About the Execution of ITS-Tools for Angiogenesis-PT-20
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 9299.831 | 3600000.00 | 3579700.00 | 20090.60 | [undef] | Time out reached |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Formatting '/data/fkordon/mcc2021-input.r007-tall-162037989900348.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-20, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r007-tall-162037989900348
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preparation of the directory to be used:
/home/mcc/execution
total 388K
-rw-r--r-- 1 mcc users 17K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 112K May 10 09:42 CTLCardinality.xml
-rw-r--r-- 1 mcc users 8.2K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 79K May 10 09:42 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.7K Apr 26 07:40 LTLCardinality.txt
-rw-r--r-- 1 mcc users 24K Apr 26 07:40 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K Apr 26 07:40 LTLFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 26 07:40 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K Mar 23 01:45 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K Mar 23 01:45 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 2.4K Mar 22 10:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K Mar 22 10:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 22 09:09 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:09 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 3 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 33K May 5 16:51 model.pnml
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-20-CTLFireability-15
=== Now, execution of the tool begins
BK_START 1620744791518
Running Version 0
[2021-05-11 14:53:13] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-11 14:53:13] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-11 14:53:13] [INFO ] Load time of PNML (sax parser for PT used): 40 ms
[2021-05-11 14:53:13] [INFO ] Transformed 39 places.
[2021-05-11 14:53:13] [INFO ] Transformed 64 transitions.
[2021-05-11 14:53:13] [INFO ] Parsed PT model containing 39 places and 64 transitions in 82 ms.
Parsed 16 properties from file /home/mcc/execution/CTLFireability.xml in 14 ms.
[2021-05-11 14:53:13] [INFO ] Reduced 2 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 2 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
[2021-05-11 14:53:13] [INFO ] Reduced 1 identical enabling conditions.
Support contains 38 out of 39 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 39/39 places, 64/64 transitions.
Reduce places removed 1 places and 0 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Applied a total of 1 rules in 13 ms. Remains 38 /39 variables (removed 1) and now considering 64/64 (removed 0) transitions.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:53:13] [INFO ] Computed 7 place invariants in 7 ms
[2021-05-11 14:53:13] [INFO ] Implicit Places using invariants in 96 ms returned []
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:53:13] [INFO ] Computed 7 place invariants in 2 ms
[2021-05-11 14:53:13] [INFO ] Implicit Places using invariants and state equation in 61 ms returned []
Implicit Place search using SMT with State Equation took 194 ms to find 0 implicit places.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:53:13] [INFO ] Computed 7 place invariants in 3 ms
[2021-05-11 14:53:13] [INFO ] Dead Transitions using invariants and state equation in 43 ms returned []
Finished structural reductions, in 1 iterations. Remains : 38/39 places, 64/64 transitions.
[2021-05-11 14:53:13] [INFO ] Flatten gal took : 48 ms
[2021-05-11 14:53:14] [INFO ] Flatten gal took : 20 ms
[2021-05-11 14:53:14] [INFO ] Input system was already deterministic with 64 transitions.
Incomplete random walk after 100013 steps, including 4 resets, run finished after 91 ms. (steps per millisecond=1099 ) properties (out of 85) seen :82
Running SMT prover for 3 properties.
// Phase 1: matrix 64 rows 38 cols
[2021-05-11 14:53:14] [INFO ] Computed 7 place invariants in 4 ms
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using state equation in 20 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 6 ms.
[2021-05-11 14:53:14] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using state equation in 19 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 6 ms.
[2021-05-11 14:53:14] [INFO ] Added : 56 causal constraints over 12 iterations in 85 ms. Result :sat
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using 7 positive place invariants in 2 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using state equation in 16 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 11 ms.
[2021-05-11 14:53:14] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using state equation in 13 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2021-05-11 14:53:14] [INFO ] Added : 56 causal constraints over 12 iterations in 77 ms. Result :sat
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Real]Absence check using state equation in 13 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 4 ms.
