Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r005-oct2-167813593000367.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-50, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r005-oct2-167813593000367
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 520K
-rw-r--r-- 1 mcc users 12K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 122K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Feb 26 14:52 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 14:52 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 10K Feb 26 14:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 92K Feb 26 14:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.0K Feb 26 14:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 72K Feb 26 14:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1678511453408

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-50
Not applying reductions.
Model is PT
ReachabilityFireability PT
Running Version 202303021504
[2023-03-11 05:10:56] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-11 05:10:56] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-11 05:10:56] [INFO ] Load time of PNML (sax parser for PT used): 42 ms
[2023-03-11 05:10:56] [INFO ] Transformed 39 places.
[2023-03-11 05:10:56] [INFO ] Transformed 64 transitions.
[2023-03-11 05:10:56] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 210 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 23 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10002 steps, including 2 resets, run finished after 131 ms. (steps per millisecond=76 ) properties (out of 16) seen :3
FORMULA Angiogenesis-PT-50-ReachabilityFireability-15 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-01 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 102 ms. (steps per millisecond=98 ) properties (out of 13) seen :3
FORMULA Angiogenesis-PT-50-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
[2023-03-11 05:10:57] [INFO ] Flatten gal took : 62 ms
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 119 ms. (steps per millisecond=84 ) properties (out of 10) seen :2
FORMULA Angiogenesis-PT-50-ReachabilityFireability-08 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
[2023-03-11 05:10:57] [INFO ] Flatten gal took : 20 ms
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 53 ms. (steps per millisecond=188 ) properties (out of 8) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 22 ms. (steps per millisecond=454 ) properties (out of 8) seen :3
FORMULA Angiogenesis-PT-50-ReachabilityFireability-14 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-07 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-50-ReachabilityFireability-05 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
[2023-03-11 05:10:57] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality3256058563615373307.gal : 9 ms
[2023-03-11 05:10:57] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality17680340904313212422.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality3256058563615373307.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality17680340904313212422.prop' '--nowitness' '--gen-order' 'FOLLOW'
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 24 ms. (steps per millisecond=416 ) properties (out of 5) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityFireability-09 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 22 ms. (steps per millisecond=454 ) properties (out of 4) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityFireability-10 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 56 ms. (steps per millisecond=178 ) properties (out of 3) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityFireability-11 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality17680340904313212422.prop.
SDD proceeding with computation,8 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,8 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,8 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,8 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,8 properties remain. new max is 64
SDD size :36 after 554
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 41 ms. (steps per millisecond=243 ) properties (out of 2) seen :1
FORMULA Angiogenesis-PT-50-ReachabilityFireability-12 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Running SMT prover for 1 properties.
// Phase 1: matrix 64 rows 39 cols
[2023-03-11 05:10:57] [INFO ] Computed 8 place invariants in 4 ms
SDD proceeding with computation,8 properties remain. new max is 128
SDD size :554 after 4703
[2023-03-11 05:10:57] [INFO ] [Real]Absence check using 8 positive place invariants in 19 ms returned sat
[2023-03-11 05:10:57] [INFO ] After 233ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:1
[2023-03-11 05:10:57] [INFO ] [Nat]Absence check using 8 positive place invariants in 6 ms returned sat
[2023-03-11 05:10:57] [INFO ] After 58ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :1
[2023-03-11 05:10:57] [INFO ] After 73ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :1
Attempting to minimize the solution found.
Minimization took 22 ms.
[2023-03-11 05:10:57] [INFO ] After 147ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :1
Parikh walk visited 0 properties in 3 ms.
Support contains 20 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 5 place count 36 transition count 62
Free-agglomeration rule (complex) applied 1 times.
Iterating global reduction 1 with 1 rules applied. Total rules applied 6 place count 36 transition count 61
Reduce places removed 1 places and 0 transitions.
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 1 with 2 rules applied. Total rules applied 8 place count 35 transition count 60
Applied a total of 8 rules in 21 ms. Remains 35 /39 variables (removed 4) and now considering 60/64 (removed 4) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 21 ms. Remains : 35/39 places, 60/64 transitions.
