Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2022-input.r089-tall-165260117700164.qcow2', fmt=qcow2 size=4294967296 backing_file=/data/fkordon/mcc2022-input.qcow2 cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool gold2021
Input is Echo-PT-d05r03, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r089-tall-165260117700164
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 2.8M
-rw-r--r-- 1 mcc users 6.3K Apr 29 11:40 CTLCardinality.txt
-rw-r--r-- 1 mcc users 66K Apr 29 11:40 CTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Apr 29 11:39 CTLFireability.txt
-rw-r--r-- 1 mcc users 59K Apr 29 11:39 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 10 09:33 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.5K May 9 07:44 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 9 07:44 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 9 07:44 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 9 07:44 LTLFireability.xml
-rw-r--r-- 1 mcc users 13K Apr 29 11:43 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 139K Apr 29 11:43 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 12K Apr 29 11:42 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 103K Apr 29 11:42 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 9 07:44 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 9 07:44 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 7 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 2.3M May 10 09:33 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-00
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-01
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-02
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-03
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-04
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-05
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-06
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-07
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-08
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-09
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-10
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-11
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-12
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-13
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-14
FORMULA_NAME Echo-PT-d05r03-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1655077197721

Running Version 0
[2022-06-12 23:39:59] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-12 23:39:59] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-12 23:39:59] [INFO ] Load time of PNML (sax parser for PT used): 296 ms
[2022-06-12 23:39:59] [INFO ] Transformed 3717 places.
[2022-06-12 23:39:59] [INFO ] Transformed 3222 transitions.
[2022-06-12 23:39:59] [INFO ] Found NUPN structural information;
[2022-06-12 23:39:59] [INFO ] Parsed PT model containing 3717 places and 3222 transitions in 393 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 19 ms.
Working with output stream class java.io.PrintStream
FORMULA Echo-PT-d05r03-ReachabilityCardinality-01 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Echo-PT-d05r03-ReachabilityCardinality-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Echo-PT-d05r03-ReachabilityCardinality-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10000 steps, including 20 resets, run finished after 454 ms. (steps per millisecond=22 ) properties (out of 13) seen :11
FORMULA Echo-PT-d05r03-ReachabilityCardinality-15 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-14 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-12 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-09 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-08 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-07 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-04 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-03 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-02 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Echo-PT-d05r03-ReachabilityCardinality-00 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 130 ms. (steps per millisecond=76 ) properties (out of 2) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 96 ms. (steps per millisecond=104 ) properties (out of 2) seen :0
Running SMT prover for 2 properties.
// Phase 1: matrix 3222 rows 3717 cols
[2022-06-12 23:40:03] [INFO ] Computed 1863 place invariants in 695 ms
[2022-06-12 23:40:04] [INFO ] [Real]Absence check using 201 positive place invariants in 121 ms returned sat
[2022-06-12 23:40:04] [INFO ] [Real]Absence check using 201 positive and 1662 generalized place invariants in 571 ms returned sat
[2022-06-12 23:40:04] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-12 23:40:08] [INFO ] [Real]Absence check using state equation in 3553 ms returned unknown
[2022-06-12 23:40:08] [INFO ] [Real]Absence check using 201 positive place invariants in 109 ms returned sat
[2022-06-12 23:40:09] [INFO ] [Real]Absence check using 201 positive and 1662 generalized place invariants in 527 ms returned sat
[2022-06-12 23:40:09] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-12 23:40:13] [INFO ] [Real]Absence check using state equation in 3814 ms returned unknown
Fused 2 Parikh solutions to 1 different solutions.
Support contains 12 out of 3717 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 3717/3717 places, 3222/3222 transitions.
Graph (complete) has 19042 edges and 3717 vertex of which 3454 are kept as prefixes of interest. Removing 263 places using SCC suffix rule.40 ms
Discarding 263 places :
Also discarding 1 output transitions
Drop transitions removed 1 transitions
