Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r001-oct2-167813588600344.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool marcie
Input is Angiogenesis-PT-15, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r001-oct2-167813588600344
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 476K
-rw-r--r-- 1 mcc users 8.5K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 85K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Feb 26 14:55 CTLFireability.txt
-rw-r--r-- 1 mcc users 50K Feb 26 14:55 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.7K Feb 26 14:56 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 83K Feb 26 14:56 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 9.6K Feb 26 14:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 89K Feb 26 14:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1678391594507

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marcie
BK_EXAMINATION=StateSpace
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-15
Not applying reductions.
Model is PT
StateSpace PT
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../marcie/bin/marcie --net-file=model.pnml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: Angiogenesis_PT_15
(NrP: 39 NrTr: 64 NrArc: 185)

place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 2.928sec


RS generation: 0m51.424sec


-> reachability set: #nodes 648270 (6.5e+05) #states 1,115,538,966,669,107 (15)



STATE_SPACE STATES 1115538966669107 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

STATE_SPACE MAX_TOKEN_IN_PLACE 15 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

STATE_SPACE MAX_TOKEN_PER_MARKING 120 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

STATE_SPACE TRANSITIONS 27473692410310705 TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
totally nodes used: 16082023 (1.6e+07)
number of garbage collections: 0
fire ops cache: hits/miss/sum: 370216671 108654584 478871255
used/not used/entry size/cache size: 52394702 14714162 16 1024MB
basic ops cache: hits/miss/sum: 38943363 12027868 50971231
used/not used/entry size/cache size: 9031769 7745447 12 192MB
unary ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 8 128MB
abstract ops cache: hits/miss/sum: 0 0 0
used/not used/entry size/cache size: 0 16777216 12 192MB
state nr cache: hits/miss/sum: 44914604 13077630 57992234
used/not used/entry size/cache size: 6502376 1886232 32 256MB
max state cache: hits/miss/sum: 2156507 656360 2812867
used/not used/entry size/cache size: 626789 7761819 32 256MB
uniqueHash elements/entry size/size: 67108864 4 256MB
0 53576136
1 11606308
2 1613999
3 180526
4 30167
5 42634
6 46483
7 10482
8 1651
9 232
>= 10 246

Total processing time: 2m 8.586sec


BK_STOP 1678391723166

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:18034 (281), effective:1362 (21)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-15, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r001-oct2-167813588600344"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;