Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r032-oct2-167813615700197.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool gold2022
Input is Angiogenesis-PT-01, examination is QuasiLiveness
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r032-oct2-167813615700197
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 532K
-rw-r--r-- 1 mcc users 7.3K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 66K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.6K Feb 26 14:53 CTLFireability.txt
-rw-r--r-- 1 mcc users 38K Feb 26 14:53 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.1K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 18K Feb 26 14:53 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 175K Feb 26 14:53 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.8K Feb 26 14:53 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 80K Feb 26 14:53 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 34K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME QuasiLiveness

=== Now, execution of the tool begins

BK_START 1678837079886

Running Version 202205111006
[2023-03-14 23:38:01] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, QuasiLiveness, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2023-03-14 23:38:01] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-14 23:38:02] [INFO ] Load time of PNML (sax parser for PT used): 138 ms
[2023-03-14 23:38:02] [INFO ] Transformed 39 places.
[2023-03-14 23:38:02] [INFO ] Transformed 64 transitions.
[2023-03-14 23:38:02] [INFO ] Found NUPN structural information;
[2023-03-14 23:38:02] [INFO ] Parsed PT model containing 39 places and 64 transitions in 269 ms.
Starting structural reductions in LIVENESS mode, iteration 0 : 39/39 places, 64/64 transitions.
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 1 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 1 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Performed 10 Post agglomeration using F-continuation condition.Transition count delta: 10
Deduced a syphon composed of 10 places in 0 ms
Reduce places removed 10 places and 0 transitions.
Iterating global reduction 1 with 20 rules applied. Total rules applied 24 place count 26 transition count 53
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: -6
Deduced a syphon composed of 5 places in 1 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 1 with 10 rules applied. Total rules applied 34 place count 21 transition count 59
Applied a total of 34 rules in 17 ms. Remains 21 /39 variables (removed 18) and now considering 59/64 (removed 5) transitions.
[2023-03-14 23:38:02] [INFO ] Flow matrix only has 38 transitions (discarded 21 similar events)
// Phase 1: matrix 38 rows 21 cols
[2023-03-14 23:38:02] [INFO ] Computed 6 place invariants in 18 ms
[2023-03-14 23:38:02] [INFO ] Implicit Places using invariants in 260 ms returned [17, 19]
Discarding 2 places :
Implicit Place search using SMT only with invariants took 297 ms to find 2 implicit places.
Starting structural reductions in LIVENESS mode, iteration 1 : 19/39 places, 59/64 transitions.
Graph (trivial) has 12 edges and 19 vertex of which 4 / 19 are part of one of the 2 SCC in 2 ms
Free SCC test removed 2 places
Ensure Unique test removed 4 transitions
Reduce isomorphic transitions removed 4 transitions.
Applied a total of 1 rules in 4 ms. Remains 17 /19 variables (removed 2) and now considering 55/59 (removed 4) transitions.
[2023-03-14 23:38:02] [INFO ] Flow matrix only has 32 transitions (discarded 23 similar events)
// Phase 1: matrix 32 rows 17 cols
[2023-03-14 23:38:02] [INFO ] Computed 4 place invariants in 1 ms
[2023-03-14 23:38:02] [INFO ] Implicit Places using invariants in 75 ms returned []
[2023-03-14 23:38:02] [INFO ] Flow matrix only has 32 transitions (discarded 23 similar events)
// Phase 1: matrix 32 rows 17 cols
[2023-03-14 23:38:02] [INFO ] Computed 4 place invariants in 3 ms
[2023-03-14 23:38:02] [INFO ] State equation strengthened by 3 read => feed constraints.
[2023-03-14 23:38:02] [INFO ] Implicit Places using invariants and state equation in 242 ms returned []
Implicit Place search using SMT with State Equation took 321 ms to find 0 implicit places.
Starting structural reductions in LIVENESS mode, iteration 2 : 17/39 places, 55/64 transitions.
Finished structural reductions, in 2 iterations. Remains : 17/39 places, 55/64 transitions.
Discarding 37 transitions out of 55. Remains 18
Initial state reduction rules removed 2 formulas.
Incomplete random walk after 10000 steps, including 152 resets, run finished after 534 ms. (steps per millisecond=18 ) properties (out of 16) seen :11
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 94 ms. (steps per millisecond=106 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 84 ms. (steps per millisecond=119 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 105 ms. (steps per millisecond=95 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 127 ms. (steps per millisecond=78 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 125 ms. (steps per millisecond=80 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
[2023-03-14 23:38:03] [INFO ] Flow matrix only has 32 transitions (discarded 23 similar events)
// Phase 1: matrix 32 rows 17 cols
[2023-03-14 23:38:03] [INFO ] Computed 4 place invariants in 0 ms
[2023-03-14 23:38:04] [INFO ] [Real]Absence check using 4 positive place invariants in 1 ms returned sat
[2023-03-14 23:38:04] [INFO ] After 101ms SMT Verify possible using all constraints in real domain returned unsat :3 sat :0 real:2
[2023-03-14 23:38:04] [INFO ] [Nat]Absence check using 4 positive place invariants in 2 ms returned sat
[2023-03-14 23:38:04] [INFO ] After 63ms SMT Verify possible using state equation in natural domain returned unsat :3 sat :2
[2023-03-14 23:38:04] [INFO ] State equation strengthened by 3 read => feed constraints.
[2023-03-14 23:38:04] [INFO ] After 7ms SMT Verify possible using 3 Read/Feed constraints in natural domain returned unsat :3 sat :2
[2023-03-14 23:38:04] [INFO ] Deduced a trap composed of 10 places in 40 ms of which 9 ms to minimize.
[2023-03-14 23:38:04] [INFO ] Trap strengthening procedure managed to obtain unsat after adding 1 trap constraints in 45 ms
[2023-03-14 23:38:04] [INFO ] After 58ms SMT Verify possible using trap constraints in natural domain returned unsat :5 sat :0
[2023-03-14 23:38:04] [INFO ] After 185ms SMT Verify possible using all constraints in natural domain returned unsat :5 sat :0
FORMULA QuasiLiveness FALSE TECHNIQUES RANDOM_WALK STRUCTURAL_REDUCTION TOPOLOGICAL INITIAL_STATE SAT_SMT
Total runtime 2403 ms.

BK_STOP 1678837084339

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ QuasiLiveness = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution QuasiLiveness -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination QuasiLiveness -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="QuasiLiveness"
export BK_TOOL="gold2022"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool gold2022"
echo " Input is Angiogenesis-PT-01, examination is QuasiLiveness"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r032-oct2-167813615700197"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "QuasiLiveness" = "ReachabilityDeadlock" ] || [ "QuasiLiveness" = "UpperBounds" ] || [ "QuasiLiveness" = "QuasiLiveness" ] || [ "QuasiLiveness" = "StableMarking" ] || [ "QuasiLiveness" = "Liveness" ] || [ "QuasiLiveness" = "OneSafe" ] || [ "QuasiLiveness" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "QuasiLiveness" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "QuasiLiveness" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "QuasiLiveness.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property QuasiLiveness.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "QuasiLiveness.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' QuasiLiveness.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "QuasiLiveness" = "ReachabilityDeadlock" ] || [ "QuasiLiveness" = "QuasiLiveness" ] || [ "QuasiLiveness" = "StableMarking" ] || [ "QuasiLiveness" = "Liveness" ] || [ "QuasiLiveness" = "OneSafe" ] ; then
echo "FORMULA_NAME QuasiLiveness"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;