Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2022-input.r323-tall-165472292900300.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2022-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool gold2021
Input is RingSingleMessageInMbox-PT-d2m005, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r323-tall-165472292900300
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 102M
-rw-r--r-- 1 mcc users 5.6K Jun 7 17:59 CTLCardinality.txt
-rw-r--r-- 1 mcc users 51K Jun 7 17:59 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.1K Jun 7 17:56 CTLFireability.txt
-rw-r--r-- 1 mcc users 39K Jun 7 17:56 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K Jun 6 15:30 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K Jun 6 15:30 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K Jun 6 15:30 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Jun 6 15:30 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 Jun 6 12:11 NewModel
-rw-r--r-- 1 mcc users 11K Jun 7 18:04 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 104K Jun 7 18:04 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Jun 7 18:02 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 35K Jun 7 18:02 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K Jun 6 15:30 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K Jun 6 15:30 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jun 6 12:11 equiv_col
-rw-r--r-- 1 mcc users 7 Jun 6 12:11 instance
-rw-r--r-- 1 mcc users 6 Jun 6 12:11 iscolored
-rw-r--r-- 1 mcc users 102M Jun 6 12:11 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-00
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-01
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-02
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-03
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-04
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-05
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-06
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-07
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-08
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-09
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-10
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-11
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-12
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-13
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-14
FORMULA_NAME RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1654787713383

