Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2022-input.r016-tajo-165245743500223.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2022-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
...................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-25, examination is StableMarking
Time confinement is 1800 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r016-tajo-165245743500223
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 260K
-rw-r--r-- 1 mcc users 7.2K Apr 29 19:35 CTLCardinality.txt
-rw-r--r-- 1 mcc users 70K Apr 29 19:35 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.6K Apr 29 19:35 CTLFireability.txt
-rw-r--r-- 1 mcc users 54K Apr 29 19:35 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.7K May 9 07:03 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 9 07:03 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 9 07:03 LTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 9 07:03 LTLFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 9 07:03 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 9 07:03 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 3 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 33K May 10 09:33 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

FORMULA_NAME StableMarking

=== Now, execution of the tool begins

BK_START 1652772529941

Running Version 202205111006
[2022-05-17 07:28:51] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, StableMarking, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 1800]
[2022-05-17 07:28:51] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-05-17 07:28:51] [INFO ] Load time of PNML (sax parser for PT used): 60 ms
[2022-05-17 07:28:51] [INFO ] Transformed 39 places.
[2022-05-17 07:28:51] [INFO ] Transformed 64 transitions.
[2022-05-17 07:28:51] [INFO ] Parsed PT model containing 39 places and 64 transitions in 158 ms.
Incomplete random walk after 10014 steps, including 2 resets, run finished after 93 ms. (steps per millisecond=107 ) properties (out of 39) seen :31
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 41 ms. (steps per millisecond=243 ) properties (out of 8) seen :4
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 30 ms. (steps per millisecond=333 ) properties (out of 4) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 18 ms. (steps per millisecond=555 ) properties (out of 4) seen :2
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 16 ms. (steps per millisecond=625 ) properties (out of 2) seen :0
Running SMT prover for 2 properties.
// Phase 1: matrix 64 rows 39 cols
[2022-05-17 07:28:51] [INFO ] Computed 8 place invariants in 10 ms
[2022-05-17 07:28:51] [INFO ] After 110ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:2
[2022-05-17 07:28:51] [INFO ] [Nat]Absence check using 8 positive place invariants in 5 ms returned sat
[2022-05-17 07:28:51] [INFO ] After 31ms SMT Verify possible using state equation in natural domain returned unsat :0 sat :2
[2022-05-17 07:28:51] [INFO ] After 44ms SMT Verify possible using trap constraints in natural domain returned unsat :0 sat :2
Attempting to minimize the solution found.
Minimization took 15 ms.
[2022-05-17 07:28:51] [INFO ] After 109ms SMT Verify possible using all constraints in natural domain returned unsat :0 sat :2
Parikh walk visited 0 properties in 1 ms.
Support contains 2 out of 39 places. Attempting structural reductions.
Starting structural reductions in SAFETY mode, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.2 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 5 place count 36 transition count 62
Performed 10 Post agglomeration using F-continuation condition.Transition count delta: 10
Deduced a syphon composed of 10 places in 0 ms
Reduce places removed 10 places and 0 transitions.
Iterating global reduction 1 with 20 rules applied. Total rules applied 25 place count 26 transition count 52
Drop transitions removed 9 transitions
Reduce isomorphic transitions removed 9 transitions.
Graph (complete) has 78 edges and 26 vertex of which 25 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.0 ms
Discarding 1 places :
Also discarding 0 output transitions
Iterating post reduction 1 with 10 rules applied. Total rules applied 35 place count 25 transition count 43
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 2 with 1 rules applied. Total rules applied 36 place count 25 transition count 42
Performed 4 Post agglomeration using F-continuation condition.Transition count delta: -3
Deduced a syphon composed of 4 places in 0 ms
Reduce places removed 4 places and 0 transitions.
Iterating global reduction 3 with 8 rules applied. Total rules applied 44 place count 21 transition count 45
Drop transitions removed 7 transitions
Reduce isomorphic transitions removed 7 transitions.
Iterating post reduction 3 with 7 rules applied. Total rules applied 51 place count 21 transition count 38
Drop transitions removed 5 transitions
Redundant transition composition rules discarded 5 transitions
Iterating global reduction 4 with 5 rules applied. Total rules applied 56 place count 21 transition count 33
Free-agglomeration rule (complex) applied 5 times.
Iterating global reduction 4 with 5 rules applied. Total rules applied 61 place count 21 transition count 28
Reduce places removed 5 places and 0 transitions.
Drop transitions removed 3 transitions
Reduce isomorphic transitions removed 3 transitions.
Iterating post reduction 4 with 8 rules applied. Total rules applied 69 place count 16 transition count 25
Applied a total of 69 rules in 29 ms. Remains 16 /39 variables (removed 23) and now considering 25/64 (removed 39) transitions.
Finished structural reductions, in 1 iterations. Remains : 16/39 places, 25/64 transitions.
Finished random walk after 4510 steps, including 4 resets, run visited all 2 properties in 6 ms. (steps per millisecond=751 )
Able to resolve query StableMarking after proving 39 properties.
FORMULA StableMarking FALSE TECHNIQUES RANDOM_WALK BESTFIRST_WALK TOPOLOGICAL
Total runtime 720 ms.

BK_STOP 1652772531929

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ StableMarking = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution StableMarking -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination StableMarking -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 1800 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="StableMarking"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="1800"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-25, examination is StableMarking"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r016-tajo-165245743500223"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
if [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "UpperBounds" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] || [ "StableMarking" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "StableMarking" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "StableMarking" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "StableMarking.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property StableMarking.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "StableMarking.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' StableMarking.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "StableMarking" = "ReachabilityDeadlock" ] || [ "StableMarking" = "QuasiLiveness" ] || [ "StableMarking" = "StableMarking" ] || [ "StableMarking" = "Liveness" ] || [ "StableMarking" = "OneSafe" ] ; then
echo "FORMULA_NAME StableMarking"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;