Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r133-smll-167819410600278.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Diffusion2D-PT-D50N150, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r133-smll-167819410600278
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 7.8M
-rw-r--r-- 1 mcc users 11K Feb 26 04:30 CTLCardinality.txt
-rw-r--r-- 1 mcc users 105K Feb 26 04:30 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.1K Feb 26 04:29 CTLFireability.txt
-rw-r--r-- 1 mcc users 48K Feb 26 04:29 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.3K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:59 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 15:59 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Feb 25 15:59 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 15:59 LTLFireability.xml
-rw-r--r-- 1 mcc users 11K Feb 26 04:31 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 88K Feb 26 04:31 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.3K Feb 26 04:31 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 54K Feb 26 04:31 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 25 15:59 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:59 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 7.3M Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-00
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-01
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-02
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-03
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-04
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-05
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-06
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-07
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-08
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-09
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-10
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-11
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-12
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-13
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-14
FORMULA_NAME Diffusion2D-PT-D50N150-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678410434191

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Diffusion2D-PT-D50N150
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-10 01:07:16] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-10 01:07:16] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-10 01:07:17] [INFO ] Load time of PNML (sax parser for PT used): 681 ms
[2023-03-10 01:07:17] [INFO ] Transformed 2500 places.
[2023-03-10 01:07:17] [INFO ] Transformed 19404 transitions.
[2023-03-10 01:07:17] [INFO ] Parsed PT model containing 2500 places and 19404 transitions and 38808 arcs in 949 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 37 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10119 steps, including 2 resets, run finished after 90 ms. (steps per millisecond=112 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=43 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 16 ms. (steps per millisecond=62 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1000 steps, including 2 resets, run finished after 19 ms. (steps per millisecond=52 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 14 ms. (steps per millisecond=71 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 21 ms. (steps per millisecond=47 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 16 ms. (steps per millisecond=62 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 16 ms. (steps per millisecond=62 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=50 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 42 ms. (steps per millisecond=23 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 19 ms. (steps per millisecond=52 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1000 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=76 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 37 ms. (steps per millisecond=27 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 27 ms. (steps per millisecond=37 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 18 ms. (steps per millisecond=55 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 16) seen :0
[2023-03-10 01:07:19] [INFO ] Flatten gal took : 1455 ms
[2023-03-10 01:07:20] [INFO ] Flatten gal took : 896 ms
[2023-03-10 01:07:21] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality4957239447176298813.gal : 404 ms
[2023-03-10 01:07:21] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality7004416110536983105.prop : 4 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality4957239447176298813.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality7004416110536983105.prop' '--nowitness' '--gen-order' 'FOLLOW'
Interrupted probabilistic random walk after 43851 steps, run timeout after 3001 ms. (steps per millisecond=14 ) properties seen :{}
Probabilistic random walk after 43851 steps, saw 35935 distinct states, run finished after 3003 ms. (steps per millisecond=14 ) properties seen :0

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...328
Running SMT prover for 16 properties.
// Phase 1: matrix 19404 rows 2500 cols
[2023-03-10 01:07:21] [INFO ] Computed 1 place invariants in 214 ms
Loading property file /tmp/ReachabilityCardinality7004416110536983105.prop.
[2023-03-10 01:07:23] [INFO ] After 1847ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:16
[2023-03-10 01:07:25] [INFO ] [Nat]Absence check using 1 positive place invariants in 30 ms returned sat
[2023-03-10 01:07:48] [INFO ] After 22880ms SMT Verify possible using state equation in natural domain returned unsat :1 sat :13
[2023-03-10 01:07:49] [INFO ] After 22915ms SMT Verify possible using trap constraints in natural domain returned unsat :1 sat :13
Attempting to minimize the solution found.
Minimization took 8 ms.
[2023-03-10 01:07:49] [INFO ] After 25091ms SMT Verify possible using all constraints in natural domain returned unsat :1 sat :13
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-07 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 16 Parikh solutions to 3 different solutions.
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-01 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 2 properties in 4039 ms.
Support contains 168 out of 2500 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 2500/2500 places, 19404/19404 transitions.
Graph (trivial) has 16886 edges and 2500 vertex of which 2332 / 2500 are part of one of the 1 SCC in 38 ms
Free SCC test removed 2331 places
Drop transitions removed 16886 transitions
Ensure Unique test removed 2112 transitions
Reduce isomorphic transitions removed 18998 transitions.
Drop transitions removed 94 transitions
Redundant transition composition rules discarded 94 transitions
Iterating global reduction 0 with 94 rules applied. Total rules applied 95 place count 169 transition count 312
Applied a total of 95 rules in 216 ms. Remains 169 /2500 variables (removed 2331) and now considering 312/19404 (removed 19092) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 218 ms. Remains : 169/2500 places, 312/19404 transitions.
Incomplete random walk after 10130 steps, including 2 resets, run finished after 12 ms. (steps per millisecond=844 ) properties (out of 13) seen :3
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-04 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=769 ) properties (out of 10) seen :2
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-02 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-00 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=1250 ) properties (out of 8) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=909 ) properties (out of 8) seen :2
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-12 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-06 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=1250 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 10 ms. (steps per millisecond=1000 ) properties (out of 6) seen :1
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-09 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 5 ms. (steps per millisecond=2000 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 5 ms. (steps per millisecond=2000 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 5 ms. (steps per millisecond=2000 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
// Phase 1: matrix 312 rows 169 cols
[2023-03-10 01:07:53] [INFO ] Computed 1 place invariants in 11 ms
[2023-03-10 01:07:53] [INFO ] [Real]Absence check using 1 positive place invariants in 2 ms returned sat
[2023-03-10 01:07:53] [INFO ] After 165ms SMT Verify possible using state equation in real domain returned unsat :0 sat :5
[2023-03-10 01:07:53] [INFO ] After 282ms SMT Verify possible using trap constraints in real domain returned unsat :0 sat :5
Attempting to minimize the solution found.
Minimization took 80 ms.
[2023-03-10 01:07:53] [INFO ] After 475ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :5
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-05 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-08 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-11 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-14 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Finished Parikh walk after 116 steps, including 0 resets, run visited all 1 properties in 1 ms. (steps per millisecond=116 )
FORMULA Diffusion2D-PT-D50N150-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 5 properties in 42 ms.
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
All properties solved without resorting to model-checking.
Total runtime 37223 ms.

BK_STOP 1678410475246

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N150"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D50N150, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r133-smll-167819410600278"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N150.tgz
mv Diffusion2D-PT-D50N150 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;