[2021-05-11 14:53:14] [INFO ] Solution in real domain found non-integer solution.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using 7 positive place invariants in 1 ms returned sat
[2021-05-11 14:53:14] [INFO ] [Nat]Adding state equation constraints to refine reachable states.
[2021-05-11 14:53:14] [INFO ] [Nat]Absence check using state equation in 15 ms returned sat
[2021-05-11 14:53:14] [INFO ] Computed and/alt/rep : 59/142/59 causal constraints (skipped 2 transitions) in 5 ms.
[2021-05-11 14:53:14] [INFO ] Added : 56 causal constraints over 12 iterations in 70 ms. Result :sat
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 1 place count 38 transition count 64
Applied a total of 1 rules in 9 ms. Remains 38 /38 variables (removed 0) and now considering 64/64 (removed 0) transitions.
[2021-05-11 14:53:14] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:53:14] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:53:14] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 14:53:14] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:53:14] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:53:14] [INFO ] Time to serialize gal into /tmp/CTLFireability6274306516962536145.gal : 2 ms
[2021-05-11 14:53:14] [INFO ] Time to serialize properties into /tmp/CTLFireability6644568802196166474.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability6274306516962536145.gal, -t, CGAL, -ctl, /tmp/CTLFireability6644568802196166474.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability6274306516962536145.gal -t CGAL -ctl /tmp/CTLFireability6644568802196166474.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:53:44] [INFO ] Flatten gal took : 5 ms
[2021-05-11 14:53:44] [INFO ] Applying decomposition
[2021-05-11 14:53:44] [INFO ] Flatten gal took : 16 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph17248698389856851778.txt, -o, /tmp/graph17248698389856851778.bin, -w, /tmp/graph17248698389856851778.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph17248698389856851778.bin, -l, -1, -v, -w, /tmp/graph17248698389856851778.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:53:44] [INFO ] Decomposing Gal with order
[2021-05-11 14:53:44] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:53:45] [INFO ] Removed a total of 40 redundant transitions.
[2021-05-11 14:53:45] [INFO ] Flatten gal took : 28 ms
[2021-05-11 14:53:45] [INFO ] Fuse similar labels procedure discarded/fused a total of 2 labels/synchronizations in 3 ms.
[2021-05-11 14:53:45] [INFO ] Time to serialize gal into /tmp/CTLFireability4211351506107794814.gal : 2 ms
[2021-05-11 14:53:45] [INFO ] Time to serialize properties into /tmp/CTLFireability2902539768636214788.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability4211351506107794814.gal, -t, CGAL, -ctl, /tmp/CTLFireability2902539768636214788.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability4211351506107794814.gal -t CGAL -ctl /tmp/CTLFireability2902539768636214788.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 38 transition count 63
Deduced a syphon composed of 1 places in 1 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 36 transition count 63
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 0 with 1 rules applied. Total rules applied 4 place count 36 transition count 63
Applied a total of 4 rules in 11 ms. Remains 36 /38 variables (removed 2) and now considering 63/64 (removed 1) transitions.
[2021-05-11 14:54:15] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:54:15] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:54:15] [INFO ] Input system was already deterministic with 63 transitions.
[2021-05-11 14:54:15] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:54:15] [INFO ] Flatten gal took : 3 ms
[2021-05-11 14:54:15] [INFO ] Time to serialize gal into /tmp/CTLFireability667416974867983412.gal : 1 ms
[2021-05-11 14:54:15] [INFO ] Time to serialize properties into /tmp/CTLFireability1535449020071556724.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability667416974867983412.gal, -t, CGAL, -ctl, /tmp/CTLFireability1535449020071556724.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability667416974867983412.gal -t CGAL -ctl /tmp/CTLFireability1535449020071556724.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:54:45] [INFO ] Flatten gal took : 4 ms
[2021-05-11 14:54:45] [INFO ] Applying decomposition
[2021-05-11 14:54:45] [INFO ] Flatten gal took : 4 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph9699823203566100909.txt, -o, /tmp/graph9699823203566100909.bin, -w, /tmp/graph9699823203566100909.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph9699823203566100909.bin, -l, -1, -v, -w, /tmp/graph9699823203566100909.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:54:45] [INFO ] Decomposing Gal with order
[2021-05-11 14:54:45] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:54:45] [INFO ] Removed a total of 32 redundant transitions.
