About the Execution of 2021-gold for Angiogenesis-PT-15
Execution Summary | |||||
Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
252.247 | 18527.00 | 25559.00 | 83.40 | FFFFTFFTTTTTFTFF | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/mnt/tpsp/fkordon/mcc2022-input.r010-tajo-165245701700129.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2022-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool gold2021
Input is Angiogenesis-PT-15, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r010-tajo-165245701700129
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 456K
-rw-r--r-- 1 mcc users 7.8K Apr 29 19:31 CTLCardinality.txt
-rw-r--r-- 1 mcc users 73K Apr 29 19:31 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.4K Apr 29 19:30 CTLFireability.txt
-rw-r--r-- 1 mcc users 51K Apr 29 19:30 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 10 09:33 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K May 9 07:02 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 9 07:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 9 07:03 LTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 9 07:03 LTLFireability.xml
-rw-r--r-- 1 mcc users 11K Apr 29 19:32 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 104K Apr 29 19:32 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.5K Apr 29 19:31 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 66K Apr 29 19:31 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 9 07:03 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 9 07:03 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 3 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 33K May 10 09:33 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityFireability-15
=== Now, execution of the tool begins
BK_START 1655069372406
Running Version 0
[2022-06-12 21:29:34] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-12 21:29:34] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-12 21:29:34] [INFO ] Load time of PNML (sax parser for PT used): 31 ms
[2022-06-12 21:29:34] [INFO ] Transformed 39 places.
[2022-06-12 21:29:34] [INFO ] Transformed 64 transitions.
[2022-06-12 21:29:34] [INFO ] Parsed PT model containing 39 places and 64 transitions in 68 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityFireability.xml in 12 ms.
Working with output stream class java.io.PrintStream
[2022-06-12 21:29:34] [INFO ] Initial state test concluded for 1 properties.
FORMULA Angiogenesis-PT-15-ReachabilityFireability-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10010 steps, including 2 resets, run finished after 19 ms. (steps per millisecond=526 ) properties (out of 15) seen :7
FORMULA Angiogenesis-PT-15-ReachabilityFireability-14 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-12 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-10 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-06 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-05 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-01 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 34 ms. (steps per millisecond=294 ) properties (out of 8) seen :2
FORMULA Angiogenesis-PT-15-ReachabilityFireability-07 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 45 ms. (steps per millisecond=222 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 18 ms. (steps per millisecond=555 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 36 ms. (steps per millisecond=277 ) properties (out of 6) seen :3
FORMULA Angiogenesis-PT-15-ReachabilityFireability-09 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-08 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
FORMULA Angiogenesis-PT-15-ReachabilityFireability-02 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Running SMT prover for 3 properties.
// Phase 1: matrix 64 rows 39 cols
[2022-06-12 21:29:34] [INFO ] Computed 8 place invariants in 10 ms
[2022-06-12 21:29:34] [INFO ] [Real]Absence check using 8 positive place invariants in 8 ms returned sat
[2022-06-12 21:29:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-12 21:29:34] [INFO ] [Real]Absence check using state equation in 29 ms returned sat
[2022-06-12 21:29:34] [INFO ] Solution in real domain found non-integer solution.
[2022-06-12 21:29:34] [INFO ] [Nat]Absence check using 8 positive place invariants in 3 ms returned sat
[2022-06-12 21:29:34] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-06-12 21:29:34] [INFO ] [Nat]Absence check using state equation in 18 ms returned sat
[2022-06-12 21:29:34] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 7 ms.
[2022-06-12 21:29:34] [INFO ] Added : 54 causal constraints over 11 iterations in 88 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 5 ms.
[2022-06-12 21:29:34] [INFO ] [Real]Absence check using 8 positive place invariants in 3 ms returned sat
[2022-06-12 21:29:34] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-06-12 21:29:34] [INFO ] [Real]Absence check using state equation in 21 ms returned sat
[2022-06-12 21:29:34] [INFO ] Solution in real domain found non-integer solution.
[2022-06-12 21:29:35] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-06-12 21:29:35] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-06-12 21:29:35] [INFO ] [Nat]Absence check using state equation in 17 ms returned sat
[2022-06-12 21:29:35] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 9 ms.
[2022-06-12 21:29:35] [INFO ] Added : 54 causal constraints over 11 iterations in 69 ms. Result :sat
Attempting to minimize the solution found.
Minimization took 10 ms.
FORMULA Angiogenesis-PT-15-ReachabilityFireability-11 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 3 Parikh solutions to 2 different solutions.
