Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r005-oct2-167813593000318.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool itstools
Input is Angiogenesis-PT-01, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r005-oct2-167813593000318
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 540K
-rw-r--r-- 1 mcc users 7.3K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 66K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.6K Feb 26 14:53 CTLFireability.txt
-rw-r--r-- 1 mcc users 38K Feb 26 14:53 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.1K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 18K Feb 26 14:53 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 175K Feb 26 14:53 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.8K Feb 26 14:53 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 80K Feb 26 14:53 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 34K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678508800360

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=itstools
BK_EXAMINATION=ReachabilityCardinality
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-01
Not applying reductions.
Model is PT
ReachabilityCardinality PT
Running Version 202303021504
[2023-03-11 04:26:42] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2023-03-11 04:26:43] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2023-03-11 04:26:43] [INFO ] Load time of PNML (sax parser for PT used): 35 ms
[2023-03-11 04:26:43] [INFO ] Transformed 39 places.
[2023-03-11 04:26:43] [INFO ] Transformed 64 transitions.
[2023-03-11 04:26:43] [INFO ] Found NUPN structural information;
[2023-03-11 04:26:43] [INFO ] Parsed PT model containing 39 places and 64 transitions and 185 arcs in 98 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 16 ms.
Working with output stream class java.io.PrintStream
Initial state reduction rules removed 10 formulas.
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-03 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-04 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-05 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-06 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-07 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-08 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-09 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-11 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-13 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-15 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10000 steps, including 2 resets, run finished after 404 ms. (steps per millisecond=24 ) properties (out of 5) seen :1
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-00 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 48 ms. (steps per millisecond=208 ) properties (out of 4) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 62 ms. (steps per millisecond=161 ) properties (out of 4) seen :0
[2023-03-11 04:26:43] [INFO ] Flatten gal took : 189 ms
[2023-03-11 04:26:43] [INFO ] Flatten gal took : 9 ms
Incomplete Best-First random walk after 10000 steps, including 5 resets, run finished after 54 ms. (steps per millisecond=185 ) properties (out of 4) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 68 ms. (steps per millisecond=147 ) properties (out of 4) seen :0
[2023-03-11 04:26:43] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality5751113787378642264.gal : 7 ms
[2023-03-11 04:26:43] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality6462298199016365659.prop : 6 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/ReachabilityCardinality5751113787378642264.gal' '-t' 'CGAL' '-reachable-file' '/tmp/ReachabilityCardinality6462298199016365659.prop' '--nowitness' '--gen-order' 'FOLLOW'
Running SMT prover for 4 properties.
// Phase 1: matrix 64 rows 39 cols
[2023-03-11 04:26:43] [INFO ] Computed 8 place invariants in 4 ms

its-reach command run as :

/home/mcc/BenchKit/itstools/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202303021504/bin/its-reach-linux64 --gc-threshold 2000000 --quiet ...328
Loading property file /tmp/ReachabilityCardinality6462298199016365659.prop.
SDD proceeding with computation,4 properties remain. new max is 4
SDD size :1 after 2
SDD proceeding with computation,4 properties remain. new max is 8
SDD size :2 after 11
SDD proceeding with computation,4 properties remain. new max is 16
SDD size :11 after 26
SDD proceeding with computation,4 properties remain. new max is 32
SDD size :26 after 43
SDD proceeding with computation,4 properties remain. new max is 64
SDD size :62 after 94
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst,110,0.035617,4048,2,284,11,1988,10,0,336,1142,0
Total reachable state count : 110

Verifying 4 reachability properties.
Reachability property Angiogenesis-PT-01-ReachabilityCardinality-01 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityCardinality-01

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityCardinality-01,0,0.037433,4048,1,0,11,1988,10,0,360,1142,0
Reachability property Angiogenesis-PT-01-ReachabilityCardinality-02 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityCardinality-02

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityCardinality-02,0,0.038821,4360,1,0,11,1988,10,0,375,1142,0
Reachability property Angiogenesis-PT-01-ReachabilityCardinality-12 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityCardinality-12

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityCardinality-12,0,0.04089,4360,1,0,11,1988,10,0,388,1142,0
Invariant property Angiogenesis-PT-01-ReachabilityCardinality-14 is true.
FORMULA Angiogenesis-PT-01-ReachabilityCardinality-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityCardinality-14,0,0.042416,4360,1,0,11,1988,10,0,400,1142,0
[2023-03-11 04:26:44] [INFO ] After 144ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:4
[2023-03-11 04:26:44] [INFO ] [Nat]Absence check using 8 positive place invariants in 15 ms returned sat
[2023-03-11 04:26:44] [INFO ] After 49ms SMT Verify possible using state equation in natural domain returned unsat :3 sat :1
[2023-03-11 04:26:44] [INFO ] Deduced a trap composed of 23 places in 68 ms of which 11 ms to minimize.
[2023-03-11 04:26:44] [INFO ] Trap strengthening procedure managed to obtain unsat after adding 1 trap constraints in 71 ms
[2023-03-11 04:26:44] [INFO ] After 137ms SMT Verify possible using trap constraints in natural domain returned unsat :4 sat :0
[2023-03-11 04:26:44] [INFO ] After 217ms SMT Verify possible using all constraints in natural domain returned unsat :4 sat :0
Fused 4 Parikh solutions to 0 different solutions.
Parikh walk visited 0 properties in 0 ms.
All properties solved without resorting to model-checking.
Total runtime 1360 ms.

BK_STOP 1678508804531

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../itstools/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//../itstools/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ export PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ PYTHONPATH=/home/mcc/BenchKit/itstools/pylibs
+ export LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
+ LD_LIBRARY_PATH=/home/mcc/BenchKit/itstools/pylibs:
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202303021504.jar
+ VERSION=202303021504
+ echo 'Running Version 202303021504'
+ /home/mcc/BenchKit/bin//../itstools/bin//..//itstools/its-tools -pnfolder /home/mcc/execution -examination ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//../itstools/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r005-oct2-167813593000318"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;