Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r121-tall-162075407400785.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is MAPKbis-PT-5310, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r121-tall-162075407400785
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 592K
-rw-r--r-- 1 mcc users 18K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 102K May 10 09:43 CTLCardinality.xml
-rw-r--r-- 1 mcc users 40K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 108K May 10 09:43 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.4K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.8K Apr 26 07:42 LTLCardinality.txt
-rw-r--r-- 1 mcc users 23K Apr 26 07:42 LTLCardinality.xml
-rw-r--r-- 1 mcc users 4.4K Apr 26 07:42 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 26 07:42 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Mar 27 06:05 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Mar 27 06:05 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 6.8K Mar 25 07:17 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K Mar 25 07:17 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 22 09:15 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:15 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 5 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 170K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-00
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-01
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-02
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-03
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-04
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-05
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-06
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-07
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-08
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-09
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-10
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-11
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-12
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-13
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-14
FORMULA_NAME MAPKbis-PT-5310-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1620903899261

Running Version 0
[2021-05-13 11:05:00] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-13 11:05:00] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-13 11:05:00] [INFO ] Load time of PNML (sax parser for PT used): 53 ms
[2021-05-13 11:05:00] [INFO ] Transformed 106 places.
[2021-05-13 11:05:00] [INFO ] Transformed 173 transitions.
[2021-05-13 11:05:00] [INFO ] Found NUPN structural information;
[2021-05-13 11:05:00] [INFO ] Parsed PT model containing 106 places and 173 transitions in 93 ms.
Parsed 16 properties from file /home/mcc/execution/CTLCardinality.xml in 14 ms.
Deduced a syphon composed of 11 places in 1 ms
Reduce places removed 15 places and 41 transitions.
Reduce places removed 7 places and 0 transitions.
Support contains 84 out of 84 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 84/84 places, 132/132 transitions.
Ensure Unique test removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Iterating post reduction 0 with 2 rules applied. Total rules applied 2 place count 84 transition count 130
Applied a total of 2 rules in 10 ms. Remains 84 /84 variables (removed 0) and now considering 130/132 (removed 2) transitions.
[2021-05-13 11:05:00] [INFO ] Flow matrix only has 84 transitions (discarded 46 similar events)
// Phase 1: matrix 84 rows 84 cols
[2021-05-13 11:05:00] [INFO ] Computed 42 place invariants in 8 ms
[2021-05-13 11:05:01] [INFO ] Implicit Places using invariants in 119 ms returned []
[2021-05-13 11:05:01] [INFO ] Flow matrix only has 84 transitions (discarded 46 similar events)
// Phase 1: matrix 84 rows 84 cols
[2021-05-13 11:05:01] [INFO ] Computed 42 place invariants in 8 ms
[2021-05-13 11:05:01] [INFO ] State equation strengthened by 54 read => feed constraints.
[2021-05-13 11:05:01] [INFO ] Implicit Places using invariants and state equation in 104 ms returned []
Implicit Place search using SMT with State Equation took 250 ms to find 0 implicit places.
[2021-05-13 11:05:01] [INFO ] Flow matrix only has 84 transitions (discarded 46 similar events)
// Phase 1: matrix 84 rows 84 cols
[2021-05-13 11:05:01] [INFO ] Computed 42 place invariants in 5 ms
[2021-05-13 11:05:01] [INFO ] Dead Transitions using invariants and state equation in 94 ms returned []
Finished structural reductions, in 1 iterations. Remains : 84/84 places, 130/132 transitions.
[2021-05-13 11:05:01] [INFO ] Flatten gal took : 39 ms
[2021-05-13 11:05:01] [INFO ] Flatten gal took : 14 ms
[2021-05-13 11:05:01] [INFO ] Input system was already deterministic with 130 transitions.
Incomplete random walk after 100000 steps, including 2 resets, run finished after 1115 ms. (steps per millisecond=89 ) properties (out of 66) seen :24
Running SMT prover for 42 properties.