Running Version 0
[2022-06-09 15:15:14] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-09 15:15:15] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-09 15:15:18] [INFO ] Load time of PNML (sax parser for PT used): 3050 ms
[2022-06-09 15:15:18] [INFO ] Transformed 66950 places.
[2022-06-09 15:15:18] [INFO ] Transformed 213625 transitions.
[2022-06-09 15:15:18] [INFO ] Parsed PT model containing 66950 places and 213625 transitions in 3535 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 37 ms.
Working with output stream class java.io.PrintStream
Deduced a syphon composed of 36863 places in 314 ms
Reduce places removed 36863 places and 0 transitions.
Interrupted random walk after 8655 steps, including 1227 resets, run timeout after 30001 ms. (steps per millisecond=0 ) properties seen :{1=1, 2=1, 3=1, 6=1, 7=1, 10=1, 12=1, 13=1, 14=1, 15=1}
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-15 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-14 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-13 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-07 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-06 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-02 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-01 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 14 resets, run finished after 307 ms. (steps per millisecond=32 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 9 resets, run finished after 236 ms. (steps per millisecond=42 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 5 resets, run finished after 218 ms. (steps per millisecond=45 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 7 resets, run finished after 205 ms. (steps per millisecond=48 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 20 resets, run finished after 394 ms. (steps per millisecond=25 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 9 resets, run finished after 272 ms. (steps per millisecond=36 ) properties (out of 6) seen :0
Running SMT prover for 6 properties.
// Phase 1: matrix 213625 rows 30087 cols
[2022-06-09 15:17:51] [WARNING] Invariant computation timed out after 120 seconds.
[2022-06-09 15:18:00] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-09 15:18:16] [WARNING] SMT solver failed with error :SMT solver raised an error when submitting script.... while checking expressions.
Fused 6 Parikh solutions to 1 different solutions.
Support contains 21 out of 30087 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 30087/30087 places, 213625/213625 transitions.
Graph (complete) has 273427 edges and 30087 vertex of which 30026 are kept as prefixes of interest. Removing 61 places using SCC suffix rule.207 ms
Discarding 61 places :
Also discarding 0 output transitions
Drop transitions removed 56 transitions
Ensure Unique test removed 300 transitions
Reduce isomorphic transitions removed 356 transitions.
Iterating post reduction 0 with 356 rules applied. Total rules applied 357 place count 30026 transition count 213269
Discarding 293 places :
Symmetric choice reduction at 1 with 293 rule applications. Total rules 650 place count 29733 transition count 71910
Iterating global reduction 1 with 293 rules applied. Total rules applied 943 place count 29733 transition count 71910
Applied a total of 943 rules in 7042 ms. Remains 29733 /30087 variables (removed 354) and now considering 71910/213625 (removed 141715) transitions.
Finished structural reductions, in 1 iterations. Remains : 29733/30087 places, 71910/213625 transitions.
[2022-06-09 15:18:27] [INFO ] Flatten gal took : 2762 ms
[2022-06-09 15:18:29] [INFO ] Flatten gal took : 2174 ms
[2022-06-09 15:18:29] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality10710568728580979510.gal : 277 ms
[2022-06-09 15:18:29] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality202055110595382330.prop : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality10710568728580979510.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality202055110595382330.prop, --nowitness, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality10710568728580979510.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality202055110595382330.prop --nowitness --gen-order FOLLOW
Detected timeout of ITS tools.
[2022-06-09 15:18:47] [INFO ] Flatten gal took : 2079 ms
[2022-06-09 15:18:47] [INFO ] Applying decomposition
[2022-06-09 15:18:49] [INFO ] Flatten gal took : 1999 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph6410440352913212314.txt, -o, /tmp/graph6410440352913212314.bin, -w, /tmp/graph6410440352913212314.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph6410440352913212314.bin, -l, -1, -v, -w, /tmp/graph6410440352913212314.weights, -q, 0, -e, 0.001], workingDir=null]
[2022-06-09 15:18:55] [INFO ] Decomposing Gal with order
[2022-06-09 15:18:58] [INFO ] Rewriting arrays to variables to allow decomposition.
[2022-06-09 15:19:58] [INFO ] Computed 5 place invariants in 247029 ms
[2022-06-09 15:22:31] [INFO ] Removed a total of 93207 redundant transitions.
[2022-06-09 15:22:47] [INFO ] Flatten gal took : 222324 ms
[2022-06-09 15:23:36] [INFO ] Fuse similar labels procedure discarded/fused a total of 60720 labels/synchronizations in 32726 ms.
[2022-06-09 15:23:36] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality14583995503733647479.gal : 511 ms
[2022-06-09 15:23:36] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality1510632639984011887.prop : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality14583995503733647479.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality1510632639984011887.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality14583995503733647479.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality1510632639984011887.prop --nowitness
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin6413963089251861538
[2022-06-09 15:23:53] [INFO ] Built C files in 712ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin6413963089251861538
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin6413963089251861538]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin6413963089251861538] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin6413963089251861538] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Interrupted random walk after 39973 steps, including 5979 resets, run timeout after 30001 ms. (steps per millisecond=1 ) properties seen :{0=1, 3=1}
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-08 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-00 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Interrupted Best-First random walk after 850930 steps, including 917 resets, run timeout after 5001 ms. (steps per millisecond=170 ) properties seen :{}
Incomplete Best-First random walk after 1000001 steps, including 877 resets, run finished after 4190 ms. (steps per millisecond=238 ) properties (out of 4) seen :1
FORMULA RingSingleMessageInMbox-PT-d2m005-ReachabilityFireability-05 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 1000001 steps, including 855 resets, run finished after 4604 ms. (steps per millisecond=217 ) properties (out of 3) seen :0
Incomplete Best-First random walk after 1000001 steps, including 1086 resets, run finished after 4405 ms. (steps per millisecond=227 ) properties (out of 3) seen :0
Running SMT prover for 3 properties.
// Phase 1: matrix 71910 rows 29733 cols
[2022-06-09 15:24:57] [INFO ] Computed 4 place invariants in 14223 ms
[2022-06-09 15:25:02] [INFO ] [Real]Absence check using 0 positive and 4 generalized place invariants in 317 ms returned sat
[2022-06-09 15:25:03] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-09 15:25:23] [INFO ] [Real]Absence check using state equation in 19730 ms returned unsat :0 sat :3 real:0

BK_STOP 1654788764613

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="RingSingleMessageInMbox-PT-d2m005"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="gold2021"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool gold2021"
echo " Input is RingSingleMessageInMbox-PT-d2m005, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r323-tall-165472292900300"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/RingSingleMessageInMbox-PT-d2m005.tgz
mv RingSingleMessageInMbox-PT-d2m005 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;