Incomplete random walk after 10002 steps, including 2 resets, run finished after 4 ms. (steps per millisecond=2500 ) properties (out of 1) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=1111 ) properties (out of 1) seen :0
SDD proceeding with computation,8 properties remain. new max is 256
SDD size :4703 after 12753
Interrupted probabilistic random walk after 1784366 steps, run timeout after 3001 ms. (steps per millisecond=594 ) properties seen :{}
Probabilistic random walk after 1784366 steps, saw 1186881 distinct states, run finished after 3004 ms. (steps per millisecond=593 ) properties seen :0
Running SMT prover for 1 properties.
// Phase 1: matrix 60 rows 35 cols
[2023-03-11 05:11:00] [INFO ] Computed 6 place invariants in 1 ms
[2023-03-11 05:11:01] [INFO ] [Real]Absence check using 6 positive place invariants in 2 ms returned sat
[2023-03-11 05:11:01] [INFO ] After 87ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:1
[2023-03-11 05:11:01] [INFO ] [Nat]Absence check using 6 positive place invariants in 9 ms returned sat
[2023-03-11 05:11:01] [INFO ] After 33ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :1
[2023-03-11 05:11:01] [INFO ] After 46ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :1
Attempting to minimize the solution found.
Minimization took 9 ms.
[2023-03-11 05:11:01] [INFO ] After 106ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :1
Parikh walk visited 0 properties in 1 ms.
Support contains 20 out of 35 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 35/35 places, 60/60 transitions.
Applied a total of 0 rules in 2 ms. Remains 35 /35 variables (removed 0) and now considering 60/60 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 3 ms. Remains : 35/35 places, 60/60 transitions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 35/35 places, 60/60 transitions.
Applied a total of 0 rules in 2 ms. Remains 35 /35 variables (removed 0) and now considering 60/60 (removed 0) transitions.
[2023-03-11 05:11:01] [INFO ] Invariant cache hit.
[2023-03-11 05:11:01] [INFO ] Implicit Places using invariants in 53 ms returned [32]
Discarding 1 places :
Implicit Place search using SMT only with invariants took 55 ms to find 1 implicit places.
Starting structural reductions in REACHABILITY mode, iteration 1 : 34/35 places, 60/60 transitions.
Drop transitions removed 1 transitions
Redundant transition composition rules discarded 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 1 place count 34 transition count 59
Applied a total of 1 rules in 3 ms. Remains 34 /34 variables (removed 0) and now considering 59/60 (removed 1) transitions.
// Phase 1: matrix 59 rows 34 cols
[2023-03-11 05:11:01] [INFO ] Computed 5 place invariants in 1 ms
[2023-03-11 05:11:01] [INFO ] Implicit Places using invariants in 49 ms returned []
[2023-03-11 05:11:01] [INFO ] Invariant cache hit.
[2023-03-11 05:11:01] [INFO ] Implicit Places using invariants and state equation in 57 ms returned []
Implicit Place search using SMT with State Equation took 108 ms to find 0 implicit places.
Starting structural reductions in REACHABILITY mode, iteration 2 : 34/35 places, 59/60 transitions.
Finished structural reductions in REACHABILITY mode , in 2 iterations and 169 ms. Remains : 34/35 places, 59/60 transitions.
Incomplete random walk after 10004 steps, including 2 resets, run finished after 3 ms. (steps per millisecond=3334 ) properties (out of 1) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=1111 ) properties (out of 1) seen :0
Interrupted probabilistic random walk after 1796511 steps, run timeout after 3001 ms. (steps per millisecond=598 ) properties seen :{}
Probabilistic random walk after 1796511 steps, saw 1192654 distinct states, run finished after 3001 ms. (steps per millisecond=598 ) properties seen :0
Running SMT prover for 1 properties.
[2023-03-11 05:11:04] [INFO ] Invariant cache hit.
