Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r490-tall-167912709901359.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool marciexred
Input is ViralEpidemic-PT-S16D2C4A03, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r490-tall-167912709901359
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 55M
-rw-r--r-- 1 mcc users 13K Feb 25 21:44 CTLCardinality.txt
-rw-r--r-- 1 mcc users 118K Feb 25 21:44 CTLCardinality.xml
-rw-r--r-- 1 mcc users 7.8K Feb 25 21:16 CTLFireability.txt
-rw-r--r-- 1 mcc users 57K Feb 25 21:16 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:41 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.8K Jan 29 11:41 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.9K Feb 25 17:27 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 17:27 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Feb 25 17:27 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 17:27 LTLFireability.xml
-rw-r--r-- 1 mcc users 20K Feb 25 23:35 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 167K Feb 25 23:35 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 13K Feb 25 22:40 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 83K Feb 25 22:40 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 2.0K Feb 25 17:27 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K Feb 25 17:27 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 equiv_col
-rw-r--r-- 1 mcc users 11 Mar 5 18:23 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:23 iscolored
-rw-r--r-- 1 mcc users 54M Mar 5 18:23 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-00
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-01
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-02
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-03
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-04
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-05
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-06
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-07
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-08
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-09
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-10
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-11
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-12
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-13
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-14
FORMULA_NAME ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1679430068835

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marciexred
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=ViralEpidemic-PT-S16D2C4A03
Applying reductions before tool marcie
Invoking reducer
Running Version 202303021504
[2023-03-21 20:21:10] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -timeout, 360, -rebuildPNML]
[2023-03-21 20:21:10] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-21 20:21:12] [INFO ] Load time of PNML (sax parser for PT used): 1651 ms
[2023-03-21 20:21:12] [INFO ] Transformed 78643 places.
[2023-03-21 20:21:12] [INFO ] Transformed 144177 transitions.
[2023-03-21 20:21:12] [INFO ] Parsed PT model containing 78643 places and 144177 transitions and 353889 arcs in 2085 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 90 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10000 steps, including 2 resets, run finished after 6258 ms. (steps per millisecond=1 ) properties (out of 16) seen :5
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-14 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-11 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-09 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-06 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1277 ms. (steps per millisecond=7 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1213 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1231 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1164 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1198 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1187 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1170 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1183 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1174 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1189 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 1180 ms. (steps per millisecond=8 ) properties (out of 11) seen :0
Running SMT prover for 11 properties.
// Phase 1: matrix 144177 rows 78643 cols
[2023-03-21 20:22:21] [INFO ] Invariants computation overflowed in 49006 ms
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Error writing to Z3 solver: java.io.IOException: Stream closed...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:629)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMTIncremental(DeadlockTester.java:339)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMT(DeadlockTester.java:223)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.applyReductions(ReachabilitySolver.java:95)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:902)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-21 20:22:47] [WARNING] SMT solver failed with error :SMT solver raised an error when submitting script.... while checking expressions.
[2023-03-21 20:22:47] [INFO ] After 25765ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0
Fused 11 Parikh solutions to 1 different solutions.
Parikh walk visited 0 properties in 0 ms.
Support contains 439 out of 78643 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 78643/78643 places, 144177/144177 transitions.
Graph (complete) has 69904 edges and 78643 vertex of which 4201 are kept as prefixes of interest. Removing 74442 places using SCC suffix rule.74 ms
Discarding 74442 places :
Also discarding 135818 output transitions
Drop transitions removed 135818 transitions
Drop transitions removed 4306 transitions
Reduce isomorphic transitions removed 4306 transitions.
Iterating post reduction 0 with 4306 rules applied. Total rules applied 4307 place count 4201 transition count 4053
Performed 92 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 1 with 92 Pre rules applied. Total rules applied 4307 place count 4201 transition count 3961
Deduced a syphon composed of 92 places in 2 ms
Reduce places removed 92 places and 0 transitions.
Iterating global reduction 1 with 184 rules applied. Total rules applied 4491 place count 4109 transition count 3961
Discarding 2943 places :
Symmetric choice reduction at 1 with 2943 rule applications. Total rules 7434 place count 1166 transition count 1005
Iterating global reduction 1 with 2943 rules applied. Total rules applied 10377 place count 1166 transition count 1005
Performed 33 Post agglomeration using F-continuation condition.Transition count delta: 33
Deduced a syphon composed of 33 places in 0 ms
Reduce places removed 33 places and 0 transitions.
Iterating global reduction 1 with 66 rules applied. Total rules applied 10443 place count 1133 transition count 972
Free-agglomeration rule applied 6 times.
Iterating global reduction 1 with 6 rules applied. Total rules applied 10449 place count 1133 transition count 966
Reduce places removed 6 places and 0 transitions.
Iterating post reduction 1 with 6 rules applied. Total rules applied 10455 place count 1127 transition count 966
Applied a total of 10455 rules in 1833 ms. Remains 1127 /78643 variables (removed 77516) and now considering 966/144177 (removed 143211) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 1834 ms. Remains : 1127/78643 places, 966/144177 transitions.
Incomplete random walk after 10001 steps, including 9 resets, run finished after 275 ms. (steps per millisecond=36 ) properties (out of 11) seen :6
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 182 ms. (steps per millisecond=54 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 136 ms. (steps per millisecond=73 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 108 ms. (steps per millisecond=92 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 116 ms. (steps per millisecond=86 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 111 ms. (steps per millisecond=90 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
// Phase 1: matrix 966 rows 1127 cols
[2023-03-21 20:22:50] [INFO ] Computed 165 place invariants in 34 ms
[2023-03-21 20:22:50] [INFO ] [Real]Absence check using 0 positive and 165 generalized place invariants in 42 ms returned sat
[2023-03-21 20:22:50] [INFO ] After 419ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2023-03-21 20:22:51] [INFO ] [Nat]Absence check using 0 positive and 165 generalized place invariants in 41 ms returned sat
[2023-03-21 20:22:52] [INFO ] After 1293ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :5
[2023-03-21 20:22:53] [INFO ] After 2154ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 715 ms.
[2023-03-21 20:22:54] [INFO ] After 3242ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :5
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-05 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Finished Parikh walk after 402 steps, including 0 resets, run visited all 3 properties in 12 ms. (steps per millisecond=33 )
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-12 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-07 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA ViralEpidemic-PT-S16D2C4A03-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 5 properties in 35 ms.
All properties solved without resorting to model-checking.
Total runtime 103702 ms.
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../reducer/bin//../../marcie/bin/marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: ViralEpidemic_PT_S16D2C4A03
(NrP: 78643 NrTr: 144177 NrArc: 353889)

parse formulas
formulas created successfully
place and transition orderings generation:49m10.614sec

TIME LIMIT: Killed by timeout after 3600 seconds
MemTotal: 16393232 kB
MemFree: 5287596 kB
After kill :
MemTotal: 16393232 kB
MemFree: 16041260 kB

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityFireability -timeout 360 -rebuildPNML
check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="ViralEpidemic-PT-S16D2C4A03"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marciexred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marciexred"
echo " Input is ViralEpidemic-PT-S16D2C4A03, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r490-tall-167912709901359"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/ViralEpidemic-PT-S16D2C4A03.tgz
mv ViralEpidemic-PT-S16D2C4A03 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;