Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2023-input.r001-oct2-167813588600351.qcow2', fmt=qcow2 cluster_size=65536 extended_l2=off compression_type=zlib size=4294967296 backing_file=/data/fkordon/mcc2023-input.qcow2 backing_fmt=qcow2 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-5348
Executing tool marcie
Input is Angiogenesis-PT-20, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r001-oct2-167813588600351
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 512K
-rw-r--r-- 1 mcc users 8.3K Feb 26 14:55 CTLCardinality.txt
-rw-r--r-- 1 mcc users 82K Feb 26 14:55 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.5K Feb 26 14:55 CTLFireability.txt
-rw-r--r-- 1 mcc users 51K Feb 26 14:55 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Jan 29 11:40 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Jan 29 11:40 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K Feb 25 15:31 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Feb 25 15:31 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K Feb 25 15:31 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Feb 25 15:31 LTLFireability.xml
-rw-r--r-- 1 mcc users 16K Feb 26 14:57 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 146K Feb 26 14:57 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.4K Feb 26 14:56 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 64K Feb 26 14:56 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Feb 25 15:31 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Feb 25 15:31 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 equiv_col
-rw-r--r-- 1 mcc users 3 Mar 5 18:22 instance
-rw-r--r-- 1 mcc users 6 Mar 5 18:22 iscolored
-rw-r--r-- 1 mcc users 33K Mar 5 18:22 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-20-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1678391600267

bash -c /home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n "BK_STOP " ; date -u +%s%3N
Invoking MCC driver with
BK_TOOL=marcie
BK_EXAMINATION=ReachabilityFireability
BK_BIN_PATH=/home/mcc/BenchKit/bin/
BK_TIME_CONFINEMENT=3600
BK_INPUT=Angiogenesis-PT-20
Not applying reductions.
Model is PT
ReachabilityFireability PT
timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie built on Linux at 2019-11-18.
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: /home/mcc/BenchKit/bin//../marcie/bin/marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --memory=6 --mcc-mode

parse successfull
net created successfully

Net: Angiogenesis_PT_20
(NrP: 39 NrTr: 64 NrArc: 185)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 3.097sec


RS generation: 36m56.771sec


-> reachability set: #nodes 2183483 (2.2e+06) #states 351,820,047,967,344,849 (17)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [k9]]
normalized: E [true U IS_FIREABLE [k9]]

MC time: 1m26.665sec

checking: EF [IS_FIREABLE [k26]]
normalized: E [true U IS_FIREABLE [k26]]

MC time: 1m23.863sec

checking: AG [~ [IS_FIREABLE [k25]]]
normalized: ~ [E [true U IS_FIREABLE [k25]]]

MC time: 1m16.711sec

checking: EF [IS_FIREABLE [k45]]
normalized: E [true U IS_FIREABLE [k45]]

MC time: 1m12.202sec

checking: AG [~ [IS_FIREABLE [k44]]]
normalized: ~ [E [true U IS_FIREABLE [k44]]]

MC time: 1m 6.132sec

checking: EF [IS_FIREABLE [k50]]
normalized: E [true U IS_FIREABLE [k50]]

MC time: 1m 3.040sec

checking: EF [[[IS_FIREABLE [k4] & IS_FIREABLE [k36]] & ~ [[IS_FIREABLE [k58] & IS_FIREABLE [k43]]]]]
normalized: E [true U [~ [[IS_FIREABLE [k58] & IS_FIREABLE [k43]]] & [IS_FIREABLE [k4] & IS_FIREABLE [k36]]]]


before gc: list nodes free: 332465

after gc: idd nodes used:5510794, unused:58489206; list nodes free:551552902
MC time: 0m59.838sec

checking: EF [[IS_FIREABLE [k30] & ~ [[~ [IS_FIREABLE [k22]] | ~ [[[~ [IS_FIREABLE [k55]] & IS_FIREABLE [k34]] & [IS_FIREABLE [k37] | [IS_FIREABLE [k45] & IS_FIREABLE [k17]]]]]]]]]
normalized: E [true U [IS_FIREABLE [k30] & ~ [[~ [[[IS_FIREABLE [k37] | [IS_FIREABLE [k45] & IS_FIREABLE [k17]]] & [IS_FIREABLE [k34] & ~ [IS_FIREABLE [k55]]]]] | ~ [IS_FIREABLE [k22]]]]]]

