Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r009-oct2-167813597800343.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool ltsminxred
Input is Angiogenesis-PT-15, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r009-oct2-167813597800343
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 484K
-rw-r--r-- 1 mcc users 8.5K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 85K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Feb 26 14:55 CTLFireability.txt
-rw-r--r-- 1 mcc users 50K Feb 26 14:55 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.7K Feb 26 14:56 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 83K Feb 26 14:56 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 9.6K Feb 26 14:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 89K Feb 26 14:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1678623087600

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=ltsminxred
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-15
Applying reductions before tool ltsmin
Invoking reducer
Running Version 202303021504
[2023-03-12 12:11:30] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -timeout, 360, -rebuildPNML]
[2023-03-12 12:11:30] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-12 12:11:30] [INFO ] Load time of PNML (sax parser for PT used): 36 ms
[2023-03-12 12:11:30] [INFO ] Transformed 39 places.
[2023-03-12 12:11:30] [INFO ] Transformed 64 transitions.
[2023-03-12 12:11:30] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 151 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 47 ms.
Working with output stream class java.io.PrintStream
FORMULA Angiogenesis-PT-15-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-15-ReachabilityFireability-07 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-15-ReachabilityFireability-08 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10000 steps, including 3 resets, run finished after 221 ms. (steps per millisecond=45 ) properties (out of 13) seen :5
FORMULA Angiogenesis-PT-15-ReachabilityFireability-13 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-06 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 39 ms. (steps per millisecond=256 ) properties (out of 8) seen :4
FORMULA Angiogenesis-PT-15-ReachabilityFireability-14 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-11 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-09 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-01 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 32 ms. (steps per millisecond=312 ) properties (out of 4) seen :1
FORMULA Angiogenesis-PT-15-ReachabilityFireability-05 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 40 ms. (steps per millisecond=250 ) properties (out of 3) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 93 ms. (steps per millisecond=107 ) properties (out of 3) seen :0
Running SMT prover for 3 properties.
// Phase 1: matrix 64 rows 39 cols
[2023-03-12 12:11:31] [INFO ] Computed 8 place invariants in 4 ms
[2023-03-12 12:11:31] [INFO ] [Real]Absence check using 8 positive place invariants in 20 ms returned sat
[2023-03-12 12:11:31] [INFO ] After 421ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:3
[2023-03-12 12:11:31] [INFO ] [Nat]Absence check using 8 positive place invariants in 3 ms returned sat
[2023-03-12 12:11:32] [INFO ] After 142ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :3
[2023-03-12 12:11:32] [INFO ] After 275ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :3
Attempting to minimize the solution found.
Minimization took 94 ms.
[2023-03-12 12:11:32] [INFO ] After 484ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :3
FORMULA Angiogenesis-PT-15-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 1 properties in 13 ms.
Support contains 34 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Applied a total of 1 rules in 12 ms. Remains 38 /39 variables (removed 1) and now considering 64/64 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 12 ms. Remains : 38/39 places, 64/64 transitions.
Incomplete random walk after 10012 steps, including 2 resets, run finished after 16 ms. (steps per millisecond=625 ) properties (out of 2) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 22 ms. (steps per millisecond=454 ) properties (out of 2) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 31 ms. (steps per millisecond=322 ) properties (out of 2) seen :0
Interrupted probabilistic random walk after 383213 steps, run timeout after 3001 ms. (steps per millisecond=127 ) properties seen :{}
Probabilistic random walk after 383213 steps, saw 245781 distinct states, run finished after 3004 ms. (steps per millisecond=127 ) properties seen :0
Running SMT prover for 2 properties.
// Phase 1: matrix 64 rows 38 cols
[2023-03-12 12:11:35] [INFO ] Computed 7 place invariants in 14 ms
[2023-03-12 12:11:35] [INFO ] [Real]Absence check using 7 positive place invariants in 2 ms returned sat
[2023-03-12 12:11:35] [INFO ] After 46ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2023-03-12 12:11:35] [INFO ] [Nat]Absence check using 7 positive place invariants in 2 ms returned sat
[2023-03-12 12:11:35] [INFO ] After 76ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2023-03-12 12:11:35] [INFO ] After 158ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
Minimization took 72 ms.
[2023-03-12 12:11:35] [INFO ] After 277ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
Parikh walk visited 0 properties in 12 ms.
Support contains 34 out of 38 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 38/38 places, 64/64 transitions.
Applied a total of 0 rules in 5 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 6 ms. Remains : 38/38 places, 64/64 transitions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 38/38 places, 64/64 transitions.
Applied a total of 0 rules in 4 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2023-03-12 12:11:35] [INFO ] Invariant cache hit.
[2023-03-12 12:11:35] [INFO ] Implicit Places using invariants in 54 ms returned []
[2023-03-12 12:11:35] [INFO ] Invariant cache hit.
[2023-03-12 12:11:35] [INFO ] Implicit Places using invariants and state equation in 85 ms returned []
Implicit Place search using SMT with State Equation took 145 ms to find 0 implicit places.
[2023-03-12 12:11:35] [INFO ] Redundant transitions in 1 ms returned []
[2023-03-12 12:11:35] [INFO ] Invariant cache hit.
[2023-03-12 12:11:36] [INFO ] Dead Transitions using invariants and state equation in 106 ms found 0 transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 269 ms. Remains : 38/38 places, 64/64 transitions.
Applied a total of 0 rules in 5 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
Running SMT prover for 2 properties.
[2023-03-12 12:11:36] [INFO ] Invariant cache hit.
[2023-03-12 12:11:36] [INFO ] [Real]Absence check using 7 positive place invariants in 4 ms returned sat
[2023-03-12 12:11:36] [INFO ] After 57ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2023-03-12 12:11:36] [INFO ] [Nat]Absence check using 7 positive place invariants in 3 ms returned sat
[2023-03-12 12:11:36] [INFO ] After 71ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2023-03-12 12:11:36] [INFO ] After 181ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
Minimization took 43 ms.
[2023-03-12 12:11:36] [INFO ] After 275ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
[2023-03-12 12:11:36] [INFO ] Export to MCC of 2 properties in file /home/mcc/execution/ReachabilityFireability.sr.xml took 7 ms.
[2023-03-12 12:11:36] [INFO ] Export to PNML in file /home/mcc/execution/model.sr.pnml of net with 38 places, 64 transitions and 184 arcs took 1 ms.
[2023-03-12 12:11:36] [INFO ] Flatten gal took : 51 ms
Total runtime 6243 ms.
There are residual formulas that ITS could not solve within timeout
pnml2lts-sym model.pnml --lace-workers=4 --vset=lddmc --saturation=sat -rbs,w2W,ru,hf --sylvan-sizes=20,28,20,28 --inv-bin-par --invariant=/tmp/490/inv_0_ --invariant=/tmp/490/inv_1_ --inv-par
FORMULA Angiogenesis-PT-15-ReachabilityFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS PARALLEL_PROCESSING USE_NUPN
FORMULA Angiogenesis-PT-15-ReachabilityFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS PARALLEL_PROCESSING USE_NUPN