[2023-03-11 05:11:04] [INFO ] [Real]Absence check using 5 positive place invariants in 2 ms returned sat
[2023-03-11 05:11:04] [INFO ] After 57ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:1
[2023-03-11 05:11:04] [INFO ] [Nat]Absence check using 5 positive place invariants in 34 ms returned sat
[2023-03-11 05:11:04] [INFO ] After 91ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :1
[2023-03-11 05:11:04] [INFO ] After 105ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :1
Attempting to minimize the solution found.
Minimization took 11 ms.
[2023-03-11 05:11:04] [INFO ] After 177ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :1
Parikh walk visited 0 properties in 1 ms.
Support contains 20 out of 34 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 34/34 places, 59/59 transitions.
Applied a total of 0 rules in 4 ms. Remains 34 /34 variables (removed 0) and now considering 59/59 (removed 0) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 4 ms. Remains : 34/34 places, 59/59 transitions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 34/34 places, 59/59 transitions.
Applied a total of 0 rules in 2 ms. Remains 34 /34 variables (removed 0) and now considering 59/59 (removed 0) transitions.
[2023-03-11 05:11:04] [INFO ] Invariant cache hit.
[2023-03-11 05:11:04] [INFO ] Implicit Places using invariants in 46 ms returned []
[2023-03-11 05:11:04] [INFO ] Invariant cache hit.
[2023-03-11 05:11:04] [INFO ] Implicit Places using invariants and state equation in 147 ms returned []
Implicit Place search using SMT with State Equation took 195 ms to find 0 implicit places.
[2023-03-11 05:11:04] [INFO ] Redundant transitions in 0 ms returned []
[2023-03-11 05:11:04] [INFO ] Invariant cache hit.
[2023-03-11 05:11:04] [INFO ] Dead Transitions using invariants and state equation in 71 ms found 0 transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 278 ms. Remains : 34/34 places, 59/59 transitions.
Applied a total of 0 rules in 1 ms. Remains 34 /34 variables (removed 0) and now considering 59/59 (removed 0) transitions.
Running SMT prover for 1 properties.
[2023-03-11 05:11:04] [INFO ] Invariant cache hit.
[2023-03-11 05:11:04] [INFO ] [Real]Absence check using 5 positive place invariants in 1 ms returned sat
[2023-03-11 05:11:04] [INFO ] After 97ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:1
[2023-03-11 05:11:05] [INFO ] [Nat]Absence check using 5 positive place invariants in 40 ms returned sat
[2023-03-11 05:11:05] [INFO ] After 27ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :1
[2023-03-11 05:11:05] [INFO ] After 42ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :1
Attempting to minimize the solution found.
Minimization took 11 ms.
[2023-03-11 05:11:05] [INFO ] After 144ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :1
[2023-03-11 05:11:05] [INFO ] Flatten gal took : 6 ms
[2023-03-11 05:11:05] [INFO ] Flatten gal took : 4 ms
[2023-03-11 05:11:05] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality1411654179583325312.gal : 2 ms
[2023-03-11 05:11:05] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality14869275786855851646.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality1411654179583325312.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality14869275786855851646.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality14869275786855851646.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,1 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :36 after 305
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :305 after 6653
SDD proceeding with computation,1 properties remain. new max is 256
SDD size :6653 after 774363
SDD proceeding with computation,1 properties remain. new max is 512
SDD size :774363 after 6.5752e+06
SDD proceeding with computation,1 properties remain. new max is 1024
SDD size :6.5752e+06 after 1.80362e+07
SDD proceeding with computation,1 properties remain. new max is 2048
SDD size :1.80362e+07 after 2.71544e+09
SDD proceeding with computation,1 properties remain. new max is 4096
SDD size :2.71544e+09 after 1.875e+10
SDD proceeding with computation,8 properties remain. new max is 512
SDD proceeding with computation,1 properties remain. new max is 8192
SDD size :1.875e+10 after 1.09798e+12
SDD size :12753 after 3.3853e+07
Detected timeout of ITS tools.
