 rules in 2 ms. Remains 36 /36 variables (removed 0) and now considering 62/62 (removed 0) transitions.
Running SMT prover for 2 properties.
[2023-03-11 04:41:21] [INFO ] Invariant cache hit.
[2023-03-11 04:41:21] [INFO ] [Real]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 04:41:21] [INFO ] After 44ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2023-03-11 04:41:21] [INFO ] [Nat]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 04:41:21] [INFO ] After 32ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2023-03-11 04:41:21] [INFO ] After 61ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
Minimization took 21 ms.
[2023-03-11 04:41:21] [INFO ] After 137ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
[2023-03-11 04:41:21] [INFO ] Flatten gal took : 5 ms
[2023-03-11 04:41:21] [INFO ] Flatten gal took : 6 ms
[2023-03-11 04:41:21] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality10501385256121976910.gal : 2 ms
[2023-03-11 04:41:21] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality10172340227965163298.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality10501385256121976910.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality10172340227965163298.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330
Loading property file /tmp/ReachabilityCardinality10172340227965163298.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :19 after 63
SDD proceeding with computation,2 properties remain. new max is 64
SDD size :63 after 121
SDD proceeding with computation,2 properties remain. new max is 128
SDD size :121 after 2024
SDD proceeding with computation,2 properties remain. new max is 256
SDD size :2024 after 17367
SDD proceeding with computation,2 properties remain. new max is 512
SDD size :17367 after 183015
SDD proceeding with computation,2 properties remain. new max is 1024
SDD size :183015 after 608671
SDD proceeding with computation,2 properties remain. new max is 2048
SDD size :608671 after 1.32568e+06
Detected timeout of ITS tools.
[2023-03-11 04:41:36] [INFO ] Flatten gal took : 5 ms
[2023-03-11 04:41:36] [INFO ] Applying decomposition
[2023-03-11 04:41:36] [INFO ] Flatten gal took : 53 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph16121010458489246483.txt' '-o' '/tmp/graph16121010458489246483.bin' '-w' '/tmp/graph16121010458489246483.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph16121010458489246483.bin' '-l' '-1' '-v' '-w' '/tmp/graph16121010458489246483.weights' '-q' '0' '-e' '0.001'
[2023-03-11 04:41:37] [INFO ] Decomposing Gal with order
[2023-03-11 04:41:37] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 04:41:37] [INFO ] Removed a total of 39 redundant transitions.
[2023-03-11 04:41:37] [INFO ] Flatten gal took : 35 ms
[2023-03-11 04:41:37] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 4 ms.
[2023-03-11 04:41:37] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality15560719191959993211.gal : 2 ms
[2023-03-11 04:41:37] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality16021812408919128036.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality15560719191959993211.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality16021812408919128036.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...309
Loading property file /tmp/ReachabilityCardinality16021812408919128036.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 1771
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :1771 after 11921
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :11921 after 31402
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :31402 after 57162
SDD proceeding with computation,2 properties remain. new max is 64
SDD size :57162 after 111902
SDD proceeding with computation,2 properties remain. new max is 128
SDD size :111902 after 200522
Invariant property Angiogenesis-PT-20-ReachabilityFireability-07 does not hold.
Reachability property Angiogenesis-PT-20-ReachabilityFireability-05 is true.
SDD proceeding with computation,7 properties remain. new max is 256
SDD size :998607 after 1.35543e+07
SDD proceeding with computation,2 properties remain. new max is 256
SDD size :200522 after 1.00746e+06
SDD proceeding with computation,2 properties remain. new max is 512
SDD size :1.00746e+06 after 6.18606e+06
SDD proceeding with computation,2 properties remain. new max is 1024
SDD size :6.18606e+06 after 1.73906e+07
SDD proceeding with computation,2 properties remain. new max is 2048
SDD size :1.73906e+07 after 3.65094e+07
SDD proceeding with computation,2 properties remain. new max is 4096
SDD size :3.65094e+07 after 4.72876e+07
SDD proceeding with computation,2 properties remain. new max is 8192
SDD size :4.72876e+07 after 5.12841e+07
SDD proceeding with computation,2 properties remain. new max is 16384
SDD size :5.12841e+07 after 5.14559e+07
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin12884092689056240860