[2021-05-11 14:54:45] [INFO ] Flatten gal took : 9 ms
[2021-05-11 14:54:45] [INFO ] Fuse similar labels procedure discarded/fused a total of 4 labels/synchronizations in 2 ms.
[2021-05-11 14:54:45] [INFO ] Time to serialize gal into /tmp/CTLFireability2628557025969577090.gal : 3 ms
[2021-05-11 14:54:45] [INFO ] Time to serialize properties into /tmp/CTLFireability13450796886501207941.ctl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability2628557025969577090.gal, -t, CGAL, -ctl, /tmp/CTLFireability13450796886501207941.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability2628557025969577090.gal -t CGAL -ctl /tmp/CTLFireability13450796886501207941.ctl
No direction supplied, using forward translation only.
Parsed 1 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 14:55:15] [INFO ] Flatten gal took : 7 ms
[2021-05-11 14:55:15] [INFO ] Flatten gal took : 6 ms
[2021-05-11 14:55:15] [INFO ] Applying decomposition
[2021-05-11 14:55:15] [INFO ] Flatten gal took : 6 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph5025671354561226435.txt, -o, /tmp/graph5025671354561226435.bin, -w, /tmp/graph5025671354561226435.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph5025671354561226435.bin, -l, -1, -v, -w, /tmp/graph5025671354561226435.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-11 14:55:15] [INFO ] Decomposing Gal with order
[2021-05-11 14:55:15] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-11 14:55:15] [INFO ] Removed a total of 39 redundant transitions.
[2021-05-11 14:55:15] [INFO ] Flatten gal took : 12 ms
[2021-05-11 14:55:15] [INFO ] Fuse similar labels procedure discarded/fused a total of 6 labels/synchronizations in 1 ms.
[2021-05-11 14:55:15] [INFO ] Time to serialize gal into /tmp/CTLFireability18254107041309859841.gal : 2 ms
[2021-05-11 14:55:15] [INFO ] Time to serialize properties into /tmp/CTLFireability10593984106311653397.ctl : 5 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability18254107041309859841.gal, -t, CGAL, -ctl, /tmp/CTLFireability10593984106311653397.ctl], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability18254107041309859841.gal -t CGAL -ctl /tmp/CTLFireability10593984106311653397.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:15:55] [INFO ] Flatten gal took : 9 ms
[2021-05-11 15:15:55] [INFO ] Time to serialize gal into /tmp/CTLFireability16055340182003613967.gal : 1 ms
[2021-05-11 15:15:55] [INFO ] Time to serialize properties into /tmp/CTLFireability12003035309943256546.ctl : 22 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability16055340182003613967.gal, -t, CGAL, -ctl, /tmp/CTLFireability12003035309943256546.ctl, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability16055340182003613967.gal -t CGAL -ctl /tmp/CTLFireability12003035309943256546.ctl --gen-order FOLLOW
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Detected timeout of ITS tools.
[2021-05-11 15:36:35] [INFO ] Flatten gal took : 5 ms
[2021-05-11 15:36:35] [INFO ] Input system was already deterministic with 64 transitions.
[2021-05-11 15:36:35] [INFO ] Transformed 38 places.
[2021-05-11 15:36:35] [INFO ] Transformed 64 transitions.
