Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r019-oct2-167813607300198.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.........................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-01, examination is StableMarking
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-oct2-167813607300198
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 532K
-rw-r--r-- 1 mcc users 7.3K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 66K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.6K Feb 26 14:53 CTLFireability.txt
-rw-r--r-- 1 mcc users 38K Feb 26 14:53 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 4.1K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 18K Feb 26 14:53 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 175K Feb 26 14:53 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.8K Feb 26 14:53 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 80K Feb 26 14:53 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 34K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME StableMarking

=== Now, execution of the tool begins

BK_START 1678895850431

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=StableMarking
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=1800
BK_INPUT=Angiogenesis-PT-01
Not applying reductions.
Model is PT
StableMarking PT
Running Version 202303021504
[2023-03-15 15:57:32] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StableMarking, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2023-03-15 15:57:32] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-15 15:57:32] [INFO ] Load time of PNML (sax parser for PT used): 41 ms
[2023-03-15 15:57:32] [INFO ] Transformed 39 places.
[2023-03-15 15:57:32] [INFO ] Transformed 64 transitions.
[2023-03-15 15:57:32] [INFO ] Found NUPN structural information;
[2023-03-15 15:57:32] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 113 ms.
[2023-03-15 15:57:33] [INFO ] Flatten gal took : 68 ms
[2023-03-15 15:57:33] [INFO ] Flatten gal took : 6 ms
[2023-03-15 15:57:33] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality4939856012806364979.gal : 6 ms
[2023-03-15 15:57:33] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality7937809715705693932.prop : 2 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality4939856012806364979.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality7937809715705693932.prop' '--nowitness' '--gen-order' 'FOLLOW'
Incomplete random walk after 10000 steps, including 3 resets, run finished after 388 ms. (steps per millisecond=25 ) properties (out of 39) seen :34

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...328
Loading property file /tmp/ReachabilityCardinality7937809715705693932.prop.
Invariant property smplace_36 does not hold.
Invariant property smplace_35 does not hold.
Invariant property smplace_31 does not hold.
SDD proceeding with computation,36 properties remain. new max is 2
SDD size :1 after 2
Invariant property smplace_33 does not hold.
Invariant property smplace_16 does not hold.
Invariant property smplace_14 does not hold.
Invariant property smplace_12 does not hold.
Invariant property smplace_11 does not hold.
Invariant property smplace_6 does not hold.
SDD proceeding with computation,30 properties remain. new max is 2
SDD size :2 after 8
Invariant property smplace_19 does not hold.
Invariant property smplace_18 does not hold.
SDD proceeding with computation,28 properties remain. new max is 2
SDD size :8 after 11
Invariant property smplace_37 does not hold.
Invariant property smplace_32 does not hold.
Invariant property smplace_2 does not hold.
Invariant property smplace_1 does not hold.
Invariant property smplace_0 does not hold.
SDD proceeding with computation,23 properties remain. new max is 2
SDD size :11 after 15
SDD proceeding with computation,23 properties remain. new max is 4
SDD size :15 after 18
SDD proceeding with computation,23 properties remain. new max is 8
SDD size :18 after 26
Invariant property smplace_20 does not hold.
Invariant property smplace_17 does not hold.
Invariant property smplace_15 does not hold.
SDD proceeding with computation,20 properties remain. new max is 8
SDD size :26 after 39
Invariant property smplace_34 does not hold.
Invariant property smplace_28 does not hold.
Invariant property smplace_23 does not hold.
Invariant property smplace_22 does not hold.
Invariant property smplace_10 does not hold.
Invariant property smplace_9 does not hold.
Invariant property smplace_8 does not hold.
SDD proceeding with computation,13 properties remain. new max is 8
SDD size :39 after 62
Invariant property smplace_26 does not hold.
Invariant property smplace_25 does not hold.
Invariant property smplace_24 does not hold.
SDD proceeding with computation,10 properties remain. new max is 8
SDD size :62 after 75
Invariant property smplace_30 does not hold.
Invariant property smplace_29 does not hold.
Invariant property smplace_5 does not hold.
Invariant property smplace_4 does not hold.
Invariant property smplace_3 does not hold.
SDD proceeding with computation,5 properties remain. new max is 8
SDD size :75 after 90
SDD proceeding with computation,5 properties remain. new max is 16
SDD size :100 after 104
SDD proceeding with computation,5 properties remain. new max is 32
SDD size :104 after 110
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst,110,0.030529,4092,2,284,45,1656,11,0,225,977,0
Total reachable state count : 110

Verifying 39 reachability properties.
Invariant property smplace_0 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_0,1,0.030812,4092,2,40,45,1656,12,0,228,977,0
Invariant property smplace_1 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_1,1,0.031025,4404,2,40,45,1656,13,0,230,977,0
Invariant property smplace_2 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_2,1,0.031135,4404,2,40,45,1656,14,0,232,977,0
Invariant property smplace_3 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_3,3,0.031235,4404,2,55,45,1656,15,0,234,977,0
Invariant property smplace_4 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_4,3,0.031335,4404,2,55,45,1656,16,0,236,977,0
Invariant property smplace_5 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_5,3,0.031428,4404,2,55,45,1656,17,0,238,977,0
Invariant property smplace_6 does not hold.

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
smplace\_6,2,0.03153,4404,2,42,45,1656,18,0,240,977,0
Invariant property smplace_7 is true.
FORMULA StableMarking TRUE TECHNIQUES RANDOM_WALK DECISION_DIAGRAMS COLLATERAL_PROCESSING TOPOLOGICAL
Incomplete Best-First random walk after 10000 steps, including 3 resets, run finished after 111 ms. (steps per millisecond=90 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 139 ms. (steps per millisecond=71 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 6 resets, run finished after 101 ms. (steps per millisecond=99 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 3 resets, run finished after 143 ms. (steps per millisecond=69 ) properties (out of 5) seen :0
Incomplete Best-First random walk after 10000 steps, including 3 resets, run finished after 62 ms. (steps per millisecond=161 ) properties (out of 5) seen :0
Total runtime 1115 ms.

BK_STOP 1678895853947

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StableMarking = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="StableMarking"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is StableMarking"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-oct2-167813607300198"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "UpperBounds" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] || [ "StableMarking" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StableMarking" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StableMarking" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StableMarking.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StableMarking.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StableMarking.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StableMarking.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] ; then
echo "FORMULA_NAME StableMarking"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;