[2023-03-11 05:11:20] [INFO ] Flatten gal took : 27 ms
[2023-03-11 05:11:20] [INFO ] Applying decomposition
[2023-03-11 05:11:20] [INFO ] Flatten gal took : 7 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph9549668917818016304.txt' '-o' '/tmp/graph9549668917818016304.bin' '-w' '/tmp/graph9549668917818016304.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph9549668917818016304.bin' '-l' '-1' '-v' '-w' '/tmp/graph9549668917818016304.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:11:20] [INFO ] Decomposing Gal with order
[2023-03-11 05:11:20] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:11:20] [INFO ] Removed a total of 21 redundant transitions.
[2023-03-11 05:11:20] [INFO ] Flatten gal took : 57 ms
[2023-03-11 05:11:20] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 3 ms.
[2023-03-11 05:11:20] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality8217628597888118517.gal : 4 ms
[2023-03-11 05:11:20] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality10088914143096474378.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality8217628597888118517.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality10088914143096474378.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...308
Loading property file /tmp/ReachabilityCardinality10088914143096474378.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,1 properties remain. new max is 16
SDD size :10 after 19
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :19 after 36
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :36 after 51
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :51 after 51
SDD proceeding with computation,1 properties remain. new max is 256
SDD size :51 after 51
SDD proceeding with computation,1 properties remain. new max is 512
SDD size :51 after 5355
SDD proceeding with computation,1 properties remain. new max is 1024
SDD size :5355 after 7.61123e+07
SDD proceeding with computation,1 properties remain. new max is 2048
SDD size :7.61123e+07 after 1.9012e+09
SDD proceeding with computation,8 properties remain. new max is 1024
SDD size :3.3853e+07 after 1.67592e+08
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin17455922612611032675
[2023-03-11 05:11:35] [INFO ] Built C files in 27ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin17455922612611032675
Running compilation step : cd /tmp/ltsmin17455922612611032675;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/limit_time.pl' '3' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Compilation finished in 358 ms.
Running link step : cd /tmp/ltsmin17455922612611032675;'gcc' '-shared' '-o' 'gal.so' 'model.o'
Link finished in 95 ms.
Running LTSmin : cd /tmp/ltsmin17455922612611032675;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '--when' '-i' 'AngiogenesisPT50ReachabilityFireability04==true'
LTSmin run took 822 ms.
Found Violation
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
[2023-03-11 05:11:36] [INFO ] Flatten gal took : 4 ms
[2023-03-11 05:11:36] [INFO ] Applying decomposition
[2023-03-11 05:11:36] [INFO ] Flatten gal took : 3 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph18233851989066428238.txt' '-o' '/tmp/graph18233851989066428238.bin' '-w' '/tmp/graph18233851989066428238.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph18233851989066428238.bin' '-l' '-1' '-v' '-w' '/tmp/graph18233851989066428238.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:11:36] [INFO ] Decomposing Gal with order
[2023-03-11 05:11:36] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:11:36] [INFO ] Removed a total of 39 redundant transitions.
[2023-03-11 05:11:36] [INFO ] Flatten gal took : 7 ms
[2023-03-11 05:11:36] [INFO ] Fuse similar labels procedure discarded/fused a total of 2 labels/synchronizations in 2 ms.
[2023-03-11 05:11:36] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality10877067887662931771.gal : 1 ms
[2023-03-11 05:11:36] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality11662918057108830571.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality10877067887662931771.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality11662918057108830571.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...309
Loading property file /tmp/ReachabilityCardinality11662918057108830571.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 10
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :10 after 36
SDD proceeding with computation,1 properties remain. new max is 16
SDD size :36 after 136
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :136 after 528
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :528 after 76401
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :76401 after 8.85503e+06
SDD proceeding with computation,1 properties remain. new max is 256
SDD size :8.85503e+06 after 3.07701e+07
SDD proceeding with computation,1 properties remain. new max is 512
SDD size :3.07701e+07 after 1.04358e+08
SDD proceeding with computation,1 properties remain. new max is 1024
SDD size :1.04358e+08 after 1.00732e+09
SDD proceeding with computation,1 properties remain. new max is 2048
SDD size :1.00732e+09 after 6.62258e+09
Invariant property Angiogenesis-PT-50-ReachabilityFireability-07 does not hold.
