Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r244-tall-167856431800401.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
............................................................................................................
=====================================================================
Generated by BenchKit 2-5348
Executing tool lola
Input is MAPKbis-PT-5320, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r244-tall-167856431800401
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 760K
-rw-r--r-- 1 mcc users 8.3K Feb 25 16:19 CTLCardinality.txt
-rw-r--r-- 1 mcc users 76K Feb 25 16:19 CTLCardinality.xml
-rw-r--r-- 1 mcc users 11K Feb 25 16:03 CTLFireability.txt
-rw-r--r-- 1 mcc users 47K Feb 25 16:03 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.3K Feb 25 16:22 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 16:22 LTLCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Feb 25 16:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 21K Feb 25 16:22 LTLFireability.xml
-rw-r--r-- 1 mcc users 16K Feb 25 16:39 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 131K Feb 25 16:39 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 40K Feb 25 16:29 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 153K Feb 25 16:29 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 16:22 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 16:22 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 5 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 170K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1678693775100

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=lola
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=MAPKbis-PT-5320
Not applying reductions.
Model is PT
ReachabilityDeadlock PT
starting LoLA
BK_INPUT MAPKbis-PT-5320
BK_EXAMINATION: ReachabilityDeadlock
bin directory: /home/mcc/BenchKit/bin//../lola/bin/
current directory: /home/mcc/execution
GlobalProperty: ReachabilityDeadlock

FORMULA ReachabilityDeadlock TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT

BK_STOP 1678693775170

--------------------
content from stderr:

lola: MEM LIMIT 32
lola: MEM LIMIT 5
lola: NET
lola: input: PNML file (--pnmlnet)
lola: reading net from /home/mcc/execution/model.pnml
lola: reading pnml
lola: PNML file contains place/transition net
lola: finished parsing
lola: closed net file /home/mcc/execution/model.pnml
lola: REM DEA TR: t = EGFR_equals_0_to_EGFR_equals_1_when_EGFR_stimulus_equals_1_and_GRB2_equals_0_and_PKC_equals_0
lola: REM DEA TR: t = ATM_equals_1_to_ATM_equals_0_when_DNA_damage_equals_0
lola: REM DEA TR: t = FGFR3_equals_0_to_FGFR3_equals_1_when_FGFR3_stimulus_equals_1_and_GRB2_equals_0_and_PKC_equals_0
lola: REM DEA TR: t = TGFBR_equals_0_to_TGFBR_equals_1_when_TGFBR_stimulus_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_GRB2_equals_1
lola: REM DEA TR: t = FRS2_equals_0_to_FRS2_equals_1_when_FGFR3_equals_1_and_GRB2_equals_0_and_SPRY_equals_0
lola: REM DEA TR: t = PLCG_equals_0_to_PLCG_equals_1_when_FGFR3_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_PKC_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_FGFR3_stimulus_equals_0
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_FGFR3_equals_0
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_SPRY_equals_1
lola: REM DEA TR: t = GRB2_equals_0_to_GRB2_equals_1_when_FRS2_equals_1
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_GRB2_equals_1
lola: REM DEA TR: t = GRB2_equals_0_to_GRB2_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = TAK1_equals_0_to_TAK1_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = TGFBR_equals_1_to_TGFBR_equals_0_when_TGFBR_stimulus_equals_0
lola: REM DEA TR: t = SMAD_equals_0_to_SMAD_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_0_and_TAK1_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = TAK1_equals_1_to_TAK1_equals_0_when_TGFBR_equals_0
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_TAK1_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = GADD45_equals_0_to_GADD45_equals_1_when_SMAD_equals_1
lola: REM DEA TR: t = SMAD_equals_1_to_SMAD_equals_0_when_TGFBR_equals_0
lola: A deadlock is reachable.
lola: A deadlock is reachable.

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5320"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool lola"
echo " Input is MAPKbis-PT-5320, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r244-tall-167856431800401"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5320.tgz
mv MAPKbis-PT-5320 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;