Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r161-tall-167838845800850.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-5348
Executing tool marcie
Input is GPPP-PT-C0100N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r161-tall-167838845800850
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 468K
-rw-r--r-- 1 mcc users 6.8K Feb 26 10:43 CTLCardinality.txt
-rw-r--r-- 1 mcc users 74K Feb 26 10:43 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.7K Feb 26 10:41 CTLFireability.txt
-rw-r--r-- 1 mcc users 30K Feb 26 10:41 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.4K Feb 25 16:10 LTLCardinality.txt
-rw-r--r-- 1 mcc users 22K Feb 25 16:10 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K Feb 25 16:10 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 16:10 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K Feb 26 10:44 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 128K Feb 26 10:44 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 12K Feb 26 10:44 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 76K Feb 26 10:44 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 16:10 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 16:10 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 17 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 1 Mar 5 18:22 large_marking
-rw-r--r-- 1 mcc users 21K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000100-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1679884404664

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marcie
BK_EXAMINATION=CTLFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=GPPP-PT-C0100N0000000100
Not applying reductions.
Model is PT
CTLFireability PT
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../marcie/bin/marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000000100
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 2.844sec


RS generation: 0m33.416sec


-> reachability set: #nodes 562750 (5.6e+05) #states 2,454,033,179,726,092 (15)



starting MCC model checker
--------------------------

checking: EF [AG [IS_FIREABLE [TIM_backward]]]
normalized: E [true U ~ [E [true U ~ [IS_FIREABLE [TIM_backward]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000000100-CTLFireability-04 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m24.426sec

checking: EF [IS_FIREABLE [Transaldolase]]
normalized: E [true U IS_FIREABLE [Transaldolase]]

-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000100-CTLFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 9.746sec

checking: EX [~ [IS_FIREABLE [Phosphofructokinase]]]
normalized: EX [~ [IS_FIREABLE [Phosphofructokinase]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000100-CTLFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m10.523sec

checking: EG [IS_FIREABLE [Aldolase]]
normalized: EG [IS_FIREABLE [Aldolase]]

..........................................................................................................................................................................................................MC time: 4m32.428sec

checking: EX [A [IS_FIREABLE [Transketolase1] U EF [AG [~ [IS_FIREABLE [TIM_backward]]]]]]
normalized: EX [[~ [EG [~ [E [true U ~ [E [true U IS_FIREABLE [TIM_backward]]]]]]] & ~ [E [~ [E [true U ~ [E [true U IS_FIREABLE [TIM_backward]]]]] U [~ [IS_FIREABLE [Transketolase1]] & ~ [E [true U ~ [E [true U IS_FIREABLE [TIM_backward]]]]]]]]]]

MC time: 4m10.000sec

checking: ~ [EF [A [IS_FIREABLE [Pyruvate_kinase] U AF [IS_FIREABLE [remove]]]]]
normalized: ~ [E [true U [~ [EG [EG [~ [IS_FIREABLE [remove]]]]] & ~ [E [EG [~ [IS_FIREABLE [remove]]] U [~ [IS_FIREABLE [Pyruvate_kinase]] & EG [~ [IS_FIREABLE [remove]]]]]]]]]


EG iterations: 0

EG iterations: 0

EG iterations: 0

EG iterations: 0
-> the formula is TRUE

FORMULA GPPP-PT-C0100N0000000100-CTLFireability-05 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m18.747sec

checking: A [EF [~ [IS_FIREABLE [generate]]] U EX [~ [AG [~ [IS_FIREABLE [Phosphofructokinase]]]]]]
normalized: [~ [EG [~ [EX [E [true U IS_FIREABLE [Phosphofructokinase]]]]]] & ~ [E [~ [EX [E [true U IS_FIREABLE [Phosphofructokinase]]]] U [~ [E [true U ~ [IS_FIREABLE [generate]]]] & ~ [EX [E [true U IS_FIREABLE [Phosphofructokinase]]]]]]]]


before gc: list nodes free: 613296

after gc: idd nodes used:1371126, unused:62628874; list nodes free:660768802
MC time: 4m 9.665sec

checking: [EX [~ [AF [[IS_FIREABLE [Hexokinase] & IS_FIREABLE [TIM_forward]]]]] | EG [IS_FIREABLE [Hexokinase]]]
normalized: [EG [IS_FIREABLE [Hexokinase]] | EX [EG [~ [[IS_FIREABLE [Hexokinase] & IS_FIREABLE [TIM_forward]]]]]]

