Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r138-smll-167819420100262.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool marciexred
Input is Diffusion2D-PT-D50N050, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r138-smll-167819420100262
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.8M
-rw-r--r-- 1 mcc users 7.8K Feb 26 04:10 CTLCardinality.txt
-rw-r--r-- 1 mcc users 74K Feb 26 04:10 CTLCardinality.xml
-rw-r--r-- 1 mcc users 7.4K Feb 26 04:08 CTLFireability.txt
-rw-r--r-- 1 mcc users 62K Feb 26 04:08 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.3K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.1K Feb 25 15:59 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:59 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Feb 25 15:59 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:59 LTLFireability.xml
-rw-r--r-- 1 mcc users 8.8K Feb 26 04:11 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 70K Feb 26 04:11 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 12K Feb 26 04:11 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 83K Feb 26 04:11 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 25 15:59 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:59 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-00
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-01
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-02
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-03
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-04
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-05
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-06
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-07
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-08
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-09
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-10
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-11
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-12
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-13
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-14
FORMULA_NAME Diffusion2D-PT-D50N050-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678712023239

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marciexred
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Diffusion2D-PT-D50N050
Applying reductions before tool marcie
Invoking reducer
Running Version 202303021504
[2023-03-13 12:53:46] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -timeout, 360, -rebuildPNML]
[2023-03-13 12:53:46] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-13 12:53:47] [INFO ] Load time of PNML (sax parser for PT used): 865 ms
[2023-03-13 12:53:47] [INFO ] Transformed 2500 places.
[2023-03-13 12:53:47] [INFO ] Transformed 19404 transitions.
[2023-03-13 12:53:47] [INFO ] Parsed PT model containing 2500 places and 19404 transitions and 38808 arcs in 1101 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 38 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10021 steps, including 2 resets, run finished after 149 ms. (steps per millisecond=67 ) properties (out of 16) seen :1
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-07 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 27 ms. (steps per millisecond=37 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 15 ms. (steps per millisecond=66 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 14 ms. (steps per millisecond=71 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=77 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=50 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 10 ms. (steps per millisecond=100 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=111 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=125 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=143 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 10 ms. (steps per millisecond=100 ) properties (out of 15) seen :0
Interrupted probabilistic random walk after 94037 steps, run timeout after 3004 ms. (steps per millisecond=31 ) properties seen :{}
Probabilistic random walk after 94037 steps, saw 78483 distinct states, run finished after 3008 ms. (steps per millisecond=31 ) properties seen :0
Running SMT prover for 15 properties.
// Phase 1: matrix 19404 rows 2500 cols
[2023-03-13 12:53:51] [INFO ] Computed 1 place invariants in 293 ms
[2023-03-13 12:53:54] [INFO ] After 1943ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:15
[2023-03-13 12:53:55] [INFO ] [Nat]Absence check using 1 positive place invariants in 27 ms returned sat
[2023-03-13 12:54:19] [INFO ] After 22578ms SMT Verify possible using state equation in natural domain returned unsat :1 sat :13
[2023-03-13 12:54:19] [INFO ] After 22611ms SMT Verify possible using trap constraints in natural domain returned unsat :1 sat :13
Attempting to minimize the solution found.
Minimization took 7 ms.
[2023-03-13 12:54:19] [INFO ] After 25115ms SMT Verify possible using all constraints in natural domain returned unsat :1 sat :13
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-05 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 15 Parikh solutions to 2 different solutions.
Parikh walk visited 0 properties in 2013 ms.
Support contains 160 out of 2500 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 2500/2500 places, 19404/19404 transitions.
Graph (trivial) has 16982 edges and 2500 vertex of which 2340 / 2500 are part of one of the 1 SCC in 36 ms
Free SCC test removed 2339 places
Drop transitions removed 16982 transitions
Ensure Unique test removed 2012 transitions
Reduce isomorphic transitions removed 18994 transitions.
Drop transitions removed 116 transitions
Redundant transition composition rules discarded 116 transitions
Iterating global reduction 0 with 116 rules applied. Total rules applied 117 place count 161 transition count 294
Applied a total of 117 rules in 181 ms. Remains 161 /2500 variables (removed 2339) and now considering 294/19404 (removed 19110) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 183 ms. Remains : 161/2500 places, 294/19404 transitions.
Incomplete random walk after 10013 steps, including 2 resets, run finished after 41 ms. (steps per millisecond=244 ) properties (out of 14) seen :9
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-14 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-13 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-06 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-04 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-02 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=434 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=909 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=1111 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=769 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=1250 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
// Phase 1: matrix 294 rows 161 cols
[2023-03-13 12:54:21] [INFO ] Computed 1 place invariants in 5 ms
[2023-03-13 12:54:21] [INFO ] After 98ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2023-03-13 12:54:21] [INFO ] [Nat]Absence check using 1 positive place invariants in 2 ms returned sat
[2023-03-13 12:54:21] [INFO ] After 189ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :5
[2023-03-13 12:54:22] [INFO ] After 327ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 93 ms.
[2023-03-13 12:54:22] [INFO ] After 521ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :5
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-00 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-03 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-09 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-11 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Finished Parikh walk after 67 steps, including 0 resets, run visited all 1 properties in 2 ms. (steps per millisecond=33 )
FORMULA Diffusion2D-PT-D50N050-ReachabilityCardinality-12 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 5 properties in 12 ms.
All properties solved without resorting to model-checking.
Total runtime 35572 ms.
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../reducer/bin//../../marcie/bin/marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: Diffusion2D_PT_D50N050
(NrP: 2500 NrTr: 19404 NrArc: 38808)

parse formulas
formulas created successfully
place and transition orderings generation:0m 4.354sec

net check time: 0m 0.011sec

init dd package: 0m 3.378sec

TIME LIMIT: Killed by timeout after 3600 seconds
MemTotal: 16393216 kB
MemFree: 9483084 kB
After kill :
MemTotal: 16393216 kB
MemFree: 16091916 kB

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -timeout 360 -rebuildPNML
check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 2.112sec

3848 3848 3848 3848 3848 3848 6307 6041 5840 5667 5512 5368 5199 8460 8014 7646 7318 7020 6742 11171 10394 9794 9281 8813 8384 14560 13020 12136 11408 10756 10164 9608

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N050"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marciexred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marciexred"
echo " Input is Diffusion2D-PT-D50N050, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r138-smll-167819420100262"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N050.tgz
mv Diffusion2D-PT-D50N050 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;