Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2022-input.r006-tajo-165245689200365.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2022-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-50, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r006-tajo-165245689200365
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 272K
-rw-r--r-- 1 mcc users 7.6K Apr 29 19:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 74K Apr 29 19:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.9K Apr 29 19:35 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Apr 29 19:35 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 3.9K May 9 07:03 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K May 9 07:03 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 9 07:03 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 9 07:03 LTLFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 9 07:03 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 9 07:03 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 3 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 33K May 10 09:33 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-00
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-01
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-02
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-03
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-04
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-05
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-06
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-07
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-08
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-09
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-50-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1652659953767

Running Version 202205111006
[2022-05-16 00:12:35] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-05-16 00:12:35] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-05-16 00:12:35] [INFO ] Load time of PNML (sax parser for PT used): 58 ms
[2022-05-16 00:12:35] [INFO ] Transformed 39 places.
[2022-05-16 00:12:35] [INFO ] Transformed 64 transitions.
[2022-05-16 00:12:35] [INFO ] Parsed PT model containing 39 places and 64 transitions in 158 ms.
Parsed 16 properties from file /home/mcc/execution/UpperBounds.xml in 5 ms.
// Phase 1: matrix 64 rows 39 cols
[2022-05-16 00:12:35] [INFO ] Computed 8 place invariants in 12 ms
FORMULA Angiogenesis-PT-50-UpperBounds-14 50 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-50-UpperBounds-11 50 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-50-UpperBounds-08 50 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-50-UpperBounds-04 50 TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-50-UpperBounds-00 50 TECHNIQUES TOPOLOGICAL INITIAL_STATE
Incomplete random walk after 10044 steps, including 2 resets, run finished after 18 ms. (steps per millisecond=558 ) properties (out of 11) seen :251
FORMULA Angiogenesis-PT-50-UpperBounds-15 50 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-12 50 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-10 50 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-07 50 TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-06 50 TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=909 ) properties (out of 6) seen :17
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 11 ms. (steps per millisecond=909 ) properties (out of 6) seen :13
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 8 ms. (steps per millisecond=1250 ) properties (out of 6) seen :13
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 9 ms. (steps per millisecond=1111 ) properties (out of 6) seen :10
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=1428 ) properties (out of 6) seen :30
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 7 ms. (steps per millisecond=1428 ) properties (out of 6) seen :16
// Phase 1: matrix 64 rows 39 cols
[2022-05-16 00:12:35] [INFO ] Computed 8 place invariants in 6 ms
[2022-05-16 00:12:35] [INFO ] [Real]Absence check using 8 positive place invariants in 5 ms returned sat
[2022-05-16 00:12:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:35] [INFO ] [Real]Absence check using state equation in 26 ms returned sat
[2022-05-16 00:12:35] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 8 ms.
[2022-05-16 00:12:35] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:35] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:35] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:35] [INFO ] [Nat]Absence check using state equation in 18 ms returned sat
[2022-05-16 00:12:35] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2022-05-16 00:12:35] [INFO ] Added : 55 causal constraints over 11 iterations in 65 ms. Result :sat
Minimization took 16 ms.
[2022-05-16 00:12:35] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:35] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:35] [INFO ] [Real]Absence check using state equation in 12 ms returned sat
[2022-05-16 00:12:35] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2022-05-16 00:12:35] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:35] [INFO ] [Nat]Absence check using 8 positive place invariants in 1 ms returned sat
[2022-05-16 00:12:35] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:35] [INFO ] [Nat]Absence check using state equation in 12 ms returned sat
[2022-05-16 00:12:35] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 6 ms.
[2022-05-16 00:12:35] [INFO ] Added : 55 causal constraints over 11 iterations in 67 ms. Result :sat
Minimization took 19 ms.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using state equation in 13 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2022-05-16 00:12:36] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using state equation in 17 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2022-05-16 00:12:36] [INFO ] Added : 54 causal constraints over 11 iterations in 64 ms. Result :sat
Minimization took 28 ms.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using state equation in 11 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 3 ms.
[2022-05-16 00:12:36] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using state equation in 14 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2022-05-16 00:12:36] [INFO ] Added : 55 causal constraints over 11 iterations in 58 ms. Result :sat
Minimization took 20 ms.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using state equation in 23 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 8 ms.
[2022-05-16 00:12:36] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using state equation in 14 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2022-05-16 00:12:36] [INFO ] Added : 54 causal constraints over 11 iterations in 74 ms. Result :sat
Minimization took 15 ms.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Real]Absence check using state equation in 19 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2022-05-16 00:12:36] [INFO ] Solution in real domain found non-integer solution.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using 8 positive place invariants in 2 ms returned sat
[2022-05-16 00:12:36] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2022-05-16 00:12:36] [INFO ] [Nat]Absence check using state equation in 13 ms returned sat
[2022-05-16 00:12:36] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2022-05-16 00:12:36] [INFO ] Added : 55 causal constraints over 11 iterations in 55 ms. Result :sat
Minimization took 14 ms.
Current structural bounds on expressions (after SMT) : [50, 25, 50, 25, 50, 50] Max seen :[2, 1, 8, 4, 26, 2]
FORMULA Angiogenesis-PT-50-UpperBounds-13 50 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-09 50 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-05 25 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-03 50 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-02 25 TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-UpperBounds-01 50 TECHNIQUES TOPOLOGICAL PARIKH_WALK
All properties solved without resorting to model-checking.
Total runtime 1958 ms.

BK_STOP 1652659957161

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ UpperBounds = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination UpperBounds -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-50, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r006-tajo-165245689200365"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "UpperBounds" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] || [ "UpperBounds" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "UpperBounds" = "ReachabilityDeadlock" ] || [ "UpperBounds" = "QuasiLiveness" ] || [ "UpperBounds" = "StableMarking" ] || [ "UpperBounds" = "Liveness" ] || [ "UpperBounds" = "OneSafe" ] ; then
echo "FORMULA_NAME UpperBounds"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;