.
EG iterations: 1
..............................................................................................................................................................MC time: 3m48.180sec

checking: [A [IS_FIREABLE [Ru5P_isomerase] U EF [[IS_FIREABLE [Transaldolase] & IS_FIREABLE [remove]]]] | AG [~ [AX [IS_FIREABLE [Pyruvate_kinase]]]]]
normalized: [~ [E [true U ~ [EX [~ [IS_FIREABLE [Pyruvate_kinase]]]]]] | [~ [EG [~ [E [true U [IS_FIREABLE [Transaldolase] & IS_FIREABLE [remove]]]]]] & ~ [E [~ [E [true U [IS_FIREABLE [Transaldolase] & IS_FIREABLE [remove]]]] U [~ [IS_FIREABLE [Ru5P_isomerase]] & ~ [E [true U [IS_FIREABLE [Transaldolase] & IS_FIREABLE [remove]]]]]]]]]


EG iterations: 0
.MC time: 3m29.004sec

checking: ~ [EG [[A [AX [A [IS_FIREABLE [Transaldolase] U IS_FIREABLE [Phosphoclucose_isomerase]]] U IS_FIREABLE [Enolase]] & AF [AF [AX [IS_FIREABLE [Lactate_dehydrogenase]]]]]]]
normalized: ~ [EG [[~ [EG [EG [EX [~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]] & [~ [EG [~ [IS_FIREABLE [Enolase]]]] & ~ [E [~ [IS_FIREABLE [Enolase]] U [EX [~ [[~ [EG [~ [IS_FIREABLE [Phosphoclucose_isomerase]]]] & ~ [E [~ [IS_FIREABLE [Phosphoclucose_isomerase]] U [~ [IS_FIREABLE [Transaldolase]] & ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]]]]] & ~ [IS_FIREABLE [Enolase]]]]]]]]]

......................................................................................MC time: 3m12.432sec

checking: AF [EX [~ [E [EF [IS_FIREABLE [generate]] U [~ [IS_FIREABLE [Aldolase]] & [IS_FIREABLE [TIM_backward] | IS_FIREABLE [Hexokinase]]]]]]]
normalized: ~ [EG [~ [EX [~ [E [E [true U IS_FIREABLE [generate]] U [[IS_FIREABLE [TIM_backward] | IS_FIREABLE [Hexokinase]] & ~ [IS_FIREABLE [Aldolase]]]]]]]]]


before gc: list nodes free: 1298226

after gc: idd nodes used:1486610, unused:62513390; list nodes free:684411803
.....................................................................................MC time: 2m55.016sec

checking: ~ [[AG [[AG [[[IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [TIM_backward]] & IS_FIREABLE [Transketolase1]]] & ~ [EG [IS_FIREABLE [Enolase]]]]] | AX [IS_FIREABLE [Ru5P_isomerase]]]]
normalized: ~ [[~ [EX [~ [IS_FIREABLE [Ru5P_isomerase]]]] | ~ [E [true U ~ [[~ [EG [IS_FIREABLE [Enolase]]] & ~ [E [true U ~ [[IS_FIREABLE [Transketolase1] & [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [TIM_backward]]]]]]]]]]]]

............................................................................................................................................MC time: 2m41.100sec

checking: EG [[AX [E [[AG [IS_FIREABLE [Phosphoclucose_isomerase]] | AF [IS_FIREABLE [remove]]] U [[IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Phosphoclucose_isomerase]] | AG [IS_FIREABLE [Glutathione_oxidation]]]]] | ~ [EF [EX [EG [IS_FIREABLE [Enolase]]]]]]]
normalized: EG [[~ [E [true U EX [EG [IS_FIREABLE [Enolase]]]]] | ~ [EX [~ [E [[~ [EG [~ [IS_FIREABLE [remove]]]] | ~ [E [true U ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]] U [~ [E [true U ~ [IS_FIREABLE [Glutathione_oxidation]]]] | [IS_FIREABLE [Phosphoclucose_isomerase] & IS_FIREABLE [Phosphoclucose_isomerase]]]]]]]]]


