Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r133-smll-167819410500238.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Diffusion2D-PT-D40N100, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r133-smll-167819410500238
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 5.1M
-rw-r--r-- 1 mcc users 7.0K Feb 26 04:20 CTLCardinality.txt
-rw-r--r-- 1 mcc users 63K Feb 26 04:20 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.9K Feb 26 04:19 CTLFireability.txt
-rw-r--r-- 1 mcc users 43K Feb 26 04:19 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.3K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:58 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:58 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Feb 25 15:58 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 15:58 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K Feb 26 04:21 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 112K Feb 26 04:21 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 10K Feb 26 04:21 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 69K Feb 26 04:21 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 25 15:58 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:58 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 4.7M Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-00
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-01
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-02
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-03
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-04
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-05
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-06
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-07
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-08
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-09
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-10
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-11
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-12
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-13
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-14
FORMULA_NAME Diffusion2D-PT-D40N100-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678375317782

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Diffusion2D-PT-D40N100
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-09 15:22:01] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-09 15:22:01] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-09 15:22:01] [INFO ] Load time of PNML (sax parser for PT used): 513 ms
[2023-03-09 15:22:01] [INFO ] Transformed 1600 places.
[2023-03-09 15:22:01] [INFO ] Transformed 12324 transitions.
[2023-03-09 15:22:01] [INFO ] Parsed PT model containing 1600 places and 12324 transitions and 24648 arcs in 699 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 25 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10001 steps, including 2 resets, run finished after 129 ms. (steps per millisecond=77 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 27 ms. (steps per millisecond=37 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 19 ms. (steps per millisecond=52 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=50 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 20 ms. (steps per millisecond=50 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 24 ms. (steps per millisecond=41 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=125 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=111 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 13 ms. (steps per millisecond=77 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=111 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 14 ms. (steps per millisecond=71 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 6 ms. (steps per millisecond=166 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 18 ms. (steps per millisecond=55 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=143 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 29 ms. (steps per millisecond=34 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=143 ) properties (out of 16) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 16) seen :0
[2023-03-09 15:22:03] [INFO ] Flatten gal took : 1226 ms
[2023-03-09 15:22:04] [INFO ] Flatten gal took : 607 ms
[2023-03-09 15:22:04] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3932431454372690940.gal : 196 ms
[2023-03-09 15:22:04] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality17210998507113453634.prop : 3 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality3932431454372690940.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality17210998507113453634.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Interrupted probabilistic random walk after 68762 steps, run timeout after 3001 ms. (steps per millisecond=22 ) properties seen :{7=1, 15=1}
Probabilistic random walk after 68762 steps, saw 56888 distinct states, run finished after 3003 ms. (steps per millisecond=22 ) properties seen :2
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-07 FALSE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
Running SMT prover for 14 properties.
// Phase 1: matrix 12324 rows 1600 cols
[2023-03-09 15:22:05] [INFO ] Computed 1 place invariants in 255 ms
Loading property file /tmp/ReachabilityCardinality17210998507113453634.prop.
[2023-03-09 15:22:07] [INFO ] After 1115ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:14
[2023-03-09 15:22:08] [INFO ] [Nat]Absence check using 1 positive place invariants in 20 ms returned sat
[2023-03-09 15:22:25] [INFO ] After 17375ms SMT Verify possible using state equation in natural domain returned unsat :1 sat :13
SDD proceeding with computation,16 properties remain. new max is 4
SDD size :1 after 17
SDD proceeding with computation,16 properties remain. new max is 8
SDD size :17 after 36
SDD proceeding with computation,16 properties remain. new max is 16
SDD size :36 after 63
SDD proceeding with computation,16 properties remain. new max is 32
SDD size :63 after 81
SDD proceeding with computation,16 properties remain. new max is 64
SDD size :81 after 111
Invariant property Diffusion2D-PT-D40N100-ReachabilityCardinality-15 does not hold.
SDD proceeding with computation,15 properties remain. new max is 64
SDD size :111 after 173
SDD proceeding with computation,15 properties remain. new max is 128
SDD size :173 after 235
SDD proceeding with computation,15 properties remain. new max is 256
SDD size :235 after 355
SDD proceeding with computation,15 properties remain. new max is 512
SDD size :355 after 589
[2023-03-09 15:22:33] [INFO ] Deduced a trap composed of 1600 places in 1353 ms of which 9 ms to minimize.
java.lang.RuntimeException: SMT solver raised an error when submitting script. Raised (error "Failed to assert expression: java.io.IOException: Stream close...
at fr.lip6.move.gal.structural.smt.SMTUtils.execAndCheckResult(SMTUtils.java:251)
at fr.lip6.move.gal.structural.smt.DeadlockTester.refineWithTraps(DeadlockTester.java:1255)
at fr.lip6.move.gal.structural.smt.DeadlockTester.refineResultsWithTraps(DeadlockTester.java:736)
at fr.lip6.move.gal.structural.smt.DeadlockTester.verifyPossible(DeadlockTester.java:656)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMTIncremental(DeadlockTester.java:350)
at fr.lip6.move.gal.structural.smt.DeadlockTester.testUnreachableWithSMT(DeadlockTester.java:223)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.applyReductions(ReachabilitySolver.java:95)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:902)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
[2023-03-09 15:22:33] [WARNING] SMT solver failed with error :SMT solver raised an error when submitting script.... while checking expressions.
[2023-03-09 15:22:33] [INFO ] After 26380ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :0 real:14
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-08 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 14 Parikh solutions to 13 different solutions.
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-00 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-01 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-02 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Invariant property Diffusion2D-PT-D40N100-ReachabilityCardinality-10 does not hold.
Invariant property Diffusion2D-PT-D40N100-ReachabilityCardinality-07 does not hold.
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-03 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Reachability property Diffusion2D-PT-D40N100-ReachabilityCardinality-04 is true.
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
SDD proceeding with computation,12 properties remain. new max is 512
SDD size :589 after 45200
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-05 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-06 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-09 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-11 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-12 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-13 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Finished Parikh walk after 5623 steps, including 0 resets, run visited all 1 properties in 67 ms. (steps per millisecond=83 )
FORMULA Diffusion2D-PT-D40N100-ReachabilityCardinality-14 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 13 properties in 13216 ms.
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
All properties solved without resorting to model-checking.
Total runtime 45773 ms.

BK_STOP 1678375368158

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D40N100"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D40N100, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r133-smll-167819410500238"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D40N100.tgz
mv Diffusion2D-PT-D40N100 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;