[2023-03-11 04:41:52] [INFO ] Built C files in 17ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin12884092689056240860
Running compilation step : cd /tmp/ltsmin12884092689056240860;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/limit_time.pl' '3' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Compilation finished in 318 ms.
Running link step : cd /tmp/ltsmin12884092689056240860;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 82 ms.
Running LTSmin : cd /tmp/ltsmin12884092689056240860;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '--when' '-i' 'AngiogenesisPT20ReachabilityFireability06==true'
LTSmin run took 7415 ms.
Found Violation
Running LTSmin : cd /tmp/ltsmin12884092689056240860;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '--when' '-i' 'AngiogenesisPT20ReachabilityFireability08==true'
LTSmin run took 2946 ms.
Found Violation
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
[2023-03-11 04:42:02] [INFO ] Flatten gal took : 8 ms
[2023-03-11 04:42:02] [INFO ] Applying decomposition
[2023-03-11 04:42:02] [INFO ] Flatten gal took : 5 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph7270781645865747708.txt' '-o' '/tmp/graph7270781645865747708.bin' '-w' '/tmp/graph7270781645865747708.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph7270781645865747708.bin' '-l' '-1' '-v' '-w' '/tmp/graph7270781645865747708.weights' '-q' '0' '-e' '0.001'
[2023-03-11 04:42:03] [INFO ] Decomposing Gal with order
[2023-03-11 04:42:03] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 04:42:03] [INFO ] Removed a total of 39 redundant transitions.
[2023-03-11 04:42:03] [INFO ] Flatten gal took : 10 ms
[2023-03-11 04:42:03] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 2 ms.
[2023-03-11 04:42:03] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality1932550516588726835.gal : 2 ms
[2023-03-11 04:42:03] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality5713707257400807323.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality1932550516588726835.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality5713707257400807323.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...307
Loading property file /tmp/ReachabilityCardinality5713707257400807323.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 10
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :10 after 45
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :45 after 171
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :171 after 35144
SDD proceeding with computation,2 properties remain. new max is 64
SDD size :35144 after 114632
SDD proceeding with computation,2 properties remain. new max is 128
SDD size :114632 after 452310
SDD proceeding with computation,2 properties remain. new max is 256
SDD size :452310 after 1.69662e+06
Reachability property Angiogenesis-PT-20-ReachabilityFireability-11 is true.
Reachability property Angiogenesis-PT-20-ReachabilityFireability-08 is true.
FORMULA Angiogenesis-PT-20-ReachabilityFireability-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
SDD proceeding with computation,5 properties remain. new max is 256
SDD size :1.35543e+07 after 8.26612e+07
SDD proceeding with computation,5 properties remain. new max is 512
SDD size :8.26612e+07 after 3.85422e+08
SDD proceeding with computation,5 properties remain. new max is 1024
SDD size :3.85422e+08 after 3.62857e+09
SDD proceeding with computation,5 properties remain. new max is 2048
SDD size :3.62857e+09 after 1.15731e+11
SDD proceeding with computation,2 properties remain. new max is 512
SDD size :4.77324e+10 after 5.4449e+11
Reachability property Angiogenesis-PT-20-ReachabilityFireability-08 is true.
Invariant property Angiogenesis-PT-20-ReachabilityFireability-06 does not hold.
FORMULA Angiogenesis-PT-20-ReachabilityFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
Found states matching all0 target predicate
Will report total states built up to this point. Computation was interrupted after 513 fixpoint passes
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst\_mod\_flat,4.11653e+13,1143.15,3760488,75247,1603,6.0585e+06,85138,212,1.19303e+07,40,1.68233e+06,0
Total reachable state count : 41165313030865

Verifying 2 reachability properties.
Invariant property Angiogenesis-PT-20-ReachabilityFireability-06 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-20-ReachabilityFireability-06,5.64607e+10,1604.38,3757844,8117,606,6.0585e+06,85138,260,1.19303e+07,101,1.68233e+06,0
Reachability property Angiogenesis-PT-20-ReachabilityFireability-08 is true.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-20-ReachabilityFireability-08,25725,1646.56,3757844,72,217,6.0585e+06,85138,323,1.19303e+07,108,1.68233e+06,0
All properties solved without resorting to model-checking.
Total runtime 1693980 ms.

BK_STOP 1678511370915

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-20, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r005-oct2-167813593000351"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;