Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r244-tall-167856431800396.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
............................
=====================================================================
Generated by BenchKit 2-5348
Executing tool lola
Input is MAPKbis-PT-5310, examination is ReachabilityDeadlock
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r244-tall-167856431800396
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 628K
-rw-r--r-- 1 mcc users 6.4K Feb 25 16:17 CTLCardinality.txt
-rw-r--r-- 1 mcc users 54K Feb 25 16:17 CTLCardinality.xml
-rw-r--r-- 1 mcc users 11K Feb 25 15:59 CTLFireability.txt
-rw-r--r-- 1 mcc users 48K Feb 25 15:59 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 16:22 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Feb 25 16:22 LTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Feb 25 16:22 LTLFireability.txt
-rw-r--r-- 1 mcc users 21K Feb 25 16:22 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K Feb 25 16:35 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 111K Feb 25 16:35 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 22K Feb 25 16:26 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 82K Feb 25 16:26 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 16:22 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 16:22 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 5 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 170K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME ReachabilityDeadlock

=== Now, execution of the tool begins

BK_START 1678693736636

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=lola
BK_EXAMINATION=ReachabilityDeadlock
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=MAPKbis-PT-5310
Not applying reductions.
Model is PT
ReachabilityDeadlock PT
starting LoLA
BK_INPUT MAPKbis-PT-5310
BK_EXAMINATION: ReachabilityDeadlock
bin directory: /home/mcc/BenchKit/bin//../lola/bin/
current directory: /home/mcc/execution
GlobalProperty: ReachabilityDeadlock

BK_STOP 1678694723279

--------------------
content from stderr:

lola: MEM LIMIT 32
lola: MEM LIMIT 5
lola: NET
lola: input: PNML file (--pnmlnet)
lola: reading net from /home/mcc/execution/model.pnml
lola: reading pnml
lola: PNML file contains place/transition net
lola: finished parsing
lola: closed net file /home/mcc/execution/model.pnml
lola: REM DEA TR: t = EGFR_equals_1_to_EGFR_equals_0_when_EGFR_stimulus_equals_0_and_SPRY_equals_0
lola: REM DEA TR: t = EGFR_equals_0_to_EGFR_equals_1_when_EGFR_stimulus_equals_0_and_GRB2_equals_0_and_PKC_equals_0_and_SPRY_equals_1
lola: REM DEA TR: t = ATM_equals_0_to_ATM_equals_1_when_DNA_damage_equals_1
lola: REM DEA TR: t = FGFR3_equals_0_to_FGFR3_equals_1_when_FGFR3_stimulus_equals_1_and_GRB2_equals_0_and_PKC_equals_0
lola: REM DEA TR: t = TAOK_equals_0_to_TAOK_equals_1_when_ATM_equals_1
lola: REM DEA TR: t = ATM_equals_1_to_ATM_equals_0_when_DNA_damage_equals_0
lola: REM DEA TR: t = p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_MDM2_equals_0
lola: REM DEA TR: t = p53_equals_0_to_p53_equals_1_when_ATM_equals_1_and_p38_equals_1
lola: REM DEA TR: t = p53_equals_1_to_p53_equals_0_when_ATM_equals_1_and_MDM2_equals_1_and_p38_equals_0
lola: REM DEA TR: t = TGFBR_equals_0_to_TGFBR_equals_1_when_TGFBR_stimulus_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_GRB2_equals_1
lola: REM DEA TR: t = FRS2_equals_0_to_FRS2_equals_1_when_FGFR3_equals_1_and_GRB2_equals_0_and_SPRY_equals_0
lola: REM DEA TR: t = PLCG_equals_0_to_PLCG_equals_1_when_FGFR3_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_PKC_equals_1
lola: REM DEA TR: t = FGFR3_equals_1_to_FGFR3_equals_0_when_FGFR3_stimulus_equals_0
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_FGFR3_equals_0
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_SPRY_equals_1
lola: REM DEA TR: t = GRB2_equals_0_to_GRB2_equals_1_when_FRS2_equals_1
lola: REM DEA TR: t = FRS2_equals_1_to_FRS2_equals_0_when_GRB2_equals_1
lola: REM DEA TR: t = GRB2_equals_0_to_GRB2_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = TAK1_equals_0_to_TAK1_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = TGFBR_equals_1_to_TGFBR_equals_0_when_TGFBR_stimulus_equals_0
lola: REM DEA TR: t = SMAD_equals_0_to_SMAD_equals_1_when_TGFBR_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_0_and_TAOK_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = TAOK_equals_1_to_TAOK_equals_0_when_ATM_equals_0
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_TAOK_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_0_and_TAK1_equals_1_and_TAOK_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = JNK_equals_0_to_JNK_equals_1_when_DUSP1_equals_0_and_TAK1_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_0_and_MTK1_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = TAK1_equals_1_to_TAK1_equals_0_when_TGFBR_equals_0
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_TAK1_equals_1
lola: REM DEA TR: t = p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_TAK1_equals_1
lola: REM DEA TR: t = GADD45_equals_0_to_GADD45_equals_1_when_SMAD_equals_1
lola: REM DEA TR: t = SMAD_equals_1_to_SMAD_equals_0_when_TGFBR_equals_0
lola: STP: formula with 18452 variables and 82938 clauses shipped to Minisat
lola: SIPHON RESULT 1
/home/mcc/BenchKit/bin//../lola/bin//../BenchKit_head.sh: line 63: 373 Killed lola --conf=$BIN_DIR/configfiles/globalconf --check=deadlockfreedom $DIR/model.pnml

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool lola"
echo " Input is MAPKbis-PT-5310, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r244-tall-167856431800396"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
if [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "UpperBounds" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] || [ "ReachabilityDeadlock" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityDeadlock" = "ReachabilityDeadlock" ] || [ "ReachabilityDeadlock" = "QuasiLiveness" ] || [ "ReachabilityDeadlock" = "StableMarking" ] || [ "ReachabilityDeadlock" = "Liveness" ] || [ "ReachabilityDeadlock" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityDeadlock"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;