Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2022-input.r006-tajo-165245689100326.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2022-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-05, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r006-tajo-165245689100326
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 500K
-rw-r--r-- 1 mcc users 8.3K Apr 29 19:25 CTLCardinality.txt
-rw-r--r-- 1 mcc users 79K Apr 29 19:25 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.9K Apr 29 19:24 CTLFireability.txt
-rw-r--r-- 1 mcc users 42K Apr 29 19:24 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 10 09:33 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.0K May 9 07:02 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K May 9 07:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 9 07:02 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 9 07:02 LTLFireability.xml
-rw-r--r-- 1 mcc users 14K Apr 29 19:26 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 123K Apr 29 19:26 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 8.3K Apr 29 19:25 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 76K Apr 29 19:25 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 9 07:02 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 9 07:02 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 3 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 33K May 10 09:33 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1654266705653

Running Version 202205111006
[2022-06-03 14:31:46] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-03 14:31:46] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-03 14:31:47] [INFO ] Load time of PNML (sax parser for PT used): 61 ms
[2022-06-03 14:31:47] [INFO ] Transformed 39 places.
[2022-06-03 14:31:47] [INFO ] Transformed 64 transitions.
[2022-06-03 14:31:47] [INFO ] Parsed PT model containing 39 places and 64 transitions in 168 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 18 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10000 steps, including 2 resets, run finished after 389 ms. (steps per millisecond=25 ) properties (out of 16) seen :8
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-15 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-14 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-11 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-09 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-05 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-03 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 52 ms. (steps per millisecond=192 ) properties (out of 8) seen :1
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-00 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 50 ms. (steps per millisecond=200 ) properties (out of 7) seen :1
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-02 TRUE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 92 ms. (steps per millisecond=108 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 56 ms. (steps per millisecond=178 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 54 ms. (steps per millisecond=185 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10000 steps, including 2 resets, run finished after 29 ms. (steps per millisecond=344 ) properties (out of 6) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 38 ms. (steps per millisecond=263 ) properties (out of 6) seen :1
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-12 FALSE TECHNIQUES TOPOLOGICAL BESTFIRST_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 78 ms. (steps per millisecond=128 ) properties (out of 5) seen :0
Running SMT prover for 5 properties.
// Phase 1: matrix 64 rows 39 cols
[2022-06-03 14:31:48] [INFO ] Computed 8 place invariants in 10 ms
[2022-06-03 14:31:48] [INFO ] After 150ms SMT Verify possible using all constraints in real domain returned unsat :0 sat :0 real:5
[2022-06-03 14:31:48] [INFO ] [Nat]Absence check using 8 positive place invariants in 3 ms returned sat
[2022-06-03 14:31:48] [INFO ] After 28ms SMT Verify possible using state equation in natural domain returned unsat :4 sat :1
[2022-06-03 14:31:48] [INFO ] After 38ms SMT Verify possible using trap constraints in natural domain returned unsat :4 sat :1
Attempting to minimize the solution found.
Minimization took 10 ms.
[2022-06-03 14:31:48] [INFO ] After 113ms SMT Verify possible using all constraints in natural domain returned unsat :4 sat :1
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-13 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-10 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-08 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-06 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 5 Parikh solutions to 1 different solutions.
Parikh walk visited 0 properties in 9 ms.
Support contains 6 out of 39 places. Attempting structural reductions.
Starting structural reductions in SAFETY mode, iteration 0 : 39/39 places, 64/64 transitions.
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 39 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 37 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 4 place count 37 transition count 62
Performed 5 Post agglomeration using F-continuation condition.Transition count delta: 5
Deduced a syphon composed of 5 places in 0 ms
Reduce places removed 5 places and 0 transitions.
Iterating global reduction 1 with 10 rules applied. Total rules applied 14 place count 32 transition count 57
Drop transitions removed 4 transitions
Reduce isomorphic transitions removed 4 transitions.
Iterating post reduction 1 with 4 rules applied. Total rules applied 18 place count 32 transition count 53
Performed 3 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 3 places in 0 ms
Reduce places removed 3 places and 0 transitions.
Iterating global reduction 2 with 6 rules applied. Total rules applied 24 place count 29 transition count 53
Drop transitions removed 5 transitions
Reduce isomorphic transitions removed 5 transitions.
Iterating post reduction 2 with 5 rules applied. Total rules applied 29 place count 29 transition count 48
Drop transitions removed 2 transitions
Redundant transition composition rules discarded 2 transitions
Iterating global reduction 3 with 2 rules applied. Total rules applied 31 place count 29 transition count 46
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Iterating post reduction 3 with 1 rules applied. Total rules applied 32 place count 29 transition count 45
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 4 with 1 rules applied. Total rules applied 33 place count 28 transition count 45
Free-agglomeration rule (complex) applied 4 times.
Iterating global reduction 5 with 4 rules applied. Total rules applied 37 place count 28 transition count 41
Reduce places removed 4 places and 0 transitions.
Drop transitions removed 4 transitions
Reduce isomorphic transitions removed 4 transitions.
Iterating post reduction 5 with 8 rules applied. Total rules applied 45 place count 24 transition count 37
Free-agglomeration rule (complex) applied 1 times.
Iterating global reduction 6 with 1 rules applied. Total rules applied 46 place count 24 transition count 36
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 6 with 1 rules applied. Total rules applied 47 place count 23 transition count 36
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 7 with 1 rules applied. Total rules applied 48 place count 23 transition count 36
Applied a total of 48 rules in 47 ms. Remains 23 /39 variables (removed 16) and now considering 36/64 (removed 28) transitions.
Finished structural reductions, in 1 iterations. Remains : 23/39 places, 36/64 transitions.
Finished random walk after 126 steps, including 0 resets, run visited all 1 properties in 1 ms. (steps per millisecond=126 )
FORMULA Angiogenesis-PT-05-ReachabilityCardinality-07 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
All properties solved without resorting to model-checking.
Total runtime 1502 ms.

BK_STOP 1654266708530

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination ReachabilityCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-05, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r006-tajo-165245689100326"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;