EG iterations: 0
.....................................................................................................................................................................MC time: 2m27.264sec

checking: AX [[EF [[[E [IS_FIREABLE [G6P_dehydrogenase] U IS_FIREABLE [G6P_dehydrogenase]] & EG [IS_FIREABLE [G6P_dehydrogenase]]] | AF [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]]] & ~ [IS_FIREABLE [Phosphoclucose_isomerase]]]]
normalized: ~ [EX [~ [[~ [IS_FIREABLE [Phosphoclucose_isomerase]] & E [true U [~ [EG [~ [[IS_FIREABLE [Ru5P_isomerase] & IS_FIREABLE [Ru5P_epimerase]]]]] | [EG [IS_FIREABLE [G6P_dehydrogenase]] & E [IS_FIREABLE [G6P_dehydrogenase] U IS_FIREABLE [G6P_dehydrogenase]]]]]]]]]

............................................................................................................................MC time: 2m15.179sec

checking: EX [[AF [[[[~ [IS_FIREABLE [G6P_dehydrogenase]] & ~ [IS_FIREABLE [GAP_dehydrogenase]]] & A [IS_FIREABLE [Glutathione_oxidation] U IS_FIREABLE [G6P_dehydrogenase]]] & [~ [IS_FIREABLE [Glutathione_reductose]] & [IS_FIREABLE [Glutathione_oxidation] | A [IS_FIREABLE [G6P_dehydrogenase] U IS_FIREABLE [TIM_forward]]]]]] | IS_FIREABLE [Transaldolase]]]
normalized: EX [[IS_FIREABLE [Transaldolase] | ~ [EG [~ [[[[IS_FIREABLE [Glutathione_oxidation] | [~ [EG [~ [IS_FIREABLE [TIM_forward]]]] & ~ [E [~ [IS_FIREABLE [TIM_forward]] U [~ [IS_FIREABLE [G6P_dehydrogenase]] & ~ [IS_FIREABLE [TIM_forward]]]]]]] & ~ [IS_FIREABLE [Glutathione_reductose]]] & [[~ [EG [~ [IS_FIREABLE [G6P_dehydrogenase]]]] & ~ [E [~ [IS_FIREABLE [G6P_dehydrogenase]] U [~ [IS_FIREABLE [Glutathione_oxidation]] & ~ [IS_FIREABLE [G6P_dehydrogenase]]]]]] & [~ [IS_FIREABLE [GAP_dehydrogenase]] & ~ [IS_FIREABLE [G6P_dehydrogenase]]]]]]]]]]

TIME LIMIT: Killed by timeout after 3600 seconds
MemTotal: 16393916 kB
MemFree: 170308 kB
After kill :
MemTotal: 16393916 kB
MemFree: 15996232 kB

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:11981 (544), effective:2887 (131)

initing FirstDep: 0m 0.000sec


iterations count:125 (5), effective:15 (0)

iterations count:106 (4), effective:13 (0)

ctl_mc.icc:221: Timeout: after 270 sec


sat_reach.icc:155: Timeout: after 249 sec


iterations count:62 (2), effective:10 (0)

sat_reach.icc:155: Timeout: after 248 sec


net_ddint.h:600: Timeout: after 227 sec


iterations count:25 (1), effective:1 (0)

sat_reach.icc:155: Timeout: after 208 sec


iterations count:25 (1), effective:1 (0)

net_ddint.h:600: Timeout: after 190 sec


iterations count:22 (1), effective:0 (0)

iterations count:26 (1), effective:1 (0)

net_ddint.h:600: Timeout: after 174 sec


iterations count:117 (5), effective:14 (0)

net_ddint.h:600: Timeout: after 160 sec


iterations count:222 (10), effective:100 (4)

iterations count:34 (1), effective:1 (0)

iterations count:22 (1), effective:0 (0)

net_ddint.h:600: Timeout: after 146 sec


iterations count:22 (1), effective:0 (0)

net_ddint.h:600: Timeout: after 134 sec


iterations count:222 (10), effective:100 (4)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0100N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r161-tall-167838845800850"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000000100.tgz
mv GPPP-PT-C0100N0000000100 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;