Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r013-oct2-167813602300340.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool tapaal
Input is Angiogenesis-PT-15, examination is LTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r013-oct2-167813602300340
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 484K
-rw-r--r-- 1 mcc users 8.5K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 85K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Feb 26 14:55 CTLFireability.txt
-rw-r--r-- 1 mcc users 50K Feb 26 14:55 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.7K Feb 26 14:56 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 83K Feb 26 14:56 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 9.6K Feb 26 14:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 89K Feb 26 14:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-00
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-01
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-02
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-03
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-04
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-05
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-06
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-07
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-08
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-09
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-10
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-11
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-12
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-13
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-14
FORMULA_NAME Angiogenesis-PT-15-LTLFireability-15

=== Now, execution of the tool begins

BK_START 1678783308646

tapaal
Got BK_BIN_PATH=/home/mcc/BenchKit/bin/
---> tapaal --- TAPAAL
Setting MODEL_PATH=.
Setting VERIFYPN=/home/mcc/BenchKit/bin/verifypn
Got BK_TIME_CONFINEMENT=3600
Setting TEMPDIR=/home/mcc/BenchKit/bin/tmp
Got BK_MEMORY_CONFINEMENT=16384
Limiting to 16265216 kB
Total timeout: 3590
Time left: 3590

*************************************
* TAPAAL verifying LTLFireability *
*************************************
TEMPDIR=/home/mcc/BenchKit/bin/tmp
QF=/home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc
MF=/home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq
Time left: 3590
---------------------------------------------------
Step -1: Stripping Colors
---------------------------------------------------
Verifying stripped models (16 in total)

Time left: 3590
---------------------------------------------------
Step 0: Parallel Simplification
---------------------------------------------------
Doing parallel simplification (16 in total)
Total simplification timout is 718 -- reduction timeout is 299
timeout 1017 /home/mcc/BenchKit/bin/verifypn -n -ltl -q 718 -l 29 -d 299 -z 4 -s OverApprox --binary-query-io 2 --write-simplified /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --write-reduced /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq -x 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16 ./model.pnml ./LTLFireability.xml
FORMULA Angiogenesis-PT-15-LTLFireability-01 FALSE TECHNIQUES COLLATERAL_PROCESSING STRUCTURAL_REDUCTION QUERY_REDUCTION SAT_SMT LP_APPROX
Query index 1 was solved

Query is NOT satisfied.

FORMULA Angiogenesis-PT-15-LTLFireability-04 TRUE TECHNIQUES COLLATERAL_PROCESSING STRUCTURAL_REDUCTION QUERY_REDUCTION SAT_SMT LP_APPROX
Query index 4 was solved

Query is satisfied.

FORMULA Angiogenesis-PT-15-LTLFireability-08 FALSE TECHNIQUES COLLATERAL_PROCESSING STRUCTURAL_REDUCTION QUERY_REDUCTION SAT_SMT LP_APPROX
Query index 8 was solved

Query is NOT satisfied.

FORMULA Angiogenesis-PT-15-LTLFireability-09 FALSE TECHNIQUES COLLATERAL_PROCESSING STRUCTURAL_REDUCTION QUERY_REDUCTION SAT_SMT LP_APPROX
Query index 9 was solved

Query is NOT satisfied.

FORMULA Angiogenesis-PT-15-LTLFireability-11 TRUE TECHNIQUES COLLATERAL_PROCESSING STRUCTURAL_REDUCTION QUERY_REDUCTION SAT_SMT LP_APPROX
Query index 11 was solved

Query is satisfied.
Solution found by parallel simplification (step 0)
Solution found by parallel simplification (step 0)
Solution found by parallel simplification (step 0)
Solution found by parallel simplification (step 0)
Solution found by parallel simplification (step 0)
Time left: 3590

---------------------------------------------------
Step 1: Parallel processing
---------------------------------------------------
Doing parallel verification of individual queries (11 in total)
Each query is verified by 4 parallel strategies for 299 seconds
------------------- QUERY 1 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.072067 on verification
@@@0.07,148052@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ dist\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 1 -n

FORMULA Angiogenesis-PT-15-LTLFireability-15 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC DIST_HEUR OPTIM-1
Time left: 3589
------------------- QUERY 2 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.069191 on verification
@@@0.07,148176@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ dist\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 2 -n

FORMULA Angiogenesis-PT-15-LTLFireability-07 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC DIST_HEUR OPTIM-1
Time left: 3589
------------------- QUERY 3 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.015959 on verification
@@@0.02,20740@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ ndfs\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 3 -n

FORMULA Angiogenesis-PT-15-LTLFireability-13 FALSE TECHNIQUES EXPLICIT NDFS WEAK_SKIP HEURISTIC AUTOMATON_HEUR OPTIM-1
Time left: 3589
------------------- QUERY 4 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.073624 on verification
@@@0.08,149292@@@
FORMULA Angiogenesis-PT-15-LTLFireability-14 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC LOGFIRECOUNT_HEUR(5000) OPTIM-1

Query index 0 was solved
Query is NOT satisfied.
Spent 0.069967 on verification
@@@0.08,148800@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ fire-count\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 4 -n
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ aut\ -s\ DFS\ -p\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 4 -n