[2021-05-13 11:05:02] [INFO ] Flow matrix only has 84 transitions (discarded 46 similar events)
// Phase 1: matrix 84 rows 84 cols
[2021-05-13 11:05:02] [INFO ] Computed 42 place invariants in 1 ms
[2021-05-13 11:05:02] [INFO ] [Real]Absence check using 42 positive place invariants in 5 ms returned sat
[2021-05-13 11:05:02] [INFO ] SMT Verify possible in real domain returnedunsat :41 sat :0 real:1
[2021-05-13 11:05:02] [INFO ] SMT Verify possible in nat domain returned unsat :1 sat :41
Successfully simplified 42 atomic propositions for a total of 16 simplifications.
[2021-05-13 11:05:02] [INFO ] Initial state test concluded for 2 properties.
FORMULA MAPKbis-PT-5310-CTLCardinality-10 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-CTLCardinality-11 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Applied a total of 0 rules in 19 ms. Remains 84 /84 variables (removed 0) and now considering 130/130 (removed 0) transitions.
[2021-05-13 11:05:02] [INFO ] Flatten gal took : 8 ms
[2021-05-13 11:05:02] [INFO ] Flatten gal took : 9 ms
[2021-05-13 11:05:02] [INFO ] Input system was already deterministic with 130 transitions.
[2021-05-13 11:05:02] [INFO ] Flatten gal took : 8 ms
[2021-05-13 11:05:02] [INFO ] Flatten gal took : 8 ms
[2021-05-13 11:05:02] [INFO ] Time to serialize gal into /tmp/CTLCardinality7888978600264025382.gal : 5 ms
[2021-05-13 11:05:02] [INFO ] Time to serialize properties into /tmp/CTLCardinality217034431749475024.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality7888978600264025382.gal, -t, CGAL, -ctl, /tmp/CTLCardinality217034431749475024.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality7888978600264025382.gal -t CGAL -ctl /tmp/CTLCardinality217034431749475024.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.84641e+12,0.569853,24072,2,285,5,95918,6,0,469,111066,0


Converting to forward existential form...Done !
original formula: !(EF(!(EF(!(EG(((((((PI3K_equals_0+PTEN_equals_1)+PPP2CA_equals_0)+PPP2CA_equals_1)+p70_equals_0)+Proliferation_equals_1)<=p53_equals_0)))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(EG(((((((PI3K_equals_0+PTEN_equals_1)+PPP2CA_equals_0)+PPP2CA_equals_1)+p70_equals_0)+Proliferation_equals_1)<=p53_equals_0))))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions t23, t24, t29, t42, t58, t67, t69, t74, t86, t87, t90, t102, t103, t106, t108, t109, t117, t118, t119, t125, t126, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/109/21/130
(forward)formula 0,1,0.72011,24456,1,0,283,95918,287,136,3219,111066,279
FORMULA MAPKbis-PT-5310-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

Applied a total of 0 rules in 11 ms. Remains 84 /84 variables (removed 0) and now considering 130/130 (removed 0) transitions.
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 19 ms
[2021-05-13 11:05:03] [INFO ] Input system was already deterministic with 130 transitions.
Finished random walk after 738 steps, including 0 resets, run visited all 1 properties in 12 ms. (steps per millisecond=61 )
FORMULA MAPKbis-PT-5310-CTLCardinality-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Applied a total of 0 rules in 7 ms. Remains 84 /84 variables (removed 0) and now considering 130/130 (removed 0) transitions.
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 6 ms
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:03] [INFO ] Input system was already deterministic with 130 transitions.