Reachability property Angiogenesis-PT-50-ReachabilityFireability-05 is true.
SDD proceeding with computation,6 properties remain. new max is 1024
SDD size :1.67592e+08 after 4.98246e+09
SDD proceeding with computation,1 properties remain. new max is 4096
SDD size :2.61335e+14 after 2.92654e+14
SDD proceeding with computation,1 properties remain. new max is 8192
SDD size :2.92654e+14 after 3.46407e+14
Detected timeout of ITS tools.
Detected timeout of ITS tools.
[2023-03-11 05:41:37] [INFO ] Flatten gal took : 35 ms
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin3682231312452600151
[2023-03-11 05:41:37] [INFO ] Computing symmetric may disable matrix : 59 transitions.
[2023-03-11 05:41:37] [INFO ] Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:37] [INFO ] Applying decomposition
[2023-03-11 05:41:37] [INFO ] Computing symmetric may enable matrix : 59 transitions.
[2023-03-11 05:41:37] [INFO ] Computation of Complete enable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:37] [INFO ] Flatten gal took : 4 ms
[2023-03-11 05:41:37] [INFO ] Computing Do-Not-Accords matrix : 59 transitions.
[2023-03-11 05:41:37] [INFO ] Computation of Completed DNA matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2023-03-11 05:41:37] [INFO ] Built C files in 16ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin3682231312452600151
Running compilation step : cd /tmp/ltsmin3682231312452600151;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/limit_time.pl' '720' 'gcc' '-c' '-I/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/include/' '-I.' '-std=c99' '-fPIC' '-O0' 'model.c'
Converted graph to binary with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/convert-linux64' '-i' '/tmp/graph16680162855801434726.txt' '-o' '/tmp/graph16680162855801434726.bin' '-w' '/tmp/graph16680162855801434726.weights'
Built communities with : '/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202303021504/bin/louvain-linux64' '/tmp/graph16680162855801434726.bin' '-l' '-1' '-v' '-w' '/tmp/graph16680162855801434726.weights' '-q' '0' '-e' '0.001'
[2023-03-11 05:41:37] [INFO ] Decomposing Gal with order
[2023-03-11 05:41:37] [INFO ] Rewriting arrays to variables to allow decomposition.
[2023-03-11 05:41:37] [INFO ] Removed a total of 31 redundant transitions.
[2023-03-11 05:41:37] [INFO ] Flatten gal took : 76 ms
Compilation finished in 136 ms.
Running link step : cd /tmp/ltsmin3682231312452600151;'gcc' '-shared' '-o' 'gal.so' 'model.o'
[2023-03-11 05:41:37] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 1 ms.
[2023-03-11 05:41:37] [INFO ] Time to serialize gal into /tmp/ReachabilityFireability9149628367219395587.gal : 2 ms
[2023-03-11 05:41:37] [INFO ] Time to serialize properties into /tmp/ReachabilityFireability16209099320139000039.prop : 0 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityFireability9149628367219395587.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityFireability16209099320139000039.prop' '--nowitness'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...308
Loading property file /tmp/ReachabilityFireability16209099320139000039.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 1
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :1 after 1
SDD proceeding with computation,1 properties remain. new max is 16
Link finished in 27 ms.
SDD size :1 after 1
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :1 after 1
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :1 after 1
Running LTSmin : cd /tmp/ltsmin3682231312452600151;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202303021504/bin/pins2lts-mc-linux64' './gal.so' '--threads=8' '-p' '--pins-guards' '--when' '-i' 'AngiogenesisPT50ReachabilityFireability04==true'
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :1 after 481
LTSmin run took 1507 ms.
Found Violation
FORMULA Angiogenesis-PT-50-ReachabilityFireability-04 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.
Total runtime 1842358 ms.

BK_STOP 1678513299131

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ perl -pe 's/.*\.//g'
++ sed s/.jar//
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-50, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r005-oct2-167813593000367"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;