Incomplete Parikh walk after 19800 steps, including 240 resets, run finished after 53 ms. (steps per millisecond=373 ) properties (out of 2) seen :1 could not realise parikh vector
FORMULA Angiogenesis-PT-15-ReachabilityFireability-00 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Incomplete Parikh walk after 17500 steps, including 217 resets, run finished after 27 ms. (steps per millisecond=648 ) properties (out of 1) seen :0 could not realise parikh vector
Support contains 12 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Graph (complete) has 117 edges and 39 vertex of which 38 are kept as prefixes of interest. Removing 1 places using SCC suffix rule.1 ms
Discarding 1 places :
Also discarding 0 output transitions
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 1 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 4 place count 36 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 5 place count 36 transition count 62
Performed 2 Post agglomeration using F-continuation condition.Transition count delta: 2
Deduced a syphon composed of 2 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 1 with 4 rules applied. Total rules applied 9 place count 34 transition count 60
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 1 with 1 rules applied. Total rules applied 10 place count 34 transition count 59
Drop transitions removed 2 transitions
Redundant transition composition rules discarded 2 transitions
Iterating global reduction 2 with 2 rules applied. Total rules applied 12 place count 34 transition count 57
Free-agglomeration rule applied 2 times.
Iterating global reduction 2 with 2 rules applied. Total rules applied 14 place count 34 transition count 55
Reduce places removed 2 places and 0 transitions.
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 2 with 3 rules applied. Total rules applied 17 place count 32 transition count 54
Free-agglomeration rule (complex) applied 3 times.
Iterating global reduction 3 with 3 rules applied. Total rules applied 20 place count 32 transition count 51
Reduce places removed 3 places and 0 transitions.
Drop transitions removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Iterating post reduction 3 with 5 rules applied. Total rules applied 25 place count 29 transition count 49
Free-agglomeration rule applied 1 times.
Iterating global reduction 4 with 1 rules applied. Total rules applied 26 place count 29 transition count 48
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 4 with 1 rules applied. Total rules applied 27 place count 28 transition count 48
Applied a total of 27 rules in 47 ms. Remains 28 /39 variables (removed 11) and now considering 48/64 (removed 16) transitions.
Finished structural reductions, in 1 iterations. Remains : 28/39 places, 48/64 transitions.
[2022-06-12 21:29:35] [INFO ] Flatten gal took : 27 ms
[2022-06-12 21:29:35] [INFO ] Flatten gal took : 7 ms
[2022-06-12 21:29:35] [INFO ] Time to serialize gal into /tmp/ReachabilityCardinality16917701865394856437.gal : 5 ms
[2022-06-12 21:29:35] [INFO ] Time to serialize properties into /tmp/ReachabilityCardinality2553800655053844261.prop : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/ReachabilityCardinality16917701865394856437.gal, -t, CGAL, -reachable-file, /tmp/ReachabilityCardinality2553800655053844261.prop, --nowitness, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-reach command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /tmp/ReachabilityCardinality16917701865394856437.gal -t CGAL -reachable-file /tmp/ReachabilityCardinality2553800655053844261.prop --nowitness --gen-order FOLLOW
Loading property file /tmp/ReachabilityCardinality2553800655053844261.prop.
SDD proceeding with computation,1 properties remain. new max is 4
SDD size :1 after 5
SDD proceeding with computation,1 properties remain. new max is 8
SDD size :5 after 10
SDD proceeding with computation,1 properties remain. new max is 16
SDD size :10 after 16
SDD proceeding with computation,1 properties remain. new max is 32
SDD size :16 after 256
SDD proceeding with computation,1 properties remain. new max is 64
SDD size :256 after 1559
SDD proceeding with computation,1 properties remain. new max is 128
SDD size :1559 after 44306
SDD proceeding with computation,1 properties remain. new max is 256
SDD size :44306 after 305628
SDD proceeding with computation,1 properties remain. new max is 512
SDD size :305628 after 1.35726e+06
SDD proceeding with computation,1 properties remain. new max is 1024
SDD size :1.35726e+06 after 4.6627e+06
Invariant property Angiogenesis-PT-15-ReachabilityFireability-03 does not hold.
FORMULA Angiogenesis-PT-15-ReachabilityFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING
Found states matching all0 target predicate
Will report total states built up to this point. Computation was interrupted after 1025 fixpoint passes
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
petri\_inst\_inst,2.19441e+08,1.52951,16820,2,7476,15,82128,6,0,163,68446,0
Total reachable state count : 219441448
Verifying 1 reachability properties.
Detected timeout of ITS tools.
All properties solved without resorting to model-checking.
BK_STOP 1655069390933
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="gold2021"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool gold2021"
echo " Input is Angiogenesis-PT-15, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r010-tajo-165245701700129"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
if [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "UpperBounds" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] || [ "ReachabilityFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityFireability" = "ReachabilityDeadlock" ] || [ "ReachabilityFireability" = "QuasiLiveness" ] || [ "ReachabilityFireability" = "StableMarking" ] || [ "ReachabilityFireability" = "Liveness" ] || [ "ReachabilityFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;