Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r019-oct2-167813607400228.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-50, examination is StableMarking
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-oct2-167813607400228
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 512K
-rw-r--r-- 1 mcc users 12K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 122K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Feb 26 14:52 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 14:52 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 10K Feb 26 14:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 92K Feb 26 14:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.0K Feb 26 14:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 72K Feb 26 14:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME StableMarking

=== Now, execution of the tool begins

BK_START 1678895975307

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=StableMarking
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=Angiogenesis-PT-50
Not applying reductions.
Model is PT
StableMarking PT
Running Version 202303021504
[2023-03-15 15:59:38] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StableMarking, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2023-03-15 15:59:38] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-15 15:59:38] [INFO ] Load time of PNML (sax parser for PT used): 56 ms
[2023-03-15 15:59:38] [INFO ] Transformed 39 places.
[2023-03-15 15:59:38] [INFO ] Transformed 64 transitions.
[2023-03-15 15:59:38] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 219 ms.
Incomplete random walk after 10000 steps, including 2 resets, run finished after 126 ms. (steps per millisecond=79 ) properties (out of 39) seen :21
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 15 ms. (steps per millisecond=66 ) properties (out of 18) seen :3
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 24 ms. (steps per millisecond=41 ) properties (out of 15) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=143 ) properties (out of 15) seen :1
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 3 ms. (steps per millisecond=333 ) properties (out of 14) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 4 ms. (steps per millisecond=250 ) properties (out of 14) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 4 ms. (steps per millisecond=250 ) properties (out of 14) seen :1
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 25 ms. (steps per millisecond=40 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 23 ms. (steps per millisecond=43 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 28 ms. (steps per millisecond=35 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 2 ms. (steps per millisecond=500 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 2 ms. (steps per millisecond=500 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 2 ms. (steps per millisecond=500 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 3 ms. (steps per millisecond=333 ) properties (out of 13) seen :0
Incomplete Best-First random walk after 1001 steps, including 2 resets, run finished after 2 ms. (steps per millisecond=500 ) properties (out of 13) seen :1
Running SMT prover for 12 properties.
[2023-03-15 15:59:38] [INFO ] Flatten gal took : 42 ms
// Phase 1: matrix 64 rows 39 cols
[2023-03-15 15:59:38] [INFO ] Computed 8 place invariants in 6 ms
[2023-03-15 15:59:38] [INFO ] Flatten gal took : 28 ms
[2023-03-15 15:59:38] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality17856211574021390536.gal : 13 ms
[2023-03-15 15:59:38] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality13602043107062964369.prop : 13 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality17856211574021390536.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality13602043107062964369.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...330
Loading property file /tmp/ReachabilityCardinality13602043107062964369.prop.
SDD proceeding with computation,12 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,12 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,12 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,12 properties remain. new max is 32
SDD size :19 after 36
Invariant property smplace_2 does not hold.
SDD proceeding with computation,11 properties remain. new max is 32
SDD size :36 after 554
[2023-03-15 15:59:38] [INFO ] After 254ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:12
SDD proceeding with computation,11 properties remain. new max is 64
SDD size :554 after 2703
[2023-03-15 15:59:39] [INFO ] [Nat]Absence check using 8 positive place invariants in 14 ms returned sat
[2023-03-15 15:59:39] [INFO ] After 72ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :12
[2023-03-15 15:59:39] [INFO ] After 120ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :12
Attempting to minimize the solution found.
Minimization took 32 ms.
[2023-03-15 15:59:39] [INFO ] After 288ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :12
SDD proceeding with computation,11 properties remain. new max is 128
SDD size :2703 after 6753
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
[2023-03-15 15:59:39] [INFO ] Flatten gal took : 5 ms
[2023-03-15 15:59:39] [INFO ] Applying decomposition
[2023-03-15 15:59:39] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph321054434306576547.txt' '-o' '/tmp/graph321054434306576547.bin' '-w' '/tmp/graph321054434306576547.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph321054434306576547.bin' '-l' '-1' '-v' '-w' '/tmp/graph321054434306576547.weights' '-q' '0' '-e' '0.001'
