Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r161-tall-167838845700794.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-5348
Executing tool marcie
Input is GPPP-PT-C0001N0000001000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r161-tall-167838845700794
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 580K
-rw-r--r-- 1 mcc users 9.4K Feb 26 10:40 CTLCardinality.txt
-rw-r--r-- 1 mcc users 110K Feb 26 10:40 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.9K Feb 26 10:39 CTLFireability.txt
-rw-r--r-- 1 mcc users 52K Feb 26 10:39 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.5K Feb 25 16:10 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 16:10 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K Feb 25 16:10 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 16:10 LTLFireability.xml
-rw-r--r-- 1 mcc users 11K Feb 26 10:41 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 112K Feb 26 10:41 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 19K Feb 26 10:41 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 134K Feb 26 10:41 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 16:10 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 16:10 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 17 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 1 Mar 5 18:22 large_marking
-rw-r--r-- 1 mcc users 21K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-00
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-01
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-02
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-03
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-04
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-05
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-06
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-07
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-08
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-09
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000001000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1679883122657

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marcie
BK_EXAMINATION=CTLFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=GPPP-PT-C0001N0000001000
Not applying reductions.
Model is PT
CTLFireability PT
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../marcie/bin/marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: GPPP_PT_C0001N0000001000
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 2.815sec


RS generation: 0m 5.946sec


-> reachability set: #nodes 4058 (4.1e+03) #states 14,353,505,166 (10)



starting MCC model checker
--------------------------

checking: EG [~ [AG [AG [[~ [IS_FIREABLE [Transaldolase]] & IS_FIREABLE [generate]]]]]]
normalized: EG [E [true U E [true U ~ [[~ [IS_FIREABLE [Transaldolase]] & IS_FIREABLE [generate]]]]]]


EG iterations: 0
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000001000-CTLFireability-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.040sec

checking: [E [IS_FIREABLE [Phosphoclucose_isomerase] U IS_FIREABLE [TIM_forward]] | AF [EG [~ [AF [~ [IS_FIREABLE [TIM_forward]]]]]]]
normalized: [~ [EG [~ [EG [EG [IS_FIREABLE [TIM_forward]]]]]] | E [IS_FIREABLE [Phosphoclucose_isomerase] U IS_FIREABLE [TIM_forward]]]

.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MC time: 4m 0.022sec

checking: ~ [E [E [[~ [IS_FIREABLE [GAP_dehydrogenase]] | EX [IS_FIREABLE [Phosphofructokinase]]] U IS_FIREABLE [generate]] U IS_FIREABLE [TIM_forward]]]
normalized: ~ [E [E [[EX [IS_FIREABLE [Phosphofructokinase]] | ~ [IS_FIREABLE [GAP_dehydrogenase]]] U IS_FIREABLE [generate]] U IS_FIREABLE [TIM_forward]]]

.-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000001000-CTLFireability-01 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m 0.338sec

checking: AX [[[IS_FIREABLE [Enolase] | AG [A [IS_FIREABLE [generate] U IS_FIREABLE [Lactate_dehydrogenase]]]] & IS_FIREABLE [Ru5P_epimerase]]]
normalized: ~ [EX [~ [[IS_FIREABLE [Ru5P_epimerase] & [IS_FIREABLE [Enolase] | ~ [E [true U ~ [[~ [EG [~ [IS_FIREABLE [Lactate_dehydrogenase]]]] & ~ [E [~ [IS_FIREABLE [Lactate_dehydrogenase]] U [~ [IS_FIREABLE [generate]] & ~ [IS_FIREABLE [Lactate_dehydrogenase]]]]]]]]]]]]]]

.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MC time: 4m 0.018sec

checking: [[EG [IS_FIREABLE [Ru5P_epimerase]] | ~ [AF [AF [IS_FIREABLE [Ru5P_epimerase]]]]] | ~ [EG [AF [E [EG [IS_FIREABLE [Glutathione_reductose]] U ~ [IS_FIREABLE [Aldolase]]]]]]]
normalized: [~ [EG [~ [EG [~ [E [EG [IS_FIREABLE [Glutathione_reductose]] U ~ [IS_FIREABLE [Aldolase]]]]]]]] | [EG [EG [~ [IS_FIREABLE [Ru5P_epimerase]]]] | EG [IS_FIREABLE [Ru5P_epimerase]]]]