FORMULA Angiogenesis-PT-15-LTLFireability-14 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP OPTIM-1
Time left: 3588
------------------- QUERY 5 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.031968 on verification
@@@0.03,21104@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ ndfs\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 5 -n

FORMULA Angiogenesis-PT-15-LTLFireability-00 FALSE TECHNIQUES EXPLICIT NDFS WEAK_SKIP HEURISTIC AUTOMATON_HEUR OPTIM-1
Time left: 3588
------------------- QUERY 6 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.11493 on verification
@@@0.13,23288@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ ndfs\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 6 -n

FORMULA Angiogenesis-PT-15-LTLFireability-05 FALSE TECHNIQUES EXPLICIT NDFS WEAK_SKIP HEURISTIC AUTOMATON_HEUR OPTIM-1
Time left: 3588
------------------- QUERY 7 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.016114 on verification
@@@0.04,20264@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ ndfs\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 7 -n

FORMULA Angiogenesis-PT-15-LTLFireability-02 FALSE TECHNIQUES EXPLICIT NDFS WEAK_SKIP HEURISTIC AUTOMATON_HEUR OPTIM-1
Time left: 3587
------------------- QUERY 8 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.056369 on verification
@@@0.05,148300@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ fire-count\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 8 -n

FORMULA Angiogenesis-PT-15-LTLFireability-10 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC LOGFIRECOUNT_HEUR(5000) OPTIM-1
Time left: 3587
------------------- QUERY 9 ----------------------
No solution found



Time left: 3285
------------------- QUERY 10 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is NOT satisfied.
Spent 0.061495 on verification
@@@0.06,148752@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ fire-count\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 10 -n

FORMULA Angiogenesis-PT-15-LTLFireability-03 FALSE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC LOGFIRECOUNT_HEUR(5000) OPTIM-1
Time left: 3285
------------------- QUERY 11 ----------------------
Solution found by parallel processing (step 1)

Query index 0 was solved
Query is satisfied.
Spent 0.054935 on verification
@@@0.06,148092@@@
parallel: This job succeeded:
eval /usr/bin/time -f "@@@%e,%M@@@" /home/mcc/BenchKit/bin/verifypn -n -ltl\ tarjan\ --ltl-heur\ fire-count\ -q\ 0\ -l\ 0\ -d\ 119 /home/mcc/BenchKit/bin/tmp/tmp.20pKfFmutq /home/mcc/BenchKit/bin/tmp/tmp.p8t0PpwNXc --binary-query-io 1 -x 11 -n

FORMULA Angiogenesis-PT-15-LTLFireability-12 TRUE TECHNIQUES EXPLICIT TARJAN WEAK_SKIP STUBBORN AUT_STUB HEURISTIC LOGFIRECOUNT_HEUR(5000) OPTIM-1
Time left: 3285
---------------------------------------------------
Step 2: Sequential processing
---------------------------------------------------
Remaining 1 queries are verified sequentially.
Each query is verified for a dynamic timeout (at least 598 seconds)
Time left: 3285
------------------- QUERY 9 ----------------------
Running query 9 for 3285 seconds. Remaining: 1 queries and 3285 seconds
No solution found
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
@@@956.37,14953816@@@


Time left: 2328
Time left: 2328
---------------------------------------------------
Step 4: Random Parallel processing
---------------------------------------------------
Doing random parallel verification of individual queries (1 in total)
Each query is verified by 4 parallel strategies for 2328 seconds
------------------- QUERY 9 ----------------------
No solution found
Command terminated by signal 9
@@@220.35,4254108@@@
Command terminated by signal 9
@@@324.99,5735564@@@
Command terminated by signal 9
@@@445.02,10119940@@@
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
@@@1030.28,15479416@@@


Time left: 1297
Time left: 1297
---------------------------------------------------
Step 4: Random Parallel processing
---------------------------------------------------
Doing random parallel verification of individual queries (1 in total)
Each query is verified by 4 parallel strategies for 1297 seconds
------------------- QUERY 9 ----------------------
No solution found
Command terminated by signal 9
@@@268.29,4373796@@@
Command terminated by signal 9
@@@399.20,5630072@@@
Command terminated by signal 9
@@@515.06,8252000@@@
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
@@@1063.52,15469280@@@


Time left: 233
Time left: 233
---------------------------------------------------
Step 4: Random Parallel processing
---------------------------------------------------
Doing random parallel verification of individual queries (1 in total)
Each query is verified by 4 parallel strategies for 233 seconds
------------------- QUERY 9 ----------------------
No solution found



Time left: -3
Out of time, terminating!
terminated-with-cleanup

BK_STOP 1678786901060

--------------------
content from stderr:

CPN OverApproximation is only usable on colored models

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="LTLFireability"
export BK_TOOL="tapaal"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool tapaal"
echo " Input is Angiogenesis-PT-15, examination is LTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r013-oct2-167813602300340"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "UpperBounds" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] || [ "LTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLFireability" = "ReachabilityDeadlock" ] || [ "LTLFireability" = "QuasiLiveness" ] || [ "LTLFireability" = "StableMarking" ] || [ "LTLFireability" = "Liveness" ] || [ "LTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;