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:03] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:03] [INFO ] Time to serialize gal into /tmp/CTLCardinality10987697368343085366.gal : 2 ms
[2021-05-13 11:05:03] [INFO ] Time to serialize properties into /tmp/CTLCardinality4723949210715012391.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality10987697368343085366.gal, -t, CGAL, -ctl, /tmp/CTLCardinality4723949210715012391.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality10987697368343085366.gal -t CGAL -ctl /tmp/CTLCardinality4723949210715012391.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.84641e+12,0.572509,24136,2,285,5,95918,6,0,469,111066,0


Converting to forward existential form...Done !
original formula: AG(!(AG((((((MAX_equals_1+1)+ERK_equals_1)+PLCG_equals_1)+p53_equals_1)<=(((1+MYC_equals_0)+ATF2_equals_1)+1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((((((MAX_equals_1+1)+ERK_equals_1)+PLCG_equals_1)+p53_equals_1)<=(((1+MYC_equals_0)+ATF2_equals_1)+1))))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions t23, t24, t29, t42, t58, t67, t69, t74, t86, t87, t90, t102, t103, t106, t108, t109, t117, t118, t119, t125, t126, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/109/21/130
(forward)formula 0,1,1.1249,34164,1,0,289,160045,282,139,3096,181777,288
FORMULA MAPKbis-PT-5310-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

Applied a total of 0 rules in 6 ms. Remains 84 /84 variables (removed 0) and now considering 130/130 (removed 0) transitions.
[2021-05-13 11:05:05] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 8 ms
FORMULA MAPKbis-PT-5310-CTLCardinality-08 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:05] [INFO ] Input system was already deterministic with 130 transitions.
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 7 ms
[2021-05-13 11:05:05] [INFO ] Initial state reduction rules for CTL removed 2 formulas.
FORMULA MAPKbis-PT-5310-CTLCardinality-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-CTLCardinality-01 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 31 ms
[2021-05-13 11:05:05] [INFO ] Applying decomposition
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph17583462671954828258.txt, -o, /tmp/graph17583462671954828258.bin, -w, /tmp/graph17583462671954828258.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph17583462671954828258.bin, -l, -1, -v, -w, /tmp/graph17583462671954828258.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-13 11:05:05] [INFO ] Decomposing Gal with order
[2021-05-13 11:05:05] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-13 11:05:05] [INFO ] Removed a total of 130 redundant transitions.
[2021-05-13 11:05:05] [INFO ] Flatten gal took : 57 ms
