Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2022-input.r312-tall-165472282400576.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2022-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Medical-PT-12, examination is StateSpace
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r312-tall-165472282400576
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 3.5M
-rw-r--r-- 1 mcc users 6.8K Jun 7 17:38 CTLCardinality.txt
-rw-r--r-- 1 mcc users 69K Jun 7 17:38 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.0K Jun 7 17:36 CTLFireability.txt
-rw-r--r-- 1 mcc users 44K Jun 7 17:36 CTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K Jun 6 15:28 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Jun 6 15:28 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K Jun 6 15:28 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Jun 6 15:28 LTLFireability.xml
-rw-r--r-- 1 mcc users 1 Jun 6 12:11 NewModel
-rw-r--r-- 1 mcc users 12K Jun 7 17:41 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 110K Jun 7 17:41 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.9K Jun 7 17:39 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 68K Jun 7 17:39 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K Jun 6 15:28 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.7K Jun 6 15:28 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Jun 6 12:11 equiv_col
-rw-r--r-- 1 mcc users 3 Jun 6 12:11 instance
-rw-r--r-- 1 mcc users 6 Jun 6 12:11 iscolored
-rw-r--r-- 1 mcc users 3.1M Jun 6 12:11 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

no data necessary for post analysis


=== Now, execution of the tool begins

BK_START 1654889089791

Running Version 202205111006
[2022-06-10 19:24:50] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StateSpace, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-10 19:24:50] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-10 19:24:51] [INFO ] Load time of PNML (sax parser for PT used): 296 ms
[2022-06-10 19:24:51] [INFO ] Transformed 312 places.
[2022-06-10 19:24:51] [INFO ] Transformed 5431 transitions.
[2022-06-10 19:24:51] [INFO ] Parsed PT model containing 312 places and 5431 transitions in 453 ms.
Deduced a syphon composed of 242 places in 31 ms
Reduce places removed 242 places and 5204 transitions.
Reduce places removed 1 places and 0 transitions.
Starting structural reductions in STATESPACE mode, iteration 0 : 69/69 places, 227/227 transitions.
[2022-06-10 19:24:51] [INFO ] Redundant transitions in 9 ms returned []
[2022-06-10 19:24:51] [INFO ] Flow matrix only has 182 transitions (discarded 45 similar events)
// Phase 1: matrix 182 rows 69 cols
[2022-06-10 19:24:51] [INFO ] Computed 10 place invariants in 13 ms
[2022-06-10 19:24:51] [INFO ] Dead Transitions using invariants and state equation in 200 ms found 0 transitions.
Finished structural reductions, in 1 iterations. Remains : 69/69 places, 227/227 transitions.
Final net has 69 places and 227 transitions.
[2022-06-10 19:24:51] [INFO ] Flatten gal took : 57 ms
[2022-06-10 19:24:51] [INFO ] Applying decomposition
[2022-06-10 19:24:51] [INFO ] Flatten gal took : 23 ms
Converted graph to binary with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/convert-linux64' '-i' '/tmp/graph6753165600160467581.txt' '-o' '/tmp/graph6753165600160467581.bin' '-w' '/tmp/graph6753165600160467581.weights'
Built communities with : '/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202205111006/bin/louvain-linux64' '/tmp/graph6753165600160467581.bin' '-l' '-1' '-v' '-w' '/tmp/graph6753165600160467581.weights' '-q' '0' '-e' '0.001'
[2022-06-10 19:24:52] [INFO ] Decomposing Gal with order
[2022-06-10 19:24:52] [INFO ] Rewriting arrays to variables to allow decomposition.
[2022-06-10 19:24:52] [INFO ] Removed a total of 94 redundant transitions.
[2022-06-10 19:24:52] [INFO ] Flatten gal took : 60 ms
[2022-06-10 19:24:52] [INFO ] Fuse similar labels procedure discarded/fused a total of 83 labels/synchronizations in 5 ms.
[2022-06-10 19:24:52] [INFO ] Time to serialize gal into /tmp/StateSpace2979118346350817060.gal : 5 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace2979118346350817060.gal' '-t' 'CGAL' '--stats'

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp...210
Detected timeout of ITS tools.
[2022-06-10 19:44:52] [INFO ] Flatten gal took : 20 ms
[2022-06-10 19:44:52] [INFO ] Time to serialize gal into /tmp/StateSpace12085447698368912833.gal : 3 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace12085447698368912833.gal' '-t' 'CGAL' '--stats' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp...232
Detected timeout of ITS tools.
[2022-06-10 20:04:52] [INFO ] Flatten gal took : 17 ms
[2022-06-10 20:04:52] [INFO ] Input system was already deterministic with 227 transitions.
[2022-06-10 20:04:52] [INFO ] Transformed 69 places.
[2022-06-10 20:04:52] [INFO ] Transformed 227 transitions.
Running greatSPN : cd /home/mcc/execution;'/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar' '/home/mcc/execution/gspn'
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : cd /home/mcc/execution;'/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2' '/home/mcc/execution/gspn' '-META' '-varord-only'
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2022-06-10 20:04:52] [INFO ] Time to serialize gal into /tmp/StateSpace17844737946728787100.gal : 2 ms
Invoking ITS tools like this :cd /home/mcc/execution;'/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64' '--gc-threshold' '2000000' '--quiet' '-i' '/tmp/StateSpace17844737946728787100.gal' '-t' 'CGAL' '--stats' '--load-order' '/home/mcc/execution/model.ord' '--gen-order' 'FOLLOW'

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202205111006/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp...277
Successfully loaded order from file /home/mcc/execution/model.ord

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StateSpace = StateSpace ]]
+ [[ -f modelMain.xml ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution StateSpace -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination StateSpace -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Medical-PT-12"
export BK_EXAMINATION="StateSpace"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Medical-PT-12, examination is StateSpace"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r312-tall-165472282400576"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Medical-PT-12.tgz
mv Medical-PT-12 execution
cd execution
if [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "UpperBounds" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] || [ "StateSpace" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StateSpace" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StateSpace" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StateSpace.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StateSpace.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StateSpace.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StateSpace.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StateSpace" = "ReachabilityDeadlock" ] || [ "StateSpace" = "QuasiLiveness" ] || [ "StateSpace" = "StableMarking" ] || [ "StateSpace" = "Liveness" ] || [ "StateSpace" = "OneSafe" ] ; then
echo "FORMULA_NAME StateSpace"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;