Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r133-smll-167819410400198.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Diffusion2D-PT-D30N050, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r133-smll-167819410400198
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 3.5M
-rw-r--r-- 1 mcc users 8.6K Feb 26 04:27 CTLCardinality.txt
-rw-r--r-- 1 mcc users 80K Feb 26 04:27 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.1K Feb 26 04:25 CTLFireability.txt
-rw-r--r-- 1 mcc users 35K Feb 26 04:25 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.3K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.4K Feb 25 15:58 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:58 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K Feb 25 15:58 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 15:58 LTLFireability.xml
-rw-r--r-- 1 mcc users 15K Feb 26 04:28 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 133K Feb 26 04:28 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 12K Feb 26 04:27 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 85K Feb 26 04:27 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 25 15:58 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:58 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 8 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 3.0M Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-00
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-01
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-02
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-03
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-04
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-05
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-06
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-07
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-08
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-09
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-10
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-11
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-12
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-13
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-14
FORMULA_NAME Diffusion2D-PT-D30N050-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678343788725

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Diffusion2D-PT-D30N050
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-09 06:36:31] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-09 06:36:31] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-09 06:36:32] [INFO ] Load time of PNML (sax parser for PT used): 662 ms
[2023-03-09 06:36:32] [INFO ] Transformed 900 places.
[2023-03-09 06:36:32] [INFO ] Transformed 6844 transitions.
[2023-03-09 06:36:32] [INFO ] Parsed PT model containing 900 places and 6844 transitions and 13688 arcs in 805 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 33 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10047 steps, including 2 resets, run finished after 259 ms. (steps per millisecond=38 ) properties (out of 16) seen :1
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 58 ms. (steps per millisecond=17 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 39 ms. (steps per millisecond=25 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 24 ms. (steps per millisecond=41 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 32 ms. (steps per millisecond=31 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=91 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 38 ms. (steps per millisecond=26 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 17 ms. (steps per millisecond=58 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 37 ms. (steps per millisecond=27 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 32 ms. (steps per millisecond=31 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 32 ms. (steps per millisecond=31 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 26 ms. (steps per millisecond=38 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 22 ms. (steps per millisecond=45 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 38 ms. (steps per millisecond=26 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 21 ms. (steps per millisecond=47 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=111 ) properties (out of 15) seen :0
[2023-03-09 06:36:34] [INFO ] Flatten gal took : 833 ms
[2023-03-09 06:36:35] [INFO ] Flatten gal took : 536 ms
[2023-03-09 06:36:35] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality8474868263029592113.gal : 210 ms
[2023-03-09 06:36:35] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality11052548247201734957.prop : 2 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality8474868263029592113.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality11052548247201734957.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality11052548247201734957.prop.
Interrupted probabilistic random walk after 62522 steps, run timeout after 3001 ms. (steps per millisecond=20 ) properties seen :{13=1, 14=1}
Probabilistic random walk after 62522 steps, saw 51332 distinct states, run finished after 3003 ms. (steps per millisecond=20 ) properties seen :2
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-14 TRUE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
Running SMT prover for 13 properties.
// Phase 1: matrix 6844 rows 900 cols
[2023-03-09 06:36:36] [INFO ] Computed 1 place invariants in 71 ms
[2023-03-09 06:36:37] [INFO ] After 844ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:13
[2023-03-09 06:36:38] [INFO ] [Nat]Absence check using 1 positive place invariants in 12 ms returned sat
SDD proceeding with computation,15 properties remain. new max is 4
SDD size :1 after 17
SDD proceeding with computation,15 properties remain. new max is 8
SDD size :17 after 32
Invariant property Diffusion2D-PT-D30N050-ReachabilityCardinality-11 does not hold.
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
SDD proceeding with computation,14 properties remain. new max is 8
SDD size :32 after 52
SDD proceeding with computation,14 properties remain. new max is 16
SDD size :52 after 59
SDD proceeding with computation,14 properties remain. new max is 32
SDD size :59 after 76
SDD proceeding with computation,14 properties remain. new max is 64
SDD size :76 after 104
SDD proceeding with computation,14 properties remain. new max is 128
SDD size :104 after 150
Invariant property Diffusion2D-PT-D30N050-ReachabilityCardinality-06 does not hold.
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
SDD proceeding with computation,13 properties remain. new max is 128
SDD size :150 after 266
Invariant property Diffusion2D-PT-D30N050-ReachabilityCardinality-04 does not hold.
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
SDD proceeding with computation,12 properties remain. new max is 128
SDD size :266 after 381
SDD proceeding with computation,12 properties remain. new max is 256
SDD size :381 after 13080
SDD proceeding with computation,12 properties remain. new max is 512
SDD size :13080 after 22507
[2023-03-09 06:36:45] [INFO ] After 7061ms SMT Verify possible using state equation in natural domain returned unsat :2 sat :11
SDD proceeding with computation,12 properties remain. new max is 1024
SDD size :22507 after 80612
[2023-03-09 06:36:50] [INFO ] After 12171ms SMT Verify possible using trap constraints in natural domain returned unsat :2 sat :11
Attempting to minimize the solution found.
Minimization took 4991 ms.
[2023-03-09 06:36:55] [INFO ] After 17837ms SMT Verify possible using all constraints in natural domain returned unsat :2 sat :11
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-07 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-02 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 13 Parikh solutions to 11 different solutions.
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-05 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-00 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-01 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-09 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-03 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-08 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-10 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Diffusion2D-PT-D30N050-ReachabilityCardinality-12 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
Application raised an uncaught exception Index 1 out of bounds for length 0
java.lang.IndexOutOfBoundsException: Index 1 out of bounds for length 0
at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64)
at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70)
at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:266)
at java.base/java.util.Objects.checkIndex(Objects.java:359)
at java.base/java.util.ArrayList.get(ArrayList.java:427)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.interpretWalkerVerdict(ReachabilitySolver.java:410)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.interpretWalkerVerdict(ReachabilitySolver.java:402)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.applyReductions(ReachabilitySolver.java:170)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:902)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
Total runtime 26851 ms.

BK_STOP 1678343819932

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D30N050"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D30N050, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r133-smll-167819410400198"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D30N050.tgz
mv Diffusion2D-PT-D30N050 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;