[2021-05-13 11:05:05] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 5 ms.
[2021-05-13 11:05:05] [INFO ] Time to serialize gal into /tmp/CTLCardinality5198592205633769949.gal : 4 ms
[2021-05-13 11:05:05] [INFO ] Time to serialize properties into /tmp/CTLCardinality17184702508939636647.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLCardinality5198592205633769949.gal, -t, CGAL, -ctl, /tmp/CTLCardinality17184702508939636647.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLCardinality5198592205633769949.gal -t CGAL -ctl /tmp/CTLCardinality17184702508939636647.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 8 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.84641e+12,0.737436,29824,2,769,5,131776,6,0,469,138773,0


Converting to forward existential form...Done !
original formula: EX((AG(AF(EX(TRUE))) + ((((gi1.gu4.MAX_equals_0+gi1.gu4.ATF2_equals_1)+1)+gi1.gu4.GADD45_equals_0)<=(2+gi1.gu4.ELK1_equals_1))))
=> equivalent forward existential formula: ([(EY(Init) * !(E(TRUE U !(!(EG(!(EX(TRUE))))))))] != FALSE + [(EY(Init) * ((((gi1.gu4.MAX_equals_0+gi1.gu4.ATF2_equals_1)+1)+gi1.gu4.GADD45_equals_0)<=(2+gi1.gu4.ELK1_equals_1)))] != FALSE)
Reverse transition relation is NOT exact ! Due to transitions gi1.t108, t23, t24, t29, t42, t58, t67, t69, t74, t86, t87, t90, t102, t103, t106, t109, t117, t118, t119, t125, t126, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/109/21/130
(forward)formula 0,1,1.02095,29824,1,0,279,131776,285,135,3121,145813,269
FORMULA MAPKbis-PT-5310-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(!(EF(AX(FALSE))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(EX(!(FALSE))))))] != FALSE
(forward)formula 1,1,1.02104,29824,1,0,279,131776,285,135,3121,145813,269
FORMULA MAPKbis-PT-5310-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: AG(((!(AX(((((gi0.gu9.p70_equals_0+1)<=gi0.gu9.ERK_equals_1)||(((gi1.gu2.FOXO3_equals_1+1)+1)<=9))&&((((((gi1.gu2.SPRY_equals_0+gi1.gu4.MAX_equals_1)+gu5.DUSP1_equals_0)+gu5.EGFR_equals_0)+gi1.gu4.MYC_equals_1)<=((gi1.gu4.MAX_equals_0+gi1.gu4.GRB2_equals_0)+gu6.MTK1_equals_1))||(((((((((gu5.RAF_equals_1+gi0.gu1.MDM2_equals_0)+gu5.PTEN_equals_0)+gi0.gu3.RAF_equals_0)+gi0.gu3.GAB1_equals_0)+gi0.gu7.AKT_0)+gu6.MEK1_2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu4.MYC_equals_1)>=19))))) + ((((((gi1.gu4.p38_equals_1+gi1.gu4.DUSP1_equals_1)+gi1.gu4.MAX_equals_0)+gu5.p53_equals_0)+1)+gu6.MAP3K1_3_equals_0)>(((gu6.Proliferation_equals_1+gi1.gu4.ATF2_equals_1)+1)+gi1.gu4.MYC_equals_1))) + ((((((((gu6.Apoptosis_equals_1+gu6.FOXO3_equals_0)+gu6.PPP2CA_equals_1)+gu6.Proliferation_equals_0)+gu6.BCL2_equals_1)+gu6.MEK1_2_equals_1)+gu6.PTEN_equals_1)+gu6.GADD45_equals_1)>((((((((gu6.p70_equals_1+gi1.gu2.FOS_equals_1)+gu6.CREB_equals_1)+gu6.MTK1_equals_1)+1)+gu6.GAB1_equals_1)+1)+gu6.MAP3K1_3_equals_0)+gu6.RSK_equals_1))))
