Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r005-oct2-167813593000327.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-05, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r005-oct2-167813593000327
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 488K
-rw-r--r-- 1 mcc users 7.8K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 77K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.2K Feb 26 14:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 47K Feb 26 14:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 14K Feb 26 14:56 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 132K Feb 26 14:56 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 6.7K Feb 26 14:55 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 56K Feb 26 14:55 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1678508908651

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-05
Not applying reductions.
Model is PT
ReachabilityFireability PT
Running Version 202303021504
[2023-03-11 04:28:31] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-11 04:28:31] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-11 04:28:32] [INFO ] Load time of PNML (sax parser for PT used): 39 ms
[2023-03-11 04:28:32] [INFO ] Transformed 39 places.
[2023-03-11 04:28:32] [INFO ] Transformed 64 transitions.
[2023-03-11 04:28:32] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 143 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 11 ms.
Working with output stream class java.io.PrintStream
Initial state reduction rules removed 3 formulas.
FORMULA Angiogenesis-PT-05-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-ReachabilityFireability-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-05-ReachabilityFireability-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10000 steps, including 4 resets, run finished after 238 ms. (steps per millisecond=42 ) properties (out of 13) seen :12
FORMULA Angiogenesis-PT-05-ReachabilityFireability-14 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-12 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-09 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-07 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-05 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
[2023-03-11 04:28:32] [INFO ] Flatten gal took : 30 ms
[2023-03-11 04:28:32] [INFO ] Flatten gal took : 8 ms
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 28 ms. (steps per millisecond=357 ) properties (out of 1) seen :0
Running SMT prover for 1 properties.
[2023-03-11 04:28:32] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality9500029431450778275.gal : 6 ms
// Phase 1: matrix 64 rows 39 cols
[2023-03-11 04:28:32] [INFO ] Computed 8 place invariants in 4 ms
[2023-03-11 04:28:32] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality10400186466884030883.prop : 1 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality9500029431450778275.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality10400186466884030883.prop' '--nowitness' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...329
Loading property file /tmp/ReachabilityCardinality10400186466884030883.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :5 after 6
SDD proceeding with computation,1 properties remain. new max is 16
SDD size :6 after 59
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :59 after 168
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :168 after 2077
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :2077 after 28474
SDD proceeding with computation,1 properties remain. new max is 256
SDD size :28474 after 147452
[2023-03-11 04:28:32] [INFO ] [Real]Absence check using 8 positive place invariants in 4 ms returned sat
[2023-03-11 04:28:32] [INFO ] After 142ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:1
SDD proceeding with computation,1 properties remain. new max is 512
SDD size :2.27266e+06 after 2.46987e+06
[2023-03-11 04:28:32] [INFO ] [Nat]Absence check using 8 positive place invariants in 3 ms returned sat
[2023-03-11 04:28:32] [INFO ] After 42ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :1
[2023-03-11 04:28:32] [INFO ] After 57ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :1
Attempting to minimize the solution found.
Minimization took 13 ms.
[2023-03-11 04:28:32] [INFO ] After 150ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :1
Parikh walk visited 0 properties in 1 ms.
Support contains 14 out of 39 places. Attempting structural reductions.
Starting structural reductions in REACHABILITY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 3 place count 37 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Graph (complete) has 112 edges and 37 vertex of which 36 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Iterating post reduction 0 with 2 rules applied. Total rules applied 5 place count 36 transition count 62
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 1 with 1 rules applied. Total rules applied 6 place count 36 transition count 61
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 2 with 2 rules applied. Total rules applied 8 place count 35 transition count 61
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 2 with 1 rules applied. Total rules applied 9 place count 35 transition count 60
Drop transitions removed 1 transitions
Redundant transition composition rules discarded 1 transitions
Iterating global reduction 3 with 1 rules applied. Total rules applied 10 place count 35 transition count 59
Partial Free-agglomeration rule applied 2 times.
Drop transitions removed 2 transitions
Iterating global reduction 3 with 2 rules applied. Total rules applied 12 place count 35 transition count 59
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 3 with 1 rules applied. Total rules applied 13 place count 35 transition count 59
Applied a total of 13 rules in 35 ms. Remains 35 /39 variables (removed 4) and now considering 59/64 (removed 5) transitions.
Finished structural reductions in REACHABILITY mode , in 1 iterations and 36 ms. Remains : 35/39 places, 59/64 transitions.
Incomplete random walk after 10000 steps, including 6 resets, run finished after 10 ms. (steps per millisecond=1000 ) properties (out of 1) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 10 ms. (steps per millisecond=1000 ) properties (out of 1) seen :0
Finished probabilistic random walk after 203291 steps, run visited all 1 properties in 369 ms. (steps per millisecond=550 )
Probabilistic random walk after 203291 steps, saw 120899 distinct states, run finished after 381 ms. (steps per millisecond=533 ) properties seen :1
FORMULA Angiogenesis-PT-05-ReachabilityFireability-04 FALSE TECHNIQUES TOPOLOGICAL PROBABILISTIC_WALK
ITS runner failed with exception null
java.lang.InterruptedException
at java.base/java.lang.Object.wait(Native Method)
at java.base/java.lang.Thread.join(Thread.java:1304)
at java.base/java.lang.Thread.join(Thread.java:1372)
at fr.lip6.move.gal.application.runner.AbstractRunner.join(AbstractRunner.java:27)
at fr.lip6.move.gal.application.runner.its.ITSRunner.join(ITSRunner.java:177)
at fr.lip6.move.gal.application.solver.global.GlobalPropertySolver.verifyWithSDD(GlobalPropertySolver.java:675)
at fr.lip6.move.gal.application.solver.ReachabilitySolver.lambda$2(ReachabilitySolver.java:63)
at java.base/java.lang.Thread.run(Thread.java:833)
All properties solved without resorting to model-checking.
Total runtime 1348 ms.

BK_STOP 1678508913760

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-05, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r005-oct2-167813593000327"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;