MC time: 0m57.369sec

checking: EF [[[[IS_FIREABLE [t1] & IS_FIREABLE [k39]] & ~ [IS_FIREABLE [k2]]] & ~ [[[IS_FIREABLE [k61] & ~ [[IS_FIREABLE [k10] & IS_FIREABLE [k30]]]] | IS_FIREABLE [k44]]]]]
normalized: E [true U [~ [[IS_FIREABLE [k44] | [IS_FIREABLE [k61] & ~ [[IS_FIREABLE [k10] & IS_FIREABLE [k30]]]]]] & [~ [IS_FIREABLE [k2]] & [IS_FIREABLE [t1] & IS_FIREABLE [k39]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-20-ReachabilityFireability-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m30.776sec

checking: EF [[[IS_FIREABLE [k29] & ~ [[[[[IS_FIREABLE [k32] & IS_FIREABLE [k43]] & IS_FIREABLE [k58]] | [~ [[IS_FIREABLE [k28] | [IS_FIREABLE [k41] | IS_FIREABLE [k5]]]] | [[[IS_FIREABLE [k5] | IS_FIREABLE [k18]] | IS_FIREABLE [k3]] & [[IS_FIREABLE [k2] & IS_FIREABLE [k5]] & ~ [IS_FIREABLE [k27]]]]]] & [[~ [IS_FIREABLE [k29]] & [~ [IS_FIREABLE [k29]] | IS_FIREABLE [k7]]] | ~ [[IS_FIREABLE [k14] | IS_FIREABLE [k51]]]]]]] | IS_FIREABLE [k52]]]
normalized: E [true U [IS_FIREABLE [k52] | [IS_FIREABLE [k29] & ~ [[[~ [[IS_FIREABLE [k14] | IS_FIREABLE [k51]]] | [[IS_FIREABLE [k7] | ~ [IS_FIREABLE [k29]]] & ~ [IS_FIREABLE [k29]]]] & [[[[~ [IS_FIREABLE [k27]] & [IS_FIREABLE [k2] & IS_FIREABLE [k5]]] & [IS_FIREABLE [k3] | [IS_FIREABLE [k5] | IS_FIREABLE [k18]]]] | ~ [[IS_FIREABLE [k28] | [IS_FIREABLE [k41] | IS_FIREABLE [k5]]]]] | [IS_FIREABLE [k58] & [IS_FIREABLE [k32] & IS_FIREABLE [k43]]]]]]]]]


before gc: list nodes free: 1309743

after gc: idd nodes used:12020913, unused:51979087; list nodes free:601898843
TIME LIMIT: Killed by timeout after 3600 seconds
MemTotal: 16393932 kB
MemFree: 154120 kB
After kill :
MemTotal: 16393932 kB
MemFree: 16259804 kB

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.000sec


iterations count:24158 (377), effective:1826 (28)

initing FirstDep: 0m 0.001sec


sat_reach.icc:155: Timeout: after 85 sec


sat_reach.icc:155: Timeout: after 80 sec


sat_reach.icc:155: Timeout: after 75 sec


sat_reach.icc:155: Timeout: after 70 sec


sat_reach.icc:155: Timeout: after 65 sec


sat_reach.icc:155: Timeout: after 61 sec


sat_reach.icc:155: Timeout: after 57 sec


sat_reach.icc:155: Timeout: after 54 sec


sat_reach.icc:155: Timeout: after 51 sec

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-5348"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-20, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r001-oct2-167813588600351"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;