=> equivalent forward existential formula: [(((FwdU(Init,TRUE) * !(((((((((gu6.Apoptosis_equals_1+gu6.FOXO3_equals_0)+gu6.PPP2CA_equals_1)+gu6.Proliferation_equals_0)+gu6.BCL2_equals_1)+gu6.MEK1_2_equals_1)+gu6.PTEN_equals_1)+gu6.GADD45_equals_1)>((((((((gu6.p70_equals_1+gi1.gu2.FOS_equals_1)+gu6.CREB_equals_1)+gu6.MTK1_equals_1)+1)+gu6.GAB1_equals_1)+1)+gu6.MAP3K1_3_equals_0)+gu6.RSK_equals_1)))) * !(((((((gi1.gu4.p38_equals_1+gi1.gu4.DUSP1_equals_1)+gi1.gu4.MAX_equals_0)+gu5.p53_equals_0)+1)+gu6.MAP3K1_3_equals_0)>(((gu6.Proliferation_equals_1+gi1.gu4.ATF2_equals_1)+1)+gi1.gu4.MYC_equals_1)))) * !(EX(!(((((gi0.gu9.p70_equals_0+1)<=gi0.gu9.ERK_equals_1)||(((gi1.gu2.FOXO3_equals_1+1)+1)<=9))&&((((((gi1.gu2.SPRY_equals_0+gi1.gu4.MAX_equals_1)+gu5.DUSP1_equals_0)+gu5.EGFR_equals_0)+gi1.gu4.MYC_equals_1)<=((gi1.gu4.MAX_equals_0+gi1.gu4.GRB2_equals_0)+gu6.MTK1_equals_1))||(((((((((gu5.RAF_equals_1+gi0.gu1.MDM2_equals_0)+gu5.PTEN_equals_0)+gi0.gu3.RAF_equals_0)+gi0.gu3.GAB1_equals_0)+gi0.gu7.AKT_0)+gu6.MEK1_2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu4.MYC_equals_1)>=19)))))))] = FALSE
(forward)formula 2,0,1.68183,50272,1,0,291,249152,291,143,4465,374932,276
FORMULA MAPKbis-PT-5310-CTLCardinality-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: AG(!(AX(FALSE)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!(FALSE))))] = FALSE
(forward)formula 3,1,1.68191,50272,1,0,291,249152,291,143,4465,374932,276
FORMULA MAPKbis-PT-5310-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: (AX(((EX(TRUE) + ((((((1+gu5.p53_equals_0)+gu5.RAF_equals_1)+gu6.BCL2_equals_1)+gu5.PI3K_equals_0)+gu5.MEK1_2_equals_0)>39)) + ((gi1.gu2.SPRY_equals_0+gi1.gu2.SOS_equals_1)<=1))) * (AG(((((EX(((((((1+gu6.BCL2_equals_1)+gu6.JNK_equals_1)+gu6.Proliferation_equals_1)+1)+gu5.PDK1_equals_0)<=((((1+gu6.MTK1_equals_1)+gi0.gu7.RAS_equals_0)+gi0.gu7.ERK_equals_0)+gi0.gu7.AKT_0))) * (((((((((gu5.RAF_equals_1+gu5.EGFR_equals_0)+gu5.MSK_equals_1)+gu5.PTEN_equals_0)+gu5.DUSP1_equals_0)+gu5.p53_equals_0)+gu5.MAP3K1_3_equals_1)+gu5.PKC_equals_0)+gu5.RAS_equals_1)<=(((((((gu5.AP1_equals_1+gu5.CREB_equals_0)+1)+gu5.PDK1_equals_0)+gu5.PI3K_equals_0)+gu5.MEK1_2_equals_0)+gu5.EGFR_equals_0)+gu5.p21_equals_1))) * (gu6.PTEN_equals_1<=((((((gi0.gu0.GRB2_equals_1+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu5.RAS_equals_1)+gu6.Apoptosis_equals_0)+gu5.AP1_equals_1)+gu5.PTEN_equals_0))) + EF(((((((((gu6.MTK1_equals_1+1)+gu8.p21_equals_0)+gu8.FOS_equals_0)+gu8.PI3K_equals_1)+gu8.AKT_equals_1)+gu5.PTEN_equals_0)<=23)&&((((((((gi1.gu2.MSK_equals_0+gi1.gu2.p14_equals_0)+gi1.gu4.MAX_equals_0)+1)+gu5.CREB_equals_0)+gi1.gu2.Growth_Arrest_equals_1)+gu6.Apoptosis_equals_1)+gi1.gu2.FOXO3_equals_1)<=((((((gi1.gu4.MYC_equals_1+gi1.gu2.FOS_equals_1)+gi1.gu2.SPRY_equals_0)+gu5.DUSP1_equals_0)+gu6.MDM2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu2.p14_equals_0))))) + EX(EX(TRUE)))) + E((AG(EF(((((((((((gu6.JUN_equals_0+gu6.MTK1_equals_1)+gu6.ATF2_equals_0)+gu6.JNK_equals_1)+gu5.PKC_equals_0)+gu6.SPRY_equals_1)+gu6.Apoptosis_equals_1)+gu6.EGFR_equals_1)+gu6.Apoptosis_equals_0)+gu6.RSK_equals_0)<=((((((((gu6.RSK_equals_0+gu6.JUN_equals_0)+gu6.Proliferation_equals_1)+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu6.MDM2_equals_1)+gu6.PLCG_equals_0)+1)+gu6.p70_equals_1)))) * (((((gi0.gu1.ELK1_equals_0+gi0.gu1.MDM2_equals_0)+gi0.gu1.PPP2CA_equals_0)+gi0.gu1.MYC_equals_0)+gu6.Apoptosis_equals_1)<=(gu5.p21_equals_1+gi0.gu1.PKC_equals_1))) U !(EF(EX(TRUE))))))
=> equivalent forward existential formula: ([(((EY(Init) * !(((gi1.gu2.SPRY_equals_0+gi1.gu2.SOS_equals_1)<=1))) * !(((((((1+gu5.p53_equals_0)+gu5.RAF_equals_1)+gu6.BCL2_equals_1)+gu5.PI3K_equals_0)+gu5.MEK1_2_equals_0)>39))) * !(EX(TRUE)))] = FALSE * (([(((FwdU((Init * !(E((!(E(TRUE U !(E(TRUE U ((((((((((gu6.JUN_equals_0+gu6.MTK1_equals_1)+gu6.ATF2_equals_0)+gu6.JNK_equals_1)+gu5.PKC_equals_0)+gu6.SPRY_equals_1)+gu6.Apoptosis_equals_1)+gu6.EGFR_equals_1)+gu6.Apoptosis_equals_0)+gu6.RSK_equals_0)<=((((((((gu6.RSK_equals_0+gu6.JUN_equals_0)+gu6.Proliferation_equals_1)+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu6.MDM2_equals_1)+gu6.PLCG_equals_0)+1)+gu6.p70_equals_1)))))) * (((((gi0.gu1.ELK1_equals_0+gi0.gu1.MDM2_equals_0)+gi0.gu1.PPP2CA_equals_0)+gi0.gu1.MYC_equals_0)+gu6.Apoptosis_equals_1)<=(gu5.p21_equals_1+gi0.gu1.PKC_equals_1))) U !(E(TRUE U EX(TRUE)))))),TRUE) * !(EX(EX(TRUE)))) * !(E(TRUE U ((((((((gu6.MTK1_equals_1+1)+gu8.p21_equals_0)+gu8.FOS_equals_0)+gu8.PI3K_equals_1)+gu8.AKT_equals_1)+gu5.PTEN_equals_0)<=23)&&((((((((gi1.gu2.MSK_equals_0+gi1.gu2.p14_equals_0)+gi1.gu4.MAX_equals_0)+1)+gu5.CREB_equals_0)+gi1.gu2.Growth_Arrest_equals_1)+gu6.Apoptosis_equals_1)+gi1.gu2.FOXO3_equals_1)<=((((((gi1.gu4.MYC_equals_1+gi1.gu2.FOS_equals_1)+gi1.gu2.SPRY_equals_0)+gu5.DUSP1_equals_0)+gu6.MDM2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu2.p14_equals_0)))))) * !(EX(((((((1+gu6.BCL2_equals_1)+gu6.JNK_equals_1)+gu6.Proliferation_equals_1)+1)+gu5.PDK1_equals_0)<=((((1+gu6.MTK1_equals_1)+gi0.gu7.RAS_equals_0)+gi0.gu7.ERK_equals_0)+gi0.gu7.AKT_0)))))] = FALSE * [(((FwdU((Init * !(E((!(E(TRUE U !