[2023-03-15 15:59:39] [INFO ] Decomposing Gal with order
[2023-03-15 15:59:39] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-15 15:59:39] [INFO ] Removed a total of 39 redundant transitions.
[2023-03-15 15:59:39] [INFO ] Flatten gal took : 38 ms
[2023-03-15 15:59:39] [INFO ] Fuse similar labels procedure discarded/fused a total of 2 labels/synchronizations in 3 ms.
[2023-03-15 15:59:39] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality9137078235137046017.gal : 3 ms
[2023-03-15 15:59:39] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality7404418032281186968.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality9137078235137046017.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality7404418032281186968.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...307
Loading property file /tmp/ReachabilityCardinality7404418032281186968.prop.
SDD proceeding with computation,11 properties remain. new max is 4
SDD size :1 after 22
SDD proceeding with computation,11 properties remain. new max is 8
SDD size :22 after 195
SDD proceeding with computation,11 properties remain. new max is 16
SDD size :195 after 2958
SDD proceeding with computation,11 properties remain. new max is 32
SDD size :2958 after 74460
SDD proceeding with computation,11 properties remain. new max is 256
SDD size :6753 after 492113
SDD proceeding with computation,11 properties remain. new max is 64
SDD size :74460 after 2.76012e+06
SDD proceeding with computation,11 properties remain. new max is 512
SDD size :492113 after 4.18135e+07
SDD proceeding with computation,11 properties remain. new max is 1024
SDD size :4.18135e+07 after 1.73017e+08
Invariant property smplace_21 does not hold.
Invariant property smplace_20 does not hold.
Invariant property smplace_17 does not hold.
Invariant property smplace_15 does not hold.
SDD proceeding with computation,7 properties remain. new max is 1024
SDD size :1.73017e+08 after 5.54746e+09
SDD proceeding with computation,11 properties remain. new max is 128
SDD size :2.76012e+06 after 9.09116e+08
SDD proceeding with computation,11 properties remain. new max is 256
SDD size :9.09116e+08 after 4.55486e+09
Invariant property smplace_13 does not hold.
Invariant property smplace_9 does not hold.
SDD proceeding with computation,5 properties remain. new max is 1024
SDD size :5.54746e+09 after 1.32173e+11
SDD proceeding with computation,5 properties remain. new max is 2048
SDD size :1.32173e+11 after 6.00709e+11
SDD proceeding with computation,5 properties remain. new max is 4096
SDD size :6.00709e+11 after 4.07636e+12
SDD proceeding with computation,11 properties remain. new max is 512
SDD size :4.55486e+09 after 1.72803e+10
Detected timeout of ITS tools.
Detected timeout of ITS tools.
Application raised an uncaught exception Index 11 out of bounds for length 11
java.lang.IndexOutOfBoundsException: Index 11 out of bounds for length 11
at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64)
at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70)
at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:266)
at java.base/java.util.Objects.checkIndex(Objects.java:359)
at java.base/java.util.ArrayList.get(ArrayList.java:427)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.interpretWalkerVerdict(ReachabilitySolver.java:410)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.interpretWalkerVerdict(ReachabilitySolver.java:402)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.applyReductions(ReachabilitySolver.java:170)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.applyReachabilitySolver(GlobalPropertySolver.java:724)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.solveProperty(GlobalPropertySolver.java:558)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.preSolveLiveness(GlobalPropertySolver.java:412)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.preStableMarking(GlobalPropertySolver.java:321)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.solveProperty(GlobalPropertySolver.java:294)
at fr.lip6.move.gal.application.Application.startNoEx(Application.java:386)
at fr.lip6.move.gal.application.Application.start(Application.java:178)
at fr.lip6.move.gal.itscl.application.Application.start(Application.java:45)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:402)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596)
at org.eclipse.equinox.launcher.Main.run(Main.java:1467)
at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
Total runtime 601885 ms.

BK_STOP 1678896580190

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StableMarking = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="StableMarking"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-50, examination is StableMarking"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-oct2-167813607400228"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "UpperBounds" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] || [ "StableMarking" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StableMarking" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StableMarking" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StableMarking.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StableMarking.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StableMarking.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StableMarking.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] ; then
echo "FORMULA_NAME StableMarking"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;