Drop transitions removed 9 transitions
Reduce isomorphic transitions removed 9 transitions.
Iterating post reduction 0 with 9 rules applied. Total rules applied 10 place count 3454 transition count 3212
Reduce places removed 1 places and 1 transitions.
Iterating global reduction 1 with 1 rules applied. Total rules applied 11 place count 3453 transition count 3211
Applied a total of 11 rules in 726 ms. Remains 3453 /3717 variables (removed 264) and now considering 3211/3222 (removed 11) transitions.
Finished structural reductions, in 1 iterations. Remains : 3453/3717 places, 3211/3222 transitions.
[2022-06-12 23:40:14] [INFO ] Flatten gal took : 527 ms
[2022-06-12 23:40:15] [INFO ] Flatten gal took : 327 ms
[2022-06-12 23:40:15] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality16606438167497452048.gal : 79 ms
[2022-06-12 23:40:15] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality11995783426497612234.prop : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality16606438167497452048.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality11995783426497612234.prop, --nowitness, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality16606438167497452048.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality11995783426497612234.prop --nowitness --gen-order FOLLOW
Loading property file /tmp/ReachabilityCardinality11995783426497612234.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 3
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :3 after 9
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :9 after 19
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :19 after 59
SDD proceeding with computation,2 properties remain. new max is 64
SDD size :59 after 284
SDD proceeding with computation,2 properties remain. new max is 128
SDD size :284 after 897
Detected timeout of ITS tools.
[2022-06-12 23:40:30] [INFO ] Flatten gal took : 275 ms
[2022-06-12 23:40:30] [INFO ] Applying decomposition
[2022-06-12 23:40:31] [INFO ] Flatten gal took : 245 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph12709244676744018594.txt, -o, /tmp/graph12709244676744018594.bin, -w, /tmp/graph12709244676744018594.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph12709244676744018594.bin, -l, -1, -v, -w, /tmp/graph12709244676744018594.weights, -q, 0, -e, 0.001], workingDir=null]
[2022-06-12 23:40:37] [INFO ] Decomposing Gal with order
[2022-06-12 23:40:37] [INFO ] Rewriting arrays to variables to allow decomposition.
[2022-06-12 23:40:38] [INFO ] Removed a total of 8198 redundant transitions.
[2022-06-12 23:40:38] [INFO ] Flatten gal took : 763 ms
[2022-06-12 23:40:39] [INFO ] Fuse similar labels procedure discarded/fused a total of 908 labels/synchronizations in 247 ms.
[2022-06-12 23:40:39] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality8148337133371903570.gal : 40 ms
[2022-06-12 23:40:39] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality3299848330498309027.prop : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality8148337133371903570.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality3299848330498309027.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality8148337133371903570.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality3299848330498309027.prop --nowitness
Loading property file /tmp/ReachabilityCardinality3299848330498309027.prop.
SDD proceeding with computation,2 properties remain. new max is 4
SDD size :1 after 9
SDD proceeding with computation,2 properties remain. new max is 8
SDD size :9 after 205
SDD proceeding with computation,2 properties remain. new max is 16
SDD size :205 after 6270
SDD proceeding with computation,2 properties remain. new max is 32
SDD size :6270 after 5.45605e+07
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin4567793332405575603
[2022-06-12 23:40:54] [INFO ] Built C files in 75ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin4567793332405575603
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4567793332405575603]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4567793332405575603] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4567793332405575603] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Interrupted random walk after 695753 steps, including 1449 resets, run timeout after 30001 ms. (steps per millisecond=23 ) properties seen :{0=1}
FORMULA Echo-PT-d05r03-ReachabilityCardinality-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Interrupted Best-First random walk after 264431 steps, including 4 resets, run timeout after 5003 ms. (steps per millisecond=52 ) properties seen :{}
Running SMT prover for 1 properties.
// Phase 1: matrix 3211 rows 3453 cols
[2022-06-12 23:41:42] [INFO ] Invariants computation overflowed in 11861 ms
[2022-06-12 23:41:42] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-12 23:41:44] [INFO ] [Real]Absence check using state equation in 1593 ms returned sat
[2022-06-12 23:41:44] [INFO ] Solution in real domain found non-integer solution.
FORMULA Echo-PT-d05r03-ReachabilityCardinality-13 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 1 Parikh solutions to 0 different solutions.
All properties solved without resorting to model-checking.

BK_STOP 1655077313562

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Echo-PT-d05r03"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="gold2021"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool gold2021"
echo " Input is Echo-PT-d05r03, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r089-tall-165260117700164"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Echo-PT-d05r03.tgz
mv Echo-PT-d05r03 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;