(E(TRUE U ((((((((((gu6.JUN_equals_0+gu6.MTK1_equals_1)+gu6.ATF2_equals_0)+gu6.JNK_equals_1)+gu5.PKC_equals_0)+gu6.SPRY_equals_1)+gu6.Apoptosis_equals_1)+gu6.EGFR_equals_1)+gu6.Apoptosis_equals_0)+gu6.RSK_equals_0)<=((((((((gu6.RSK_equals_0+gu6.JUN_equals_0)+gu6.Proliferation_equals_1)+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu6.MDM2_equals_1)+gu6.PLCG_equals_0)+1)+gu6.p70_equals_1)))))) * (((((gi0.gu1.ELK1_equals_0+gi0.gu1.MDM2_equals_0)+gi0.gu1.PPP2CA_equals_0)+gi0.gu1.MYC_equals_0)+gu6.Apoptosis_equals_1)<=(gu5.p21_equals_1+gi0.gu1.PKC_equals_1))) U !(E(TRUE U EX(TRUE)))))),TRUE) * !(EX(EX(TRUE)))) * !(E(TRUE U ((((((((gu6.MTK1_equals_1+1)+gu8.p21_equals_0)+gu8.FOS_equals_0)+gu8.PI3K_equals_1)+gu8.AKT_equals_1)+gu5.PTEN_equals_0)<=23)&&((((((((gi1.gu2.MSK_equals_0+gi1.gu2.p14_equals_0)+gi1.gu4.MAX_equals_0)+1)+gu5.CREB_equals_0)+gi1.gu2.Growth_Arrest_equals_1)+gu6.Apoptosis_equals_1)+gi1.gu2.FOXO3_equals_1)<=((((((gi1.gu4.MYC_equals_1+gi1.gu2.FOS_equals_1)+gi1.gu2.SPRY_equals_0)+gu5.DUSP1_equals_0)+gu6.MDM2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu2.p14_equals_0)))))) * !((((((((((gu5.RAF_equals_1+gu5.EGFR_equals_0)+gu5.MSK_equals_1)+gu5.PTEN_equals_0)+gu5.DUSP1_equals_0)+gu5.p53_equals_0)+gu5.MAP3K1_3_equals_1)+gu5.PKC_equals_0)+gu5.RAS_equals_1)<=(((((((gu5.AP1_equals_1+gu5.CREB_equals_0)+1)+gu5.PDK1_equals_0)+gu5.PI3K_equals_0)+gu5.MEK1_2_equals_0)+gu5.EGFR_equals_0)+gu5.p21_equals_1))))] = FALSE) * [(((FwdU((Init * !(E((!(E(TRUE U !(E(TRUE U ((((((((((gu6.JUN_equals_0+gu6.MTK1_equals_1)+gu6.ATF2_equals_0)+gu6.JNK_equals_1)+gu5.PKC_equals_0)+gu6.SPRY_equals_1)+gu6.Apoptosis_equals_1)+gu6.EGFR_equals_1)+gu6.Apoptosis_equals_0)+gu6.RSK_equals_0)<=((((((((gu6.RSK_equals_0+gu6.JUN_equals_0)+gu6.Proliferation_equals_1)+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu6.MDM2_equals_1)+gu6.PLCG_equals_0)+1)+gu6.p70_equals_1)))))) * (((((gi0.gu1.ELK1_equals_0+gi0.gu1.MDM2_equals_0)+gi0.gu1.PPP2CA_equals_0)+gi0.gu1.MYC_equals_0)+gu6.Apoptosis_equals_1)<=(gu5.p21_equals_1+gi0.gu1.PKC_equals_1))) U !(E(TRUE U EX(TRUE)))))),TRUE) * !(EX(EX(TRUE)))) * !(E(TRUE U ((((((((gu6.MTK1_equals_1+1)+gu8.p21_equals_0)+gu8.FOS_equals_0)+gu8.PI3K_equals_1)+gu8.AKT_equals_1)+gu5.PTEN_equals_0)<=23)&&((((((((gi1.gu2.MSK_equals_0+gi1.gu2.p14_equals_0)+gi1.gu4.MAX_equals_0)+1)+gu5.CREB_equals_0)+gi1.gu2.Growth_Arrest_equals_1)+gu6.Apoptosis_equals_1)+gi1.gu2.FOXO3_equals_1)<=((((((gi1.gu4.MYC_equals_1+gi1.gu2.FOS_equals_1)+gi1.gu2.SPRY_equals_0)+gu5.DUSP1_equals_0)+gu6.MDM2_equals_1)+gu5.MEK1_2_equals_0)+gi1.gu2.p14_equals_0)))))) * !((gu6.PTEN_equals_1<=((((((gi0.gu0.GRB2_equals_1+gu6.PPP2CA_equals_1)+gi1.gu4.MYC_equals_1)+gu5.RAS_equals_1)+gu6.Apoptosis_equals_0)+gu5.AP1_equals_1)+gu5.PTEN_equals_0))))] = FALSE))
(forward)formula 4,1,10.0388,290380,1,0,311,1.43166e+06,299,153,6069,1.81859e+06,302
