About the Execution of ITS-Tools for Angiogenesis-PT-25
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 13717.848 | 3600000.00 | 3525909.00 | 45306.70 | [undef] | Time out reached |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2021-input.r007-tall-162037989900356.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-25, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-162037989900356
=====================================================================
--------------------
preparation of the directory to be used:
/home/mcc/execution
total 468K
-rw-r--r-- 1 mcc users 21K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 152K May 10 09:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 11K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 100K May 10 09:42 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.0K Apr 26 07:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K Apr 26 07:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K Apr 26 07:41 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K Apr 26 07:41 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Mar 23 01:46 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K Mar 23 01:46 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.9K Mar 22 10:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K Mar 22 10:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K Mar 22 09:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:09 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 33K May 5 16:51 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-25-CTLFireability-15
=== Now, execution of the tool begins
BK_START 1620745879156
Running Version 0
[2021-05-11 15:11:20] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-11 15:11:20] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-11 15:11:20] [INFO ] Load time of PNML (sax parser for PT used): 34 ms
[2021-05-11 15:11:20] [INFO ] Transformed 39 places.
[2021-05-11 15:11:20] [INFO ] Transformed 64 transitions.
[2021-05-11 15:11:20] [INFO ] Parsed PT model containing 39 places and 64 transitions in 69 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 15 ms.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 2 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 15:11:20] [INFO ] Reduced 1 identical enabling conditions.
Support contains 38 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Applied a total of 1 rules in 9 ms. Remains 38 /39 variables (removed 1) and now considering 64/64 (removed 0) transitions.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 15:11:21] [INFO ] Computed 7 place invariants in 6 ms
[2021-05-11 15:11:21] [INFO ] Implicit Places using invariants in 78 ms returned []
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 15:11:21] [INFO ] Computed 7 place invariants in 2 ms
[2021-05-11 15:11:21] [INFO ] Implicit Places using invariants and state equation in 54 ms returned []
Implicit Place search using SMT with State Equation took 158 ms to find 0 implicit places.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 15:11:21] [INFO ] Computed 7 place invariants in 3 ms
[2021-05-11 15:11:21] [INFO ] Dead Transitions using invariants and state equation in 43 ms returned []
Finished structural reductions, in 1 iterations. Remains : 38/39 places, 64/64 transitions.
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 30 ms
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 12 ms
[2021-05-11 15:11:21] [INFO ] Input system was already deterministic with 64 transitions.
Finished random walk after 44389 steps, including 2 resets, run visited all 97 properties in 46 ms. (steps per millisecond=964 )
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Applied a total of 1 rules in 15 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 5 ms
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 5 ms
[2021-05-11 15:11:21] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:11:21] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:11:21] [INFO ] Time to serialize gal into /tmp/CTLFireability9620296117320693460.gal : 2 ms
[2021-05-11 15:11:21] [INFO ] Time to serialize properties into /tmp/CTLFireability13123836378094636261.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability9620296117320693460.gal, -t, CGAL, -ctl, /tmp/CTLFireability13123836378094636261.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability9620296117320693460.gal -t CGAL -ctl /tmp/CTLFireability13123836378094636261.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:11:51] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:11:51] [INFO ] Applying decomposition
[2021-05-11 15:11:51] [INFO ] Flatten gal took : 15 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph10006949068361854975.txt, -o, /tmp/graph10006949068361854975.bin, -w, /tmp/graph10006949068361854975.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph10006949068361854975.bin, -l, -1, -v, -w, /tmp/graph10006949068361854975.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 15:11:51] [INFO ] Decomposing Gal with order
[2021-05-11 15:11:51] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 15:11:51] [INFO ] Removed a total of 40 redundant transitions.
[2021-05-11 15:11:51] [INFO ] Flatten gal took : 29 ms
[2021-05-11 15:11:51] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 3 ms.
[2021-05-11 15:11:51] [INFO ] Time to serialize gal into /tmp/CTLFireability8611252217610731.gal : 3 ms
[2021-05-11 15:11:51] [INFO ] Time to serialize properties into /tmp/CTLFireability3585431001570054798.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability8611252217610731.gal, -t, CGAL, -ctl, /tmp/CTLFireability3585431001570054798.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability8611252217610731.gal -t CGAL -ctl /tmp/CTLFireability3585431001570054798.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Partial Post-agglomeration rule applied 3 times.
Drop transitions removed 3 transitions
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 38 transition count 64
Applied a total of 3 rules in 6 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2021-05-11 15:12:21] [INFO ] Flatten gal took : 7 ms
[2021-05-11 15:12:21] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:12:21] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:12:21] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:12:21] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:12:21] [INFO ] Time to serialize gal into /tmp/CTLFireability10608367983491468652.gal : 1 ms
[2021-05-11 15:12:21] [INFO ] Time to serialize properties into /tmp/CTLFireability9449022393836883186.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability10608367983491468652.gal, -t, CGAL, -ctl, /tmp/CTLFireability9449022393836883186.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability10608367983491468652.gal -t CGAL -ctl /tmp/CTLFireability9449022393836883186.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:12:52] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:12:52] [INFO ] Applying decomposition
[2021-05-11 15:12:52] [INFO ] Flatten gal took : 23 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph14606486015624004470.txt, -o, /tmp/graph14606486015624004470.bin, -w, /tmp/graph14606486015624004470.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph14606486015624004470.bin, -l, -1, -v, -w, /tmp/graph14606486015624004470.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 15:12:52] [INFO ] Decomposing Gal with order
[2021-05-11 15:12:52] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 15:12:52] [INFO ] Removed a total of 41 redundant transitions.
[2021-05-11 15:12:52] [INFO ] Flatten gal took : 8 ms
[2021-05-11 15:12:52] [INFO ] Fuse similar labels procedure discarded/fused a total of 4 labels/synchronizations in 2 ms.
[2021-05-11 15:12:52] [INFO ] Time to serialize gal into /tmp/CTLFireability4735527891441617401.gal : 2 ms
[2021-05-11 15:12:52] [INFO ] Time to serialize properties into /tmp/CTLFireability4542975464849650570.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability4735527891441617401.gal, -t, CGAL, -ctl, /tmp/CTLFireability4542975464849650570.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability4735527891441617401.gal -t CGAL -ctl /tmp/CTLFireability4542975464849650570.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 36 transition count 63
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 1
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 5 place count 35 transition count 62
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 6 place count 35 transition count 62
Applied a total of 6 rules in 6 ms. Remains 35 /38 variables (removed 3) and now considering 62/64 (removed 2) transitions.
[2021-05-11 15:13:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:13:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:13:22] [INFO ] Input system was already deterministic with 62 transitions.
[2021-05-11 15:13:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:13:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:13:22] [INFO ] Time to serialize gal into /tmp/CTLFireability14232838760743163448.gal : 0 ms
[2021-05-11 15:13:22] [INFO ] Time to serialize properties into /tmp/CTLFireability5007050857618113062.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability14232838760743163448.gal, -t, CGAL, -ctl, /tmp/CTLFireability5007050857618113062.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability14232838760743163448.gal -t CGAL -ctl /tmp/CTLFireability5007050857618113062.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:13:52] [INFO ] Flatten gal took : 4 ms
[2021-05-11 15:13:52] [INFO ] Applying decomposition
[2021-05-11 15:13:52] [INFO ] Flatten gal took : 4 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph7561034234774760598.txt, -o, /tmp/graph7561034234774760598.bin, -w, /tmp/graph7561034234774760598.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph7561034234774760598.bin, -l, -1, -v, -w, /tmp/graph7561034234774760598.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 15:13:52] [INFO ] Decomposing Gal with order
[2021-05-11 15:13:52] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 15:13:52] [INFO ] Removed a total of 32 redundant transitions.
[2021-05-11 15:13:52] [INFO ] Flatten gal took : 7 ms
[2021-05-11 15:13:52] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 1 ms.
[2021-05-11 15:13:52] [INFO ] Time to serialize gal into /tmp/CTLFireability17740318016919536846.gal : 1 ms
[2021-05-11 15:13:52] [INFO ] Time to serialize properties into /tmp/CTLFireability7108597976062405717.ctl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability17740318016919536846.gal, -t, CGAL, -ctl, /tmp/CTLFireability7108597976062405717.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability17740318016919536846.gal -t CGAL -ctl /tmp/CTLFireability7108597976062405717.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 0 with 2 rules applied. Total rules applied 2 place count 37 transition count 64
Partial Post-agglomeration rule applied 2 times.
Drop transitions removed 2 transitions
Iterating global reduction 0 with 2 rules applied. Total rules applied 4 place count 37 transition count 64
Applied a total of 4 rules in 4 ms. Remains 37 /38 variables (removed 1) and now considering 64/64 (removed 0) transitions.
[2021-05-11 15:14:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:14:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:14:22] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:14:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:14:22] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:14:22] [INFO ] Time to serialize gal into /tmp/CTLFireability13770643909890734237.gal : 1 ms
[2021-05-11 15:14:22] [INFO ] Time to serialize properties into /tmp/CTLFireability9792146476592056521.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability13770643909890734237.gal, -t, CGAL, -ctl, /tmp/CTLFireability9792146476592056521.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability13770643909890734237.gal -t CGAL -ctl /tmp/CTLFireability9792146476592056521.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:14:52] [INFO ] Flatten gal took : 3 ms
[2021-05-11 15:14:52] [INFO ] Applying decomposition
[2021-05-11 15:14:52] [INFO ] Flatten gal took : 3 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph14123498764500478699.txt, -o, /tmp/graph14123498764500478699.bin, -w, /tmp/graph14123498764500478699.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph14123498764500478699.bin, -l, -1, -v, -w, /tmp/graph14123498764500478699.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 15:14:52] [INFO ] Decomposing Gal with order
[2021-05-11 15:14:52] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 15:14:52] [INFO ] Removed a total of 38 redundant transitions.
[2021-05-11 15:14:52] [INFO ] Flatten gal took : 6 ms
[2021-05-11 15:14:52] [INFO ] Fuse similar labels procedure discarded/fused a total of 10 labels/synchronizations in 1 ms.
[2021-05-11 15:14:52] [INFO ] Time to serialize gal into /tmp/CTLFireability7269580264365377631.gal : 1 ms
[2021-05-11 15:14:52] [INFO ] Time to serialize properties into /tmp/CTLFireability8526545086857165449.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability7269580264365377631.gal, -t, CGAL, -ctl, /tmp/CTLFireability8526545086857165449.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability7269580264365377631.gal -t CGAL -ctl /tmp/CTLFireability8526545086857165449.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:15:22] [INFO ] Flatten gal took : 5 ms
[2021-05-11 15:15:22] [INFO ] Flatten gal took : 11 ms
[2021-05-11 15:15:22] [INFO ] Applying decomposition
[2021-05-11 15:15:22] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph10693305282452721186.txt, -o, /tmp/graph10693305282452721186.bin, -w, /tmp/graph10693305282452721186.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph10693305282452721186.bin, -l, -1, -v, -w, /tmp/graph10693305282452721186.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 15:15:22] [INFO ] Decomposing Gal with order
[2021-05-11 15:15:22] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 15:15:22] [INFO ] Removed a total of 41 redundant transitions.
[2021-05-11 15:15:22] [INFO ] Flatten gal took : 19 ms
[2021-05-11 15:15:22] [INFO ] Fuse similar labels procedure discarded/fused a total of 10 labels/synchronizations in 1 ms.
[2021-05-11 15:15:22] [INFO ] Time to serialize gal into /tmp/CTLFireability4718481817773741040.gal : 1 ms
[2021-05-11 15:15:22] [INFO ] Time to serialize properties into /tmp/CTLFireability11595396486865423846.ctl : 5 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability4718481817773741040.gal, -t, CGAL, -ctl, /tmp/CTLFireability11595396486865423846.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability4718481817773741040.gal -t CGAL -ctl /tmp/CTLFireability11595396486865423846.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:36:42] [INFO ] Flatten gal took : 6 ms
[2021-05-11 15:36:42] [INFO ] Time to serialize gal into /tmp/CTLFireability15065717075125353982.gal : 1 ms
[2021-05-11 15:36:42] [INFO ] Time to serialize properties into /tmp/CTLFireability18237693743646983164.ctl : 3 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability15065717075125353982.gal, -t, CGAL, -ctl, /tmp/CTLFireability18237693743646983164.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability15065717075125353982.gal -t CGAL -ctl /tmp/CTLFireability18237693743646983164.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:58:02] [INFO ] Flatten gal took : 6 ms
[2021-05-11 15:58:02] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:58:02] [INFO ] Transformed 38 places.
[2021-05-11 15:58:02] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-11 15:58:02] [INFO ] Time to serialize gal into /tmp/CTLFireability18149726056563111198.gal : 1 ms
[2021-05-11 15:58:02] [INFO ] Time to serialize properties into /tmp/CTLFireability16358764296400049321.ctl : 14 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability18149726056563111198.gal, -t, CGAL, -ctl, /tmp/CTLFireability16358764296400049321.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability18149726056563111198.gal -t CGAL -ctl /tmp/CTLFireability16358764296400049321.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
BK_TIME_CONFINEMENT_REACHED
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-25, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-162037989900356"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;