......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MC time: 3m43.005sec

checking: AG [EG [~ [[[~ [EX [IS_FIREABLE [Ru5P_isomerase]]] & E [IS_FIREABLE [Ru5P_isomerase] U IS_FIREABLE [Ru5P_epimerase]]] & A [IS_FIREABLE [Transaldolase] U EG [IS_FIREABLE [remove]]]]]]]
normalized: ~ [E [true U ~ [EG [~ [[[~ [EG [~ [EG [IS_FIREABLE [remove]]]]] & ~ [E [~ [EG [IS_FIREABLE [remove]]] U [~ [IS_FIREABLE [Transaldolase]] & ~ [EG [IS_FIREABLE [remove]]]]]]] & [E [IS_FIREABLE [Ru5P_isomerase] U IS_FIREABLE [Ru5P_epimerase]] & ~ [EX [IS_FIREABLE [Ru5P_isomerase]]]]]]]]]]

...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 5002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 5002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
EG iterations: 5002

EG iterations: 0

EG iterations: 0
-> the formula is TRUE

FORMULA GPPP-PT-C0001N0000001000-CTLFireability-06 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m 0.517sec

checking: EF [~ [A [IS_FIREABLE [Glutathione_oxidation] U A [[EX [IS_FIREABLE [Ru5P_isomerase]] | EX [IS_FIREABLE [GAP_dehydrogenase]]] U [EX [IS_FIREABLE [Hexokinase]] | [IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]]]]]]]
normalized: E [true U ~ [[~ [EG [~ [[~ [EG [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]] & ~ [E [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]] U [~ [[EX [IS_FIREABLE [GAP_dehydrogenase]] | EX [IS_FIREABLE [Ru5P_isomerase]]]] & ~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]]]]]]] & ~ [E [~ [[~ [EG [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]] & ~ [E [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]] U [~ [[EX [IS_FIREABLE [GAP_dehydrogenase]] | EX [IS_FIREABLE [Ru5P_isomerase]]]] & ~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]]]]] U [~ [IS_FIREABLE [Glutathione_oxidation]] & ~ [[~ [EG [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]] & ~ [E [~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]] U [~ [[EX [IS_FIREABLE [GAP_dehydrogenase]] | EX [IS_FIREABLE [Ru5P_isomerase]]]] & ~ [[[IS_FIREABLE [G6P_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]] | EX [IS_FIREABLE [Hexokinase]]]]]]]]]]]]]]]

...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
before gc: list nodes free: 1931828

after gc: idd nodes used:48362, unused:63951638; list nodes free:835959703
MC time: 12m10.037sec

checking: [AF [[E [IS_FIREABLE [TIM_forward] U [~ [[IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [Glutathione_reductose]]] | AG [IS_FIREABLE [Lactate_dehydrogenase]]]] & IS_FIREABLE [Pyruvate_kinase]]] & AG [EX [AX [IS_FIREABLE [TIM_backward]]]]]
normalized: [~ [E [true U ~ [EX [~ [EX [~ [IS_FIREABLE [TIM_backward]]]]]]]] & ~ [EG [~ [[IS_FIREABLE [Pyruvate_kinase] & E [IS_FIREABLE [TIM_forward] U [~ [E [true U ~ [IS_FIREABLE [Lactate_dehydrogenase]]]] | ~ [[IS_FIREABLE [GAP_dehydrogenase] | IS_FIREABLE [Glutathione_reductose]]]]]]]]]]


BK_STOP 1679884892778

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec

2060
iterations count:155740 (7079), effective:36555 (1661)

initing FirstDep: 0m 0.000sec


iterations count:26 (1), effective:1 (0)

iterations count:22 (1), effective:0 (0)

iterations count:22 (1), effective:0 (0)

net_ddint.h:600: Timeout: after 239 sec


iterations count:110 (5), effective:36 (1)

iterations count:22 (1), effective:0 (0)

iterations count:26 (1), effective:1 (0)

ctl_mc.icc:221: Timeout: after 239 sec


net_ddint.h:600: Timeout: after 222 sec


iterations count:51 (2), effective:7 (0)

iterations count:25 (1), effective:1 (0)

iterations count:226 (10), effective:53 (2)

net_ddint.h:600: Timeout: after 208 sec


iterations count:29 (1), effective:7 (0)

iterations count:2070 (94), effective:1006 (45)
/home/mcc/BenchKit/bin//../marcie/bin//../BenchKit_head.sh: line 16: 337 Killed ${MARCIE} --net-file=model.pnml --mcc-file=${BK_EXAMINATION}.xml ${MARCIE_CONFIG}

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000001000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0001N0000001000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r161-tall-167838845700794"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000001000.tgz
mv GPPP-PT-C0001N0000001000 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;