FORMULA MAPKbis-PT-5310-CTLCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EX(EF(((((((gi0.gu7.AKT_0+1)+gi1.gu2.p14_equals_0)+gi1.gu2.FOS_equals_1)+gu5.PTEN_equals_0)<=((gi1.gu4.DUSP1_equals_1+gi1.gu4.MYC_equals_1)+1))&&((((((gu6.RSK_equals_1+gi0.gu0.BCL2_equals_0)+gi0.gu0.p14_equals_1)+gu5.p53_equals_0)+gi0.gu0.AP1_equals_0)+gi0.gu0.PLCG_equals_1)<=(((gu6.MAP3K1_3_equals_0+gi0.gu0.AP1_equals_0)+gi0.gu1.MYC_equals_0)+gu5.RAF_equals_1)))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * ((((((gi0.gu7.AKT_0+1)+gi1.gu2.p14_equals_0)+gi1.gu2.FOS_equals_1)+gu5.PTEN_equals_0)<=((gi1.gu4.DUSP1_equals_1+gi1.gu4.MYC_equals_1)+1))&&((((((gu6.RSK_equals_1+gi0.gu0.BCL2_equals_0)+gi0.gu0.p14_equals_1)+gu5.p53_equals_0)+gi0.gu0.AP1_equals_0)+gi0.gu0.PLCG_equals_1)<=(((gu6.MAP3K1_3_equals_0+gi0.gu0.AP1_equals_0)+gi0.gu1.MYC_equals_0)+gu5.RAF_equals_1))))] != FALSE
(forward)formula 5,1,11.0997,318228,1,0,313,1.54802e+06,301,154,6317,1.94412e+06,305
FORMULA MAPKbis-PT-5310-CTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EX(TRUE)
=> equivalent forward existential formula: [(EY(Init) * TRUE)] != FALSE
(forward)formula 6,1,11.0998,318228,1,0,313,1.54802e+06,301,154,6317,1.94412e+06,305
FORMULA MAPKbis-PT-5310-CTLCardinality-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EX(((((((gi0.gu0.AP1_equals_0+gi0.gu0.Growth_Arrest_equals_0)+gi0.gu0.GRB2_equals_1)+gi0.gu0.PLCG_equals_1)+1)<=gu5.MEK1_2_equals_0)||(((1+gu6.MTK1_equals_1)+gu6.MDM2_equals_1)<=(((((((gi0.gu9.p70_equals_0+gu6.Apoptosis_equals_1)+gi0.gu1.PPP2CA_equals_0)+gu6.FOXO3_equals_0)+gi0.gu7.AKT_0)+gi0.gu9.JNK_equals_0)+gi0.gu0.PLCG_equals_1)+1))))
=> equivalent forward existential formula: [(EY(Init) * ((((((gi0.gu0.AP1_equals_0+gi0.gu0.Growth_Arrest_equals_0)+gi0.gu0.GRB2_equals_1)+gi0.gu0.PLCG_equals_1)+1)<=gu5.MEK1_2_equals_0)||(((1+gu6.MTK1_equals_1)+gu6.MDM2_equals_1)<=(((((((gi0.gu9.p70_equals_0+gu6.Apoptosis_equals_1)+gi0.gu1.PPP2CA_equals_0)+gu6.FOXO3_equals_0)+gi0.gu7.AKT_0)+gi0.gu9.JNK_equals_0)+gi0.gu0.PLCG_equals_1)+1))))] != FALSE
(forward)formula 7,1,11.1232,319020,1,0,315,1.55008e+06,302,155,6438,1.9455e+06,306
FORMULA MAPKbis-PT-5310-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************


BK_STOP 1620903917451

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5310, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r121-tall-162075407400785"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
if [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "UpperBounds" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] || [ "CTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "CTLCardinality" = "ReachabilityDeadlock" ] || [ "CTLCardinality" = "QuasiLiveness" ] || [ "CTLCardinality" = "StableMarking" ] || [ "CTLCardinality" = "Liveness" ] || [ "CTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;