Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r004-oct2-167813591900366.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-5348
Executing tool gspn
Input is Angiogenesis-PT-50, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r004-oct2-167813591900366
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 520K
-rw-r--r-- 1 mcc users 12K Feb 26 14:53 CTLCardinality.txt
-rw-r--r-- 1 mcc users 122K Feb 26 14:53 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Feb 26 14:52 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Feb 26 14:52 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 10K Feb 26 14:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 92K Feb 26 14:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.0K Feb 26 14:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 72K Feb 26 14:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1678227714923

----------------------------------------------------------------------
GreatSPN-meddly tool, MCC 2023
----------------------------------------------------------------------

Running Angiogenesis-PT-50

IS_COLORED=
IS_NUPN=

LOADING PETRI NET FILE /home/mcc/execution/model.pnml (PNML) ...
PNML VERSION 2009, P/T NET.
COLOR CLASSES: 0
CONSTANTS: 0
PLACES: 39
TRANSITIONS: 64
COLOR VARS: 0
MEASURES: 0
LOADING TIME: [User 0.000s, Sys 0.005s]


SAVING FILE /home/mcc/execution/model (.net / .def) ...
EXPORT TIME: [User 0.000s, Sys 0.000s]


----------------------------------------------------------------------
GreatSPN/Meddly.
Copyright (C) 1987-2022, University of Torino, Italy.
website: https://github.com/greatspn/SOURCES

Based on MEDDLY version 0.16.0
Copyright (C) 2009, Iowa State University Research Foundation, Inc.
website: http://meddly.sourceforge.net

Process ID: 411
MODEL NAME: /home/mcc/execution/model
39 places, 64 transitions.

Creating all event NSFs..
Creating all event NSFs..
Creating all event NSFs..
Creating all event NSFs..
Split: SplitSubtract
Start RS construction.
Split: SplitSubtract
Start RS construction.
Split: SplitSubtract
Start RS construction.
Split: SplitSubtract
Start RS construction.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

MEDDLY ERROR: Insufficient memory

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="gspn"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool gspn"
echo " Input is Angiogenesis-PT-50, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r004-oct2-167813591900366"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;