BK_STOP 1678624412176

--------------------
content from stderr:

+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ perl -pe 's/.*\.//g'
++ sed s/.jar//
++ ls /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../reducer/bin//../../itstools//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityFireability -timeout 360 -rebuildPNML
mcc2023
rfs formula name Angiogenesis-PT-15-ReachabilityFireability-03
rfs formula type EF
rfs formula formula --invariant=/tmp/490/inv_0_
rfs formula name Angiogenesis-PT-15-ReachabilityFireability-15
rfs formula type AG
rfs formula formula --invariant=/tmp/490/inv_1_
pnml2lts-sym: Exploration order is bfs-prev
pnml2lts-sym: Saturation strategy is sat
pnml2lts-sym: Guided search strategy is unguided
pnml2lts-sym: Attractor strategy is default
pnml2lts-sym: opening model.pnml
pnml2lts-sym: Edge label is id
Warning: program compiled against libxml 210 using older 209
pnml2lts-sym: Petri net has 38 places, 64 transitions and 184 arcs
pnml2lts-sym: Petri net Angiogenesis_PT_15 analyzed
pnml2lts-sym: There are no safe places
pnml2lts-sym: Loading Petri net took 0.000 real 0.000 user 0.000 sys
pnml2lts-sym: Initializing regrouping layer
pnml2lts-sym: Regroup specification: bs,w2W,ru,hf
pnml2lts-sym: Regroup Boost's Sloan
pnml2lts-sym: Regroup over-approximate must-write to may-write
pnml2lts-sym: Regroup Row sUbsume
pnml2lts-sym: Reqroup Horizontal Flip
pnml2lts-sym: Regrouping: 64->39 groups
pnml2lts-sym: Regrouping took 0.000 real 0.000 user 0.010 sys
pnml2lts-sym: state vector length is 38; there are 39 groups
pnml2lts-sym: Creating a multi-core ListDD domain.
pnml2lts-sym: Sylvan allocates 15.000 GB virtual memory for nodes table and operation cache.
pnml2lts-sym: Initial nodes table and operation cache requires 60.00 MB.
pnml2lts-sym: Using GBgetTransitionsShortR2W as next-state function
pnml2lts-sym: got initial state
pnml2lts-sym: vset_sylvan: starting garbage collection
pnml2lts-sym: vset_sylvan: garbage collection done
pnml2lts-sym: vset_sylvan: starting garbage collection
pnml2lts-sym: vset_sylvan: garbage collection done
pnml2lts-sym: vset_sylvan: starting garbage collection
pnml2lts-sym: vset_sylvan: garbage collection done
pnml2lts-sym: vset_sylvan: starting garbage collection
pnml2lts-sym: vset_sylvan: garbage collection done
pnml2lts-sym: vset_sylvan: starting garbage collection
pnml2lts-sym: vset_sylvan: garbage collection done
pnml2lts-sym:
pnml2lts-sym: Invariant violation (/tmp/490/inv_0_) found at depth -1!
pnml2lts-sym:
pnml2lts-sym:
pnml2lts-sym: Invariant violation (/tmp/490/inv_1_) found at depth -1!
pnml2lts-sym:
pnml2lts-sym: all invariants violated
pnml2lts-sym: exiting now
pnml2lts-sym: invariant detection took 1314.480 real 5248.630 user 4.740 sys
pnml2lts-sym: max token count: 15

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="ltsminxred"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool ltsminxred"
echo " Input is Angiogenesis-PT-15, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r009-oct2-167813597800343"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;