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/pinvar, /home/mcc/execution/gspn], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Running greatSPN : CommandLine [args=[/home/mcc/BenchKit/bin//..//greatspn//bin/RGMEDD2, /home/mcc/execution/gspn, -META, -varord-only], workingDir=/home/mcc/execution]
Run of greatSPN captured in /home/mcc/execution/outPut.txt
Using order generated by GreatSPN with heuristic : META
[2021-05-11 15:36:35] [INFO ] Time to serialize gal into /tmp/CTLFireability561515431048392147.gal : 1 ms
[2021-05-11 15:36:35] [INFO ] Time to serialize properties into /tmp/CTLFireability4487042045806083622.ctl : 3 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /tmp/CTLFireability561515431048392147.gal, -t, CGAL, -ctl, /tmp/CTLFireability4487042045806083622.ctl, --load-order, /home/mcc/execution/model.ord, --gen-order, FOLLOW], workingDir=/home/mcc/execution]
its-ctl command run as :
/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /tmp/CTLFireability561515431048392147.gal -t CGAL -ctl /tmp/CTLFireability4487042045806083622.ctl --load-order /home/mcc/execution/model.ord --gen-order FOLLOW
Successfully loaded order from file /home/mcc/execution/model.ord
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,3.5182e+17,497.584,5850696,2,692402,5,3.59061e+07,6,0,219,3.60798e+07,0
Converting to forward existential form...Done !
original formula: EF(AX((!(EF((((((((KdStarGStarPg>=1)||(PtP3P2>=1))||((DAG>=1)&&(Enz>=1)))||(KdStarG>=1))||(KdStarPg>=1))||(KdStarGP3>=1))||(KdStarPgStarP2>=1)))) + (!(EG(((Pip2>=1)&&(Pten>=1)))) * (!(AF((((((Akt>=1)&&(Pip3>=1))||(KdStarG>=1))||((GStarP3>=1)&&(Pg>=1)))||(KdStarGP3>=1)))) + !(E((((((((AktP3>=1)||((KdStarGStar>=1)&&(P3k>=1)))||((KdStarGStar>=1)&&(Pip3>=1)))||(KdStarGStarPgP3>=1))||(GStarP3kP3>=1))||(KdStarPg>=1))||(KdStarGStarP3>=1)) U (((((KdStarGStarP3kP3>=1)||((KdStarGStarP3kStar>=1)&&(Pip2>=1)))||(KdStarGStarPgStarP3P2>=1))||(KdStarG>=1))||((GStarP3>=1)&&(P3k>=1))))))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!((!(E(TRUE U (((((((KdStarGStarPg>=1)||(PtP3P2>=1))||((DAG>=1)&&(Enz>=1)))||(KdStarG>=1))||(KdStarPg>=1))||(KdStarGP3>=1))||(KdStarPgStarP2>=1)))) + (!(EG(((Pip2>=1)&&(Pten>=1)))) * (!(!(EG(!((((((Akt>=1)&&(Pip3>=1))||(KdStarG>=1))||((GStarP3>=1)&&(Pg>=1)))||(KdStarGP3>=1)))))) + !(E((((((((AktP3>=1)||((KdStarGStar>=1)&&(P3k>=1)))||((KdStarGStar>=1)&&(Pip3>=1)))||(KdStarGStarPgP3>=1))||(GStarP3kP3>=1))||(KdStarPg>=1))||(KdStarGStarP3>=1)) U (((((KdStarGStarP3kP3>=1)||((KdStarGStarP3kStar>=1)&&(Pip2>=1)))||(KdStarGStarPgStarP3P2>=1))||(KdStarG>=1))||((GStarP3>=1)&&(P3k>=1))))))))))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions t12, t24, t51, t57, t61, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/59/5/64
BK_TIME_CONFINEMENT_REACHED
--------------------
content from stderr:
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLFireability = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-20, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r007-tall-162037989900348"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"
tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
if [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "UpperBounds" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] || [ "CTLFireability" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
elif [ "CTLFireability" = "ReachabilityDeadlock" ] || [ "CTLFireability" = "QuasiLiveness" ] || [ "CTLFireability" = "StableMarking" ] || [ "CTLFireability" = "Liveness" ] || [ "CTLFireability" = "OneSafe" ] ; then
echo "